BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30730.1
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473304 jgi|Araly1|473304|fgenesh2_kg.1__3258__AT1G30730.1 2381 0.0
Ahg922140 jgi|Araly1|922140|scaffold_103421.1 1546 0.0
> Ahg473304 jgi|Araly1|473304|fgenesh2_kg.1__3258__AT1G30730.1
Length=1581
Score = 2381 bits (1289), Expect = 0.0
Identities = 1483/1577 (94%), Gaps = 12/1577 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAAATTACTCATAATTTGCATGTTACTAATCTCAGTTTTAGTTGCAACTTCACAG 60
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 1 ATGGAAAAATTACTCATAATTTGCCTGTTACTAATCTCAGTTTCAGTTGCAACTTCCCAG 60
Query 61 TCGCAAACCGATCCAGAGACATTCCTCCGATGTCTCGTAAGAGAAGGATCAAACCCACAG 120
|| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 TCCCAAACCGATCCGGAGACTTTCCTCCGATGTCTCGTAAGAGAGGGATCAAACCCGCAG 120
Query 121 GTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTCACCACCGTCCTCCGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTCACCACCGTCCTCCGC 180
Query 181 CGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAACCCATCGCCATCATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAACCCATCGCCATCATC 240
Query 241 ACCCCCACCACGTGGTCACACATTTCTCCGGTGCTAGCTTGCGCACGCTTGTTCCCTGTC 300
||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 241 ACCCCTACCACATGGTCACACATTTCTCCGGCGCTAGCTTGCGCACGCTTACTCCCTGTC 300
Query 301 CAGGTCAGGATCCGAAGCGGCGGCCACGACTTCGAAGGACTCTCTTACACCTCCACAGCT 360
|| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 301 CAAGTCAGAATCCGAAGCGGCGGCCATGATTTCGAAGGACTCTCTTACACCTCCACCGCT 360
Query 361 CCGTTCTTCCTCATCGACTTGCTCAACTTCAAATCCGTTGATGTGAATCTCACGGAAGGA 420
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CCGTTCTTTGTCATCGACTTGCTCAACTTCAAATCCGTTGACGTGAATCTCACGGAAGGA 420
Query 421 ACGGCTTGGGTTGATACCGGCGCTACACTGGGAGAGCTTTATTATAAAATCGCTGAGAAA 480
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 421 ACGGCTTGGGTTGATACCGGCGCCACAATCGGAGAGCTTTATTATAAAATCGCTGAGAAA 480
Query 481 AGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACATATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACATATT 540
Query 541 AGCGGCGGAGGGTACGGGACAATGATGAGAAAGTATGGTTTGTCGGTGGACAACGTTGTC 600
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 541 AGCGGCGGAGGGTACGGAACTATGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTGTC 600
Query 601 GGCTCCAGGATCATCGACTCTAATGGGAACACCTACTTCGATCGAATGTCGATGGGGGAA 660
||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||
Sbjct 601 GGCTCCAGGATCATCGACTCTAACGGGAATACCTACTTCGATCGAGTGTCCATGGGGGAA 660
Query 661 GAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCGAGTTTCGGCATCGTGATGGGATAC 720
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 661 GAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCAAGTTTCGGTATCGTGATGGGATAC 720
Query 721 AAAATCCGGTTGGTTCCGGTTCCGGAGAAAGTTACGGTTTTTAGCGTCGGAAAAACCGTC 780
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 721 AAAATCCGGTTGGTTCCGGTGCCGGAGAAAGTAACGGTTTTTAGCGTTGGAAAAACCGTC 780
