BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30755.1
Length=2141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473306 jgi|Araly1|473306|fgenesh2_kg.1__3260__AT1G30755.1 3173 0.0
> Ahg473306 jgi|Araly1|473306|fgenesh2_kg.1__3260__AT1G30755.1
Length=2113
Score = 3173 bits (1718), Expect = 0.0
Identities = 1980/2106 (94%), Gaps = 19/2106 (1%)
Strand=Plus/Plus
Query 30 TTGAATCTTTTGGGTCATTTGGTCTCTCTTCTGCTGTTTTCCTCTGAAGATTAGAGCTTT 89
|||| |||||||||||||||| ||||| || |||| ||||||||| || |||||||||||
Sbjct 21 TTGATTCTTTTGGGTCATTTGATCTCT-TT-TGCTTTTTTCCTCTAAAAATTAGAGCTTT 78
Query 90 ACCAGAGAGATAACTTGTTGGAGAAG-ACAAATGGGAGGTGTTTGTTCTTGTGTATTCAA 148
| | |||||||||||||||||||||| | |||||||||||| |||||||||||||| |||
Sbjct 79 ATCGGAGAGATAACTTGTTGGAGAAGAAAAAATGGGAGGTGCTTGTTCTTGTGTATACAA 138
Query 149 AGATGATGATAAGAAGAAGAAGTTGAGATCAAACGATGATGATAAGTCAAGAGGGTTTTC 208
||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 139 AGATGGTGAT---AAGAAGAAGTTGAGATCAAAC---GATGATAAGTCAAGAGGGTTTTC 192
Query 209 TGGGAAACTTAAGTCTATGAGAAGAAGTAA-AACCTCTGATTCTTATTATTCAGATAATT 267
||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct 193 TGGGAAACTGAAGTCGATGAGGAGAAG-AAGAACCTCTGATTCTTATTATTCAGATCATT 251
Query 268 ACGGAGGCTCAAGACGGAAAAGTTCTAAGCCTGATGAGGTTGTTTTCAACTTTTCTGGCG 327
||||| |||| || ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 252 ACGGAAGCTCGAGGCGGAAAAGTTCTAAGCCTGATGAGGTTGTTTTCAACTTTTCCGGTG 311
Query 328 AGCTTGGTCCGATGCCTCCATTAAGGAACGATTCCACCAAGTTTATGCAGAGGAACTCGT 387
| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 312 AACTCGGTCCGATGCCTCCGTTAAGGAACGATTCTACCAAGTTTATGCAGAGGAACTCGT 371
Query 388 TTATGGGACGGGCTGGGGTAATGGGGCTAGAGAAAGCTGTTGAAGTTCTAGACACGCTCG 447
||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||| |
Sbjct 372 TTATGGGACGGGCTGGGGTTATGGGGTTAGAGAAGGCGGTTGAAGTTCTAGACACGCTGG 431
Query 448 GGAGCAGCATGACTCGTATGAATCCGAGCAACGCGTATCTCTCTGGTGTTACATCGTCCC 507
||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 432 GGAGCAGCATGTCTCGTATGAACCCGAGCAGCGCGTATCTCTCTGGTGTTACATCGTCCC 491
Query 508 GTGGTGGCAAAGTCACTATATTGGCTTTTGAAGTGGCCAATACTATTGCCAAAGGTGCTG 567
||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 492 GTGGTGGCAAAGTCACTATATTGGCCTTTGAAGTGGCCAACACAATAGCCAAAGGTGCTG 551
Query 568 CTTTGCTGCAATCTTTGTCTGAAGAGAATCTCAAGTTCATGAAGAAAGATATGTTGC-AT 626
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 552 CTTTGCTACAATCTTTGTCTGAAGAGAATCTCAAGTTTATGAAGAAAGATATGTTGCGA- 610
Query 627 TCCGAGGAAGTCAAGAAGTTGGTTTCTACGGATACCACAGAGTTGCAAATTCTTGCTGCT 686
