BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30760.1
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473307 jgi|Araly1|473307|fgenesh2_kg.1__3261__AT1G30760.1 2756 0.0
Ahg934079 jgi|Araly1|934079|scaffold_402067.1 1175 0.0
> Ahg473307 jgi|Araly1|473307|fgenesh2_kg.1__3261__AT1G30760.1
Length=1808
Score = 2756 bits (1492), Expect = 0.0
Identities = 1707/1810 (94%), Gaps = 18/1810 (1%)
Strand=Plus/Plus
Query 44 ATGGCGTTT--G-TATTAATGAATAACACAAACGCGTTTCTTGTAACGCTACTATTACTA 100
||||||||| | || |||| | |||| ||||||||||||| || || |||||||||||
Sbjct 1 ATGGCGTTTACGTTAATAATTATTAACGCAAACGCGTTTCTCGTGACTTTACTATTACTA 60
Query 101 TCCCTTTCTTACATTCCATTGTCTTTTTCCACAATCCAACAAGACTTCGTGATGTGTCTA 160
|| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 61 TCTCTTTCTTACATTCCATTGTCTTCTTCCACTATGCAACAAGACTTCGTGATGTGTCTA 120
Query 161 GTCGACAACTCCGACGCTTCCTTTCCAATGGACTCATCGTTCTTCACTCACGACCTAAAC 220
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GTCGACAACTCCGACGCTTCGTTTCCAATGGACTCGTCGTTCTTCACTCACGACCTAAAC 180
Query 221 GCCTCTTCCTTTAAACTCGCCTTAGAGACGTCAGCTCAAAATCTCCGTTACTTGATGCCT 280
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCATCTTCCTTTAAACTGGCGTTAGAGACGTCAGCTCAAAATCTCCGTTACTTGATGCCA 240
Query 281 TCAAATCCTAAGCCAGAGTTCATTTTCGAGCCGCTTTACGAAACGCACGTTCAGGCCGCC 340
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TCAAATCCTAAGCCAGAGTTCATTTTCGAGCCGCTTTACGAAACGCACGTTCAAGCCGCC 300
Query 341 GTTCTTTGCGCCAAGAAGCTGAAGCTTCACTTGCGGTTAAGAAGCGGTGGTCATGACTAC 400
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GTTCTTTGCGCCAAGAAGTTGAAGCTTCACTTGCGGCTAAGAAGCGGTGGTCATGACTAC 360
Query 401 GAAGGCCTCTCTTACGTCTCGGAGATGGAAACGGCGTTTGTGATCGTCGACTTGTCCAAG 460
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 361 GAAGGCCTCTCTTACGTCTCGGAGATGGAAACTGCGTTTGTGATCGTCGACTTGTCGAAA 420
Query 461 CTTAGACAGATCAGTGTTGATATAGAAAGTAACAGCGCGTGGGTTCACGCTGGTGCTTCT 520
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CTTAGACAGATCAGTGTTGATATAGAAAGTAACAGCGCGTGGGTTCACGCGGGTGCTTCT 480
Query 521 ATTGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCAAAATCCACGGTTTTCCGGCGGGT 580
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ATTGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCAAAATCCATGGTTTTCCGGCGGGT 540
Query 581 TTATGCACCAGCCTAGGCATCGGCGGTCACATAATCGGCGGAGCCTATGGTTCAATGATG 640
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 TTATGCACCAGCCTAGGCATCGGCGGTCACATAATCGGCGGAGCCTATGGCTCAATGATG 600
Query 641 CGTAAGTTTGGTCTCGGAGCTGATAACGTCCTCGATGCTAGGATCGTTGACGCTGACGGC 700
|||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 601 CGTAAGTTTGGTCTCGGAGCCGATAACGTCCTCGACGCCAGAATCGTTGACGCTGACGGC 660
Query 701 AAAATCTTGAATCGCGCGGCGATGGGAGAAGACGTTTTCTGGGCGATTCGAGGAGGTGGA 760