Query 781 GGAGAAGGAGCCGTTGATCTTATAATGAAGTGGCAGAACTTCTCTCATAGTACGGATCGG 840
||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||
Sbjct 781 GGAGAAGGAGCCGTTGATCTTATAACGAAGTGGCAGAATTTTTCTCACAGTACGGATCGG 840
Query 841 AATTTGTTTGTGAAGCTGACTTTGACTTTAGTCAACGGTGCAAAGCCGGGTGaaaaaaaG 900
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 841 AATTTGTTCGTGAAGCTGACTTTGACTTTGGTCAACGGTACAAAGCCGGGTGAAAAAACT 900
Query 901 GTTTTAGCGACTTTCATTGGGATGAATCTT-GGCGGGTTTGATAAGACGTTGAACGTGAT 959
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 901 GTTTTAGCGACTTTCATTGGGATGAAT-TTAGGCGGGTTGGATAAGACGTTGAACGTGAT 959
Query 960 GAACCGGGATTTCCCGGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGAT 1019
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAACCGGGATTTCCCAGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGAT 1019
Query 1020 CGATTCGGTTCTGTTTTGGGCCGGTTATCCGGTTGGTACACCGACTTCTGTGCTACTAAA 1079
|||||||||||||||||||||||||| |||| |||| ||||| ||||||||| |||||||
Sbjct 1020 CGATTCGGTTCTGTTTTGGGCCGGTTTTCCGATTGGCACACCAACTTCTGTGTTACTAAA 1079
Query 1080 CCCTACG-GTCACAAAAAAGTTGTTCATGAAACGGAAATCGGACTACGTGAAGCGTCCGG 1138
||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1080 CCCTA-GAGTTACAAAAAAGTTGTTCATGAAACGGAAATCAGACTACGTGAAGCGTCCGA 1138
Query 1139 TTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAATTGGTTGAG-TTGGAGAAAGTTGAA 1197
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 1139 TTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAATTGGTTGAGGTTG-ATAAAGTTGAA 1197
Query 1198 ATGAATTGGAATCCGTATGGAGGAAGAATGGGTGAGATCCCGAGTTCGAGGACACCTTTC 1257
|||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1198 ATGAATTGGATTCCATATGGAGGAAGAATGGGGGAGATCCCGAGTTCGAGGACACCTTTC 1257
Query 1258 CCACATAGAGGAGGCAATTTGTTCAACATTGAATATATCATAGACTGGTCAGAAGCTGGA 1317
|||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1258 CCACATAGAGAAGGAAATTTGTTCAACATTGAGTATATCATAGACTGGTCGGAAGCTGGA 1317
Query 1318 GATAATGTGGAGAAGAAAT-ATTTGGC--GCTCGCAAATGAGTTTTATAGATTCATGACC 1374
||| | ||||| ||| | | ||||||| | | |||| |||| | || | ||||||||||
Sbjct 1318 GATGACGTGGAAAAGGA-TCATTTGGCAAG-T-GCAAGTGAGATGTACAAATTCATGACC 1374
Query 1375 CCGTACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATATTGACATTGGG 1434
|| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 1375 CCATACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTCGACATAGGG 1434
Query 1435 TCAAGTGGTAATTCCACGTACGAGGAAGGTAAAATCTATGGGGCTAAATATTTCAAAGAC 1494
||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1435 TCAGGTGTTAATTCCACGTACCAGGAAGGTAAAATCTATGGGGCGAAATATTTCAAAGAC 1494
Query 1495 AATTTCGAGAGGTTAGTGGATATCAAAACCAAGTTCGATGAGATAAACTTTTGGAGGAAC 1554
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1495 AATTTCGAAAGGTTAGTGGATATCAAAACCAAGTTCGATGAAATAAACTTTTGGAGGAAC 1554
Query 1555 GAACAAAGTATTCCGGT 1571
|||||||||||||||||
Sbjct 1555 GAACAAAGTATTCCGGT 1571
> Ahg922140 jgi|Araly1|922140|scaffold_103421.1
Length=1622