||| ||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 611 TCCAAGGGAGTTAAGAAGTTGGTTTCTACGGATACCGCAGAGTTGCAAATTCTTGCTGCT 670
Query 687 TCTGACAAAAGGGAGGAACTCGATCTTTTCTCTGGAGAGGTTATCAGGTTTGGTAATATG 746
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 671 TCTGACAAAAGGGAGGAACTCGATCTTTTTTCTGGAGAGGTTATCAGGTTTGGCAATATG 730
Query 747 TGCAAAGATCTGCAGTGGCACAATCTCGATCGATATTTTATGAAGCTTGACACAGAGAAC 806
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TGCAAAGATATGCAGTGGCACAATCTCGATCGATATTTTATGAAGCTTGACACAGAGAAC 790
Query 807 TCACAGCATAAACTGCTCAAAGATGATGCAGAGGCAAGGATGCAAGAGCTCGTCACTCTT 866
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 791 TCACAGCATAAACTGCTCAAAGATGAGGCAGAGGCAAAGATGCAAGAGCTCGTCACTCTT 850
Query 867 GCCAGAATCACTTCTGAGTTATATCACGAGTTGCAAGCTTTGGATAGGTTTGAACAAGAT 926
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GCCCGATTCACTTCTGAGTTATATCACGAGTTGCAAGCTTTGGATAGGTTTGAACAAGAT 910
Query 927 TACAGGAGAAAGCTTGCAGAAGTAGAGTCTTTAAACCTCCCTCGGAGAGGAGAGGGTATC 986
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 911 TACAGGAGAAAGCTTGCAGAAATAGAGTCTTTAAACCTCCCTCGGAGAGGAGAGGGTATT 970
Query 987 GTCATCTTACAAAATGAACTAAAACAACAGAAGAAACTCGTGAAGAGCTTACAGAAGAAA 1046
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 971 GTCATCTTACAAAATGAACTAAAACAACAGAGGAAACTCGTGAAGAGCTTACAGAAGAAA 1030
Query 1047 TCCCTATGGTCCCAGAATCTGGCAGAGATAATTGAGAAGCTTGTGGATGTTGTAAGTTAT 1106
|| || |||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 1031 TCGCTCTGGTCCCAGAATCTGGAAGAGATAATTGAGAAGCTTGTGGATGTTGTTTGCTAT 1090
Query 1107 ATACGGCAGACGATTGTGGAAGTTTTTGGCAACAA-TGGTCTAAGAGACAATGAAGGGGA 1165
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |
Sbjct 1091 ATACGGCAGACGATTGTGGAAGTTTTTGGCAACAACGGGT-TAAAAGACAATGAAGGGAA 1149
Query 1166 GCAGGGAAGAGAACGATTAGGTGAAGCCGGTCTTTCGTTACACTATGCTAATCTAATACA 1225
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1150 GCAGGGAAGAGAACGATTAGGTGAAGCCGGTCTTTCGTTACACTATGCTAATTTAATCCA 1209
Query 1226 ACAAATCGATAATATTGCGTCTCGACCATCGTCACTTCCTTCTAATGTAAGGGACACGCT 1285
||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1210 ACAAATCGATAGTATTGCGTCTCGACCATCATCACTTCCTTCTAATGTACGGGACACGCT 1269
Query 1286 GTACAATGCATTACCCGCTACTGTCAAGACAGCTCTTCGTCCTCGGCTACAAACTCTTGA 1345
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1270 GTACAATGCATTACCTGCTACCGTCAAGACAGCTCTTCGTCCTCGGTTACAAACTCTTGA 1329
Query 1346 TCAGGAGGAAGAGCTTTCAGTAC-CTGAGATCAAAGCTGAAATGGAGAAGTCGCTTCAAT 1404
|| |||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1330 TCCGGAGGAAGAGCTTTCAAT-CTCTGAGATCAAAGCTGAAATGGAGAAGTCGCTTCAAT 1388
Query 1405 GGCTTGTCCCGTTCGCTGAAAACACCACCAAAGCACATCAAGGCTTCGGATGGGTAGGTG 1464