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 661 AAAATCTTGAATCGCGCGGCGATGGGAGAAGACGTTTTCTGGGCGATACGAGGCGGAGGC 720
Query 761 GGAGGAAGCTTCGGCGTAATACTTGCCTGGAAAAT-AAAGCTCGTTCCGGTGCCAGAGAT 819
||||||||||||||||| || |||||||||||||| ||| |||||||||||||| ||| |
Sbjct 721 GGAGGAAGCTTCGGCGTTATTCTTGCCTGGAAAATCAAA-CTCGTTCCGGTGCCGGAGGT 779
Query 820 TGTTACGGTGTTTACCGTCACGAGGACGCTTGAGCAAGACGGAACTAAGCTTTTGTACAA 879
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGTTACGGTGTTCACTGTCACGAGGACGCTTGAGCAAGACGGAACTAAGCTTTTGTACAA 839
Query 880 GTGGCAACAAGTCGCTGATAAGCTCGACGAAGATCTCTTTATCCGTGTGATTATTCAGCC 939
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 GTGGCAACAAGTTGCTGATAAGCTTGACGAAGATCTCTTTATCCGTGTGATTATTCAGCC 899
Query 940 GACGAGCAAAACTCCGAAGAGCAAAGAAAGAACTATCTCGACTTCGTACCAAGGCCAATT 999
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 GACGAGCAAAACTCCGAAGAGCAAAGAAAGAACTATCTCAACTTCGTACCAAGGCCAATT 959
Query 1000 TCTCGGCGACGCTAATCGTTTGTTGCAGGTGATGCAAAGGAGTTTCCCACAGCTTGGACT 1059
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCTCGGCGACGCAAATAGGTTGTTGCAGGTGATGCAAAGGAGTTTCCCACAGCTTGGACT 1019
Query 1060 AACGAAGAAAGATTGTTTAGAGACAAGCTGGATCAAATCGGTGATGTACATTGCAGGTTT 1119
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1020 AACGAAGAAAGATTGTTTAGAGACAAGCTGGATCAAATCGGTAATGTACATTGCGGGTTT 1079
Query 1120 TCCAAGCACTGCCCCATCAGAAGCTTTACTCGATGGGAAATCGTTGTTCAAGAATTACTT 1179
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCCAAGCACTGCGCCATCGGAAGCTTTACTCGATGGGAAATCGTTGTTCAAGAATTACTT 1139
Query 1180 CAAAGCCAAGTCAGACTATGTGGAAGAGCCAATTCCAGTAGAGGGATTAGAAGGGTTGTG 1239
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1140 CAAAGCCAAGTCAGACTATGTGGAAGAGCCAATTCCAATAGAAGGATTAGAAGGGTTGTG 1199
Query 1240 GGAGAAGCTTCTAGAAGAGGACTCACCATTGACTATATGGAATCCTTATGGAGGAATGAT 1299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GGAAAAGCTTCTAGAAGAGGACTCACCATTGACTATATGGAATCCTTATGGAGGAATGAT 1259
Query 1300 GGCAAAAATTCCCGAGACAGAGACACCTTTCCCACATAGGAGTGGGACATTGTTCAAGAT 1359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGCGAAAATTCCCGAGACAGAGACACCTTTCCCACATAGGAGTGGGACATTGTTCAAGAT 1319
Query 1360 ACAATGGCTGACTTTGTGGCAAGATGGGAAAACAAGCGAGGCGAAGCATATGGGGTGGAT 1419
|||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1320 CCAATGGTTGACTTTATGGCAAGATGGGAAAGTGAGCGAGGCGAAGCATATGGATTGGAT 1379
Query 1420 GAGGGAAATGTATAGTTACATGGAGCAGTATGTATCGAAAAGCCCGAGATCCGCGTACGT 1479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1380 GAGGGAAATGTATAGTTACATGGAGCAGTATGTGTCGAAAAGCCCGAGATCCGCGTATGT 1439
Query 1480 GAACTATAGAGATCTTGATTTGGGGATGAATGGTAAAGGGAGTGATGCAAGAGAATGGGG 1539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1440 GAACTATAGAGATCTTGATTTGGGGAGGAATGGTAAAGGGAGTGATGCAAGAGAATGGGG 1499
Query 1540 GAATAGGTATTTCAAGGGTAATTTTGAAAGGTTGGTGGAGATTAAAGCTAAGTTTGATCC 1599
