BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30750.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922143 jgi|Araly1|922143|scaffold_103424.1 806 0.0
> Ahg922143 jgi|Araly1|922143|scaffold_103424.1
Length=691
Score = 806 bits (436), Expect = 0.0
Identities = 597/668 (89%), Gaps = 37/668 (6%)
Strand=Plus/Plus
Query 19 AAAATGGACATGAAATTCGCCAAAACCGGGAGATGTATGCTCACAATCATT-TTC--TGC 75
|||||||| | |||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 21 AAAATGGATAGGAAATTCGCCAAAACCGGGAGATGTATGCTTACAATCATTCTTCTGTGC 80
Query 76 CTTCTGGTATCATCAATTTCAGAGGCTGCACAAGTAACCAAAATCACCACACCATTAGAA 135
|||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 81 CTTCTGGTTTCATCATTTTCAGAGGCTGCACAAGTAACCCAAATCACCACACCATTAGAA 140
Query 136 CCAACAGGAG-----GAGT--------AAG---C--GTGAACCAGAACCAACCAATTCTT 177
|||||||||| | | ||| | ||||||||||||||||||||||||
Sbjct 141 CCAACAGGAGTCATCAATTCACCAACAAAGCCACAAGTGAACCAGAACCAACCAATTCTT 200
Query 178 GGTCAACCTTCTTCTTCTTCACCTGTAAACCAGCCTTTAACCGGGTTAAGCCAACCATTA 237
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 201 GGTCAGCCATCTTCTTCTTCTCCTGTAAACCAGCCTTTAACCGGGTTAAGCCAACCATTA 260
Query 238 ATCGGATTCAATCAACCTTCATCAACTGGTTTGAAG-CAACCAATTCTTGGTCAGCCATC 296
| |||||| ||||| || ||||||||||| | ||| |||||||||||||||||||||||
Sbjct 261 ACCGGATTTAATCAGCCATCATCAACTGGACT-AAGCCAACCAATTCTTGGTCAGCCATC 319
Query 297 TACTTCTTCTTCGGTAAACCAGCCTTTAACCGGGATAAATCAACCATTAACCGGATTTAA 356
|||||||||||| ||||||||||| ||||||||| |||||||||||||||| || |||||
Sbjct 320 TACTTCTTCTTCTGTAAACCAGCCATTAACCGGGTTAAATCAACCATTAACTGGGTTTAA 379
Query 357 TCAGCCATCATCAACTGGACTCAA-CAATCCAATTCTTGGTCAGCCATCTACTTCTTCTT 415
|||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||| |
Sbjct 380 TCAGCCATCATCAACTGGACTCAACCAA-CCAATTCTTGGTCAGCCA--T-CTTCTTC-T 434
Query 416 CCCTTAACCAACCTTTAACCGGGTTTAATCAACCATCATCAACTGGATTCAACCAACCGA 475
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 --CTAAACCAACCTTTAACCGGGTTTAATCAACCATCATCAACTGGATTCAACCAACCGA 492
Query 476 TTTCTTCGTCTTCTTCTTCATCATCATCTGCTCAAAATCAACCCTTTACGAATCGACTCA 535
||||||| || || ||||| | || | |||||||| || |||||||||||||||||||
Sbjct 493 TTTCTTCTTCGTCCTCTTC-T--TC-T--GCTCAAAACCAGCCCTTTACGAATCGACTCA 546
Query 536 ACCAGAACAATCTCTCTGGCGTTCCATTTCTTAATGGAAATTCAAAGTTGAAGGTCTCCG 595
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 547 ACCAGAACAATCTCTCGGGCGTTCCATTTCTTAATGGAAATTCAAAGTTGAAGATCTCCG 606
Query 596 GCACAAAGATTATCTTTATCTGGATTGGTCTTTTCCTTGCTTTGCACGGTACTGACAGGA 655
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 607 GCACAAAGATTGTGTTTATCTGGATTGGTCTTTTCCTTGCTTTGCACGGTACTGATAGGA 666
Query 656 ACTGAACC 663
||| ||||
Sbjct 667 ACTAAACC 674
Score = 243 bits (131), Expect = 2e-63
Identities = 167/184 (91%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 270 GAAGCAACCAATTCTTGGTCAGCCATCTACTTCTTCTTCGGTAAACCAGCCTTTAACCGG 329
||| |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 185 GAACCAACCAATTCTTGGTCAGCCATCTTCTTCTTCTCCTGTAAACCAGCCTTTAACCGG 244
Query 330 GATAAATCAACCATTAACCGGATTTAATCAGCCATCATCAACTGGACTCAA--CAATCCA 387
| ||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 245 GTTAAGCCAACCATTAACCGGATTTAATCAGCCATCATCAACTGGACT-AAGCCAA-CCA 302
Query 388 ATTCTTGGTCAGCCATCTACTTCTTCTTCCCTTAACCAACCTTTAACCGGGTTTAATCAA 447
||||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||||
Sbjct 303 ATTCTTGGTCAGCCATCTACTTCTTCTTCTGTAAACCAGCCATTAACCGGGTTAAATCAA 362
Query 448 CCAT 451
||||
Sbjct 363 CCAT 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5