Score = 1546 bits (837), Expect = 0.0
Identities = 1327/1561 (85%), Gaps = 43/1561 (3%)
Strand=Plus/Plus
Query 50 CAACTTCACAGT-CGCAAACCGATCC-AGAGACATTCCTCCGATGTCTCGTA-AGAGAAG 106
|||||||||| | || |||||||| | || | ||||| |||||||||| | ||| ||
Sbjct 73 CAACTTCACAATCCG-TGACCGATCCAATAG-CTTTCCTTCGATGTCTCG-ATAGACAAC 129
Query 107 GATCAAACCC-ACAGGTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTC 165
| | |||| ||| || | | ||||| |||| | || |||||| ||||||| || |||
Sbjct 130 CAACGGACCCAACAAGTCCT-AACTCCGCCGTCGCTTATATCCCAACAAACTCTTCCTTC 188
Query 166 ACCACCGTCCTCCGCCGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAA 225
||| |||||||||||||||| ||||||||||||||||||||||||||||| || | |||
Sbjct 189 ACCGCCGTCCTCCGCCGCCGTATACCTAACCTCCGTTTCGACAAACCCACTACTCGTAAA 248
Query 226 CCCATCGCCATCATCACCCCCACCACGTGGTCACACAT-TTCTCCGGTGC--TAGCTTGC 282
|||||| || || | | | ||||||||| |||||| | | | ||| ||| |||
Sbjct 249 CCCATCTCCGTCGTTGCAGCTACCACGTGG--ACACATATAC-AAGCTGCTATAGGATGC 305
Query 283 GCACGCTTGTTCCCTGTCCAGGTCAGGATCCGAAGCGGCGGCCACGACTTCGAAGGACTC 342
|||||| | || || |||| ||||||||| |||| || |||||||||||||||||||||
Sbjct 306 GCACGCGAGCTCTCTCTCCAAGTCAGGATCAGAAGTGGTGGCCACGACTTCGAAGGACTC 365
Query 343 TCTTACACCTCCACAGCT-CCGTTC-TTCCTCATCGACTTGCTCAACTTCAAATCCGTTG 400
|||||||| ||||| | | || ||| || || ||||| || || || |||||||| |
Sbjct 366 TCTTACACTTCCACCG-TCCCTTTCTTTGTTC-TCGACATGTTCGGTTTTAAATCCGTGG 423
Query 401 ATGTGAATCTCACGGAAG-GAACGGCTTGGGTTGATACCGGCGCTACAC-TGGGAGAGCT 458
| |||||||| || | || ||||||||||||||||| | || ||||| | | ||||||||
Sbjct 424 ACGTGAATCTAACCG-AGAGAACGGCTTGGGTTGATTCTGGTGCTAC-CGTCGGAGAGCT 481
Query 459 TTATTATAAAATCGCTGAGAAAAGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTAC 518
|||||| || |||||||| ||||||||| |||| |||||||||||||||| ||| ||
Sbjct 482 TTATTACCGGATAGCTGAGAAGAGCAATGTTTTTGGATTTCCGGCGGGTTTGTCTACGAC 541
Query 519 ATTGGGCGTTGGTGGACATATTAGCGGCGGAGGGTACGGGACA-ATGATGAGAAAGTATG 577
||||||||| ||||||||| ||||||||||||| ||||| | | |||||||||||||||
Sbjct 542 ATTGGGCGTCGGTGGACATTTTAGCGGCGGAGGATACGGTA-ATCTGATGAGAAAGTATG 600
Query 578 GTTTGTCGGTGGACAACGTTGTCGGCTCCAGGATCATCGACTCTAATGGGAACACCTACT 637
| ||||||||||| || |||||||||||| ||||| | || || |||||||||| || |
Sbjct 601 GATTGTCGGTGGATAATGTTGTCGGCTCCGGGATCGTTGATTCGAATGGGAACATCTTCA 660
Query 638 TCGATCGAATGTCGATGGGGGAAGAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCGA 697
||||||| | |||||||||||||| | |||||||||| ||||||| ||||| || ||||
Sbjct 661 CCGATCGAGTTTCGATGGGGGAAGACCGTTTCTGGGCGATTCGAGGTGGTGGTGCAGCGA 720
Query 698 GTTTCGGCATCGTGA-TGGGATACAAAATCCGGTTGGTTCCGGTTCCGGAGAAAGTTACG 756
| | ||| | || | | || ||||| |||| | | || ||||| || |||||||||||
Sbjct 721 GCTACGGTGTTGT-ACTCGGCTACAAGATCCAGCTAGTACCGGTGCCAGAGAAAGTTACT 779
Query 757 GTTTTTAGCGTCGGAAAAACCGTCGGAGAAGGAGCCGTTGATCTTATAATGAAGTGGCAG 816
||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 780 GTTTTTAAAATCGGAAAACCCGTCGGAGAAGGAGCGGGTGATCTTATAATGAAGTGGCAG 839
Query 817 AACTTCT-CTCATAGTACGGATCGGAATTTGTTTGTGAAGCTGACTTTGACTTTAGTCAA 875
