BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30740.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922142 jgi|Araly1|922142|scaffold_103423.1 2340 0.0
> Ahg922142 jgi|Araly1|922142|scaffold_103423.1
Length=1654
Score = 2340 bits (1267), Expect = 0.0
Identities = 1494/1605 (93%), Gaps = 9/1605 (1%)
Strand=Plus/Plus
Query 4 TATCTTATCTTTCTTCTATTCTTCGCTGCATCGTACTCAATGTCATTGAGTTCTGCAGAT 63
|||||| |||||||||| || ||||||||||||| ||| || ||||||||||||||||||
Sbjct 33 TATCTTTTCTTTCTTCTCTTTTTCGCTGCATCGTCCTCTATATCATTGAGTTCTGCAGAT 92
Query 64 TCCGTAACTATCTACGAAGATTTTGTCCAATGTTTCAAAAACGTGACAACTATCTCCGAC 123
|||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |||||
Sbjct 93 TCCGTAACTATCTACGAAGATTTTGTCCGATGTTTCAAAAACGTAACAAGTATCACCGAC 152
Query 124 -ATTGATCTCTCCGACGTCGTTTTACCACGTACTAGCATTTCCTTCACTCCTACCTTACG 182
| ||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 153 GA-TGATCTCTCCGCCGTCGTTTTGCCACGTACCAGCGTTTCCTTCACTCCTACCTTACG 211
Query 183 CGCCTACATCAGAAACGCCCGTTTCAACACCTCCTCAATGCCAAAACCGTCGATCATCAT 242
||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 212 CGCTTACATCAGAAACGCGCGTTTCAACACCTCCTCAACGCCAAAACCGTCGATCATCAT 271
Query 243 CGTGCCCCGTGTCGATTCACACGTTCAAGCCGCCGTGATTTGCGCCAAAACGCTTAATCT 302
| |||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 272 CCTGCCACGTGTCGATTCCCACGTTCAAGCCGCCGTGATCTGCGCCAAAACGCTGAATCT 331
Query 303 CCAGCTGAAGATTCGTAGCGGCGGTCATGACTACGACGGTCTTTCTTACGTCTCCGCCGT 362
|||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 332 CCAGCTTAAGATCCGTAGCGGTGGTCATGACTACGACGGTCTCTCTTACGTCTCCGCTGT 391
Query 363 AACGTTCCTCGTACTTGATCTATCCAATTTCCGAAACATCACCGTCGATTTAA---ACGA 419
||||||||||| |||||||| || |||||||||||| ||||||| ||| ||| | ||
Sbjct 392 GACGTTCCTCGTCCTTGATCTCTCTAATTTCCGAAACGTCACCGTTGATATAACCGATGA 451
Query 420 CGGAGGAGGATCCGCTTGGGTACAAACCGGCGCGACGCTCGGCGAGCTTTATTATAGGAT 479
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 452 CGGAGCAGGATCCGCTTGGGTACAATCCGGCGCGACGCTCGGCGAGCTTTATTATCGGAT 511
Query 480 CTGGGAGAAGAGCGAGGTCCATGCTTTCCCTGCCGGAGTTTGTCCTACCGTCGGCGTTGG 539
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 512 CTGGGAGAAGAGCGAGGTCCATGCTTTCCCCGCCGGCGTATGTCCTACCGTCGGCGTCGG 571
Query 540 AGGACACGTTAGCGGTGGTGGATACGGACACATGATTCGAAAATTCGGACTCACTATAGA 599
||||||||| ||| | ||||||||||||||| ||||||||||||| || |||||||||||
Sbjct 572 AGGACACGTAAGCAGCGGTGGATACGGACACCTGATTCGAAAATTTGGTCTCACTATAGA 631
Query 600 TCACGTCGTCGACGCTACAATCGTTGACGCTAACGGTCAGATTCACGATCGGAAATCGAT 659
||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 632 TCACGTCGTTGACGCCACAATCGTCGACGCTAACGGTCAAATTCACGATCGGAAATCTAT 691
Query 660 GGAAGAAGATCTCTTCTGGGCGATTCGCGGCGGAGGCGGCGGAAGCTTCGGCGTCGTTTT 719
|| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 692 GGGAGAGGATCTTTTCTGGGCGATTCGCGGCGGAGGCGGCGGAAGCTTCGGCGTTATTCT 751
Query 720 AGCTTTCAAAGTGAAACTCGT-GACCGTTCCAAAAACCGTAACCGTTTTCAGAGTTGATA 778
||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 752 AGCTTTCAAAGTGAAACTCGTGGA-GGTTCCAAAAACCGTAACCGTTTTCAGGGTTGATA 810