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1389 GGCTTGTCCCGTTCGCCGAAAACACTACCAAAGCACATCAAGGCTTCGGATGGGTAGGTG 1448
Query 1465 AATGGGCAAATTCAAGGATAGAGTTTGGGAAAGGAAAAGGAAAAGGCGAGAACAACGGGA 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1449 AATGGGCAAATTCAAGGATAGAGTTTGGGAAAGGAAAAGGAAAAGGCGAGAACAATGGGA 1508
Query 1525 ATCCAACACGACTTCAGACGCTTCATCATGCGGATAAACCAATAGTTGATTCATATGTAC 1584
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1509 ATCCAACACGACTTCAGACGCTTCATCACGCGGATAAACCAACAGTTGATTCATATGTAC 1568
Query 1585 TCGAACTCGTTGTATGGCTTCATCGACTAATGAAGTCATCAAAGAAACGTGCTCACGGCG 1644
|||||||||||||||||||||||||||||||||||||||| |||||||| | ||| || |
Sbjct 1569 TCGAACTCGTTGTATGGCTTCATCGACTAATGAAGTCATCTAAGAAACGAGTTCAAGGAG 1628
Query 1645 TTAAGCTTCAAGAAACCAACCATGTCTCTCCACCCAACAACAGAACCATCTCCAACACGC 1704
|||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 1629 TTAAGCTTCAAGAAACCAACCATGTCTCTCCACCCAACAAGATTACCATCTCCAATACGC 1688
Query 1705 AACTATCACTCTCCCCTGACTTCACCTACAAAAACCAGCTCTCTCTAGAAGACAGGTTGT 1764
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1689 AACTATCCCTCTCCCCTGACTTCACCTATAAAAACCAACTCTCTCTAGAAGACAGGTTGT 1748
Query 1765 TGTTAGACAGAGTCCAAAGTATAAGATTTGGTCCAAATCTAAGTAAGAGTCAAGAGTTAG 1824
||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||||
Sbjct 1749 TGTTAGACAGAGTCCAAAGCATAAGATTCGGGCCTAATCTAAGTAAGAGTCAAGAATTAG 1808
Query 1825 TCGGCTTGAAGAAGAACAAGAAAGGATTCAAGATTTGGGCACTGAGTAGAAGTACAGGAA 1884
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1809 TCGGCTTGAAGAAGAACAAGAAAGGAATCAAGATTTGGGCACTAAGTAGAAGTACAGGAA 1868
Query 1885 ACTCTCCAAAAGTTGATCTTTCAGATAAGAACTCTTCTAGTGATTTGGATGTCCTTGATG 1944
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1869 ACTCTCCAAAAGTTGATCTTTCAGATAAGAACTCTTCTAGTGATTTGGATGTTCTTGATG 1928
Query 1945 GTTTGGATTTCGCTTTCCAATAGGCGCAACACGTTCGGTTTGAGAACCGGTTTTTGATCA 2004
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1929 GTTTGGATTTCGCTTTCCATTAGGCGCAACGTGTTCGGTTTGAGAACCGGTTTTTGATCC 1988
Query 2005 AATTCTTCTGTATTTATAGATAAATTCTATCATTCTTGTATATAAA-CACAGCATATAAG 2063
| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 1989 A-TTCTTCTGTATTTATAGATAAATTCTATCATTCTTGTATATAAAACAAAGCTTATAAG 2047
Query 2064 CACAAAACAGTGATGTAATAGTTGATACAGAAACAAAGACACTATATGGTTGGTTTAGTT 2123
||||||||||||||||| ||| ||||||| ||||||||||| ||| ||||||||||||||
Sbjct 2048 CACAAAACAGTGATGTAGTAGATGATACAAAAACAAAGACAGTATTTGGTTGGTTTAGTT 2107
Query 2124 GGATTT 2129
||||||
Sbjct 2108 GGATTT 2113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80560868175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5