| || | ||||||||||||||||||||||||| |||| | |||| |||||||| |||||
Sbjct 840 -AGTTTTGCTCATAGTACGGATCGGAATTTGTTCGTGAGGTTGACGTTGACTTTGGTCAA 898
Query 876 CGGTGCAAAGCCGGGTGaaaaaaaGGTTTTAGCGACTTTCATTGGGATGAATCTT-GGCG 934
|||| | ||||| |||||||| | |||||| || |||| ||||||||| || || |||
Sbjct 899 CGGTACGAAGCCTGGTGAAAAGATGGTTTTGGCTTCTTTTATTGGGATGTAT-TTAGGCC 957
Query 935 GGTTTGATAAGAC-GTTGAACGTGATGAACCGGGATTTCCCGGAGTTAAAGCTGAAGAAA 993
||| |||||| | ||||| ||||||||||||||||||||||||||| ||| ||||||||
Sbjct 958 GGTCGGATAAG-CTGTTGACCGTGATGAACCGGGATTTCCCGGAGTTGAAGTTGAAGAAA 1016
Query 994 ACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTTTTGGGCCGGTTATCCGGTT 1053
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1017 ACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTTTTGGGACGATTATCCGGTT 1076
Query 1054 GGTACACCGACTTCTGTGCTACTAAACCCTACGGTCACAAAAAAGTTGTTCATGAAACGG 1113
|||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 1077 GGTACACCGACTTCTGTGCTGCTAAACCC---GGTCGCAAAAAAGTTGTTCATGAAACGA 1133
Query 1114 AAATCGGACTACGTGAAGCGTCCGGTTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAA 1173
||||| |||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||
Sbjct 1134 AAATCTGACTACGTGAAGCGTCCGATTTCGAGAGCCGGCATCGATTTGATACTCAAGAAA 1193
Query 1174 TTGGTTGAG-TTGGAGAAAGTTGAAATGAATTGGAATCCGTATGGAGGAAGAATGGGTGA 1232
||||| ||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1194 TTGGTAGAGGTTG-AGAAAGTTAAAATGAATTGGAATCCGTACGGAGGAAGAATGGGTGA 1252
Query 1233 GATCCCGAGTTCGAGGACACCTTTCCCACATAGAGGAGGCAATTTGTTCAACATTGAATA 1292
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1253 GATCCCGAGTTCGAGGACACCTTTCCCACATAGAGCAGGCAATTTGTTCAACATTGAGTA 1312
Query 1293 TATCATAGACTGGTCAGAAGCTGGAGATAATGTGGAGAAGAAA-TATTTGGCGCTCGCAA 1351
||||||||||||||| |||||||||||||| || |||| |||| |||||||| ||||| |
Sbjct 1313 TATCATAGACTGGTCCGAAGCTGGAGATAACGTCGAGA-GAAAATATTTGGCACTCGCGA 1371
Query 1352 ATGAGTTTTATAGATTCATGACCCCGTACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGA 1411
||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1372 ATGAGTTATACGGATTCATGACCCCGTACGTGTCTAGTAGTCCGAGGGAGGCGTTTTTGA 1431
Query 1412 ATTACCGTGATATTGACATTGGGTCAAGTGGTAATTCCACGTACGAGGAAGGTAAAATCT 1471
|||||||||| ||||||| |||||||||| ||| ||||||||| |||||||||||||||
Sbjct 1432 ATTACCGTGACCTTGACATAGGGTCAAGTGTTAAGTCCACGTACCAGGAAGGTAAAATCT 1491
Query 1472 ATGGGGCTAAATATTTCAAAGACAATTTCGAGAGGTTAGTGGATATCAAAACCAAGTTCG 1531
|||||| ||||||||||||||||||||||||||| |||||||||| ||||||| | |||
Sbjct 1492 ATGGGGATAAATATTTCAAAGACAATTTCGAGAGACTAGTGGATATTAAAACCACGATCG 1551
Query 1532 ATGAG-ATAAACTTTTGGAGGAACGAACAAAGTATTCCGGTCCGGAAGT-AATAAGTTCA 1589
||| | | ||||||||||| ||||||||||| |||||||| || |||| ||||||||||
Sbjct 1552 ATGCGGA-AAACTTTTGGAAAAACGAACAAAGCATTCCGGTTCG-AAGTTAATAAGTTCA 1609
Query 1590 A 1590
|
Sbjct 1610 A 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63039355475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5