Query 779 AGTCTGTAGACGAAAATGCCCTTGACATGGTTTACAAATGGCAATTCGTAGCTCCTAGAA 838
| || || |||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 811 AATCGGTTGACGAAAATGCCCTTGACATGGTTCATAAATGGCAATTCGTAGCTCCAAGAA 870
Query 839 CCGACCCGGGTTTATTCATGAGAGTGTTGTTATCATCTCCGACGCAGAACAAAACAAGTA 898
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 871 CCGACCCGGGTCTATTCATGAGAGTGTTGTTATCCTCTCCGACGCAGAACAAAACACGTA 930
Query 899 CGGTGAACACTAAACTCAGGGCGTTGTATCTTGGAAAAGCAGACGACGTCGTTTTAAAGA 958
|||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 931 CGGTGAACGCTAAACTCAGGGCGTTGTATCTTGGAAGAGCTGACGACGTCGTTTTAAGGA 990
Query 959 TGGCGGAGGAGTTTCCGGAGTTGGGTTTGAAGAAAGAAGATTGTAAGGAGATGACGTGGA 1018
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TGACGGAGGAGTTTCCGGAGTTGGGTTTGAAGAAAGAAGATTGTAAGGAGATGACGTGGA 1050
Query 1019 TCCAATCACTCTTATGGTGGATGAATCATGTAGACGTGGACAAAGTCAAACCGGAGATAT 1078
||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1051 TCCAATCGCTATTATGGTGGATGAATCATGTAGACGTGGATAAAGTTAAACCGGAGATTT 1110
Query 1079 TACTCGAGAGAGAACCGGATTCGGCTAAATTTCTCAAGAGAAAATCAGATTACGTAGAGA 1138
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1111 TGCTCGAGAGAGAACCGGATTCGGCTAAATTTCTCAAGAGGAAATCGGATTACGTTGAGA 1170
Query 1139 AAGAGATGACCAAACCAGAATTAAACCGGTTGTTTCAGAAATTGGCGACGTTAGATAGAA 1198
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1171 AGGAGATGACCAAACCAGAATTAAACCGATTGTTTCAGAAATTGGCGACGTTAGATAGAA 1230
Query 1199 CCGGTTTGGTTTTGAATCCGTATGGAGGGAGTTTAAACGTGACCGCAGTGAATGCAACGG 1258
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 1231 CCGGTTTGGTTTTGAATCCGTATGGAGGGAATTTAAACGTGACCGCAGTGAATGAAACAG 1290
Query 1259 CGTTTCCGCATCGGCACAAACTATATAAGATCCAGCATTCGGTGACTTGGCCCGATGCTG 1318
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1291 CGTTTCCGCATCGGCACAAACTATATAAGATCCAGCATTCGGCGACTTGGCCTGATGCTG 1350
Query 1319 GACCGGAAGCGGAAAGACTTTACATTGGTAATTTAAGAACGACTTATAATATT-ATGACT 1377
||||||||||||||||||| || |||||||||||||||||||| ||||| ||| ||||||
Sbjct 1351 GACCGGAAGCGGAAAGACTCTATATTGGTAATTTAAGAACGACCTATAA-ATTCATGACT 1409
Query 1378 CCGTTTGTGTCGAAAAATCCTAGGAGTTCGTATTTAAACTATAGGGATATTGATATCGGG 1437
|||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 1410 CCGTTTGTGTCGAAGAATCCTCGAAGTTCGTATTTGAACTATAGGGATATTGATATCGGG 1469
Query 1438 GTTAATGATCATGGAGCGGATGGTTATCGAAAGGGAGAAATCTATGGGAGGAAGTATTTT 1497
|||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1470 GTTAATGATCATGGAGTGGATAGTTATCGAAAGGGAGAAATCTACGGGAGGAAGTATTTT 1529
Query 1498 GGCGAGAATTTTGATCGATTGGTTCGTGTTAAAACGGCTGTTGATCCGGATAATTTCTTT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 GGCGAGAATTTTGATCGATTGGTTCGTGTTAAAACGGCTGTTGATCCGGATAATTTCTTT 1589
Query 1558 AGAAATGAGCAGAGTATACCAACTTTACCTCCTAATAGAAGATAG 1602
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1590 AGAAATGAGCAGAGTATACCAACTTTACCTCCAAATAGAAGATAG 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5