||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1500 GAATAAATATTTCAAGGGTAATTTTGAAAGGTTGGTGCAGATTAAAGCTACGTTTGATCC 1559
Query 1600 TGAGAATTTCTTTAGACATGAACAAAGTATTCCTACAGAACTTGAGTGAATTTGGAGTTA 1659
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1560 TGAGAATTTTTTTAGCCATGAACAAAGTATTCCTACGGAACTTGAGTGAATTTGGAGGTA 1619
Query 1660 GACAAGAATAAGAGTGTGGTTTAAGATTTCTCTTAGGAAAGACTTGTTACTTGTGTTTTT 1719
||||| |||||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct 1620 GACAATAATAAGAGTGTG-TTTAAGATTTGTCTTAGAAAAGACTTGTTACTTGTGTTTTT 1678
Query 1720 GTG-CTTTT-------AAACATGGCCAACACACTTGTATTTCAAAATTGTTATCCAATCT 1771
||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1679 GTGTCTTTTTGTTTTTAAACATGATCAACACACTTGTATTTCAATATTGTTATCCAATCT 1738
Query 1772 AATCCCTTATGAGGTCTTAGAA----GTAATGGCAAATTTGGCTAAACCAAATCAAATCA 1827
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1739 AATCCCTTATGAGTTCTTAAAATTAAGTAATGGCAAATTTGGCTAAACCAAATCAAATCA 1798
Query 1828 TATTTGCCTA 1837
||| |||||
Sbjct 1799 AATTCGCCTA 1808
> Ahg934079 jgi|Araly1|934079|scaffold_402067.1
Length=1640
Score = 1175 bits (636), Expect = 0.0
Identities = 1313/1632 (80%), Gaps = 78/1632 (5%)
Strand=Plus/Plus
Query 41 aaaaTGGCGTTT--G-TATTAATG-AATAACACAAACGCGTTTCTTGTAACGCTACTATT 96
|||||||||||| | ||| || | | ||| ||| |||||||||| ||||||||| |
Sbjct 18 AAAATGGCGTTTGCGATATCAAAGCGA-AACGCAACCGCGTTTCTTCTAACGCTAC---T 73
Query 97 ACTATCCCTTTCTTACATTCCATTGTCTTTTTCCACAATCCAACAAGACTTCGTGATGTG 156
|||| || | | ||||||||||||| || || | |||||||| ||||||| |||
Sbjct 74 ACTA-----GTC-TCCGTTCCATTGTCTTTCTCTACGCTACAACAAGATTTCGTGAAGTG 127
Query 157 TCTAGTCGACAACTCCGACGCT-TCCTTTCCAATGGAC-TCATCGTTCTTCACTCA-C-G 212
|| ||||||||||| |||| | || || || || || | ||||| || |||| | |
Sbjct 128 CCTTGTCGACAACTCAGACG-TCTCGTTCCCTAT-AACGGCGTCGTT-TT-TCTCACCGG 183
Query 213 ACCTAAACGCCT-CTTCCTTTAAACTCG-CCTTAGAGA-CGTCAGCTCAAAATCTCCGTT 269
||| ||||| || ||| |||||| | ||| || | | | || || ||||||||||
Sbjct 184 ACCAAAACG-CTACTTTGTTTAAAGAAGAGCTT-GA-ATCAACGGCACAGAATCTCCGTT 240
Query 270 ACTTGATGCCTTCAAATCCTAAGCCAG-AGTTCATTTTCGAGCCGCTT-TACGAAACGCA 327
|||||| ||| ||| | || ||||| | | ||||| |||||||| || ||||| |||||
Sbjct 241 ACTTGACGCCGTCATACCCGAAGCCTGTA-TTCATATTCGAGCC-TTTGTACGAGACGCA 298
Query 328 CGTTCAGGCCGCCGTTC-TTTGCGCCAAGAAGCTGAAGCTTCACTTGCGGTTAAGAAGCG 386
|| || || | || || | || ||||||||||| |||||||| | ||| || | ||||
Sbjct 299 TGTCCAAGCAG-CGGTCGTGTGTGCCAAGAAGCTTCAGCTTCACCTCCGGCTACGTAGCG 357
Query 387 GTGGTCATGACTACGAAGGCCTCTC-TTACGTCTCGGA-GATGGAAACGGCGTTTGTGAT 444
||||||| ||||||||||| ||||| || |||| | || || || ||| ||||||||||
Sbjct 358 GTGGTCACGACTACGAAGGGCTCTCGTT-CGTCGCCGAGGA-CGAGACGCCGTTTGTGAT 415
Query 445 CGTCGACTTGTCCAAGCTTAGACAGATCAG-TGTTGATATAGAAAGTAACAGCGCGTGGG 503
||| || ||||| |||||||||||| || | |||||| | || |||||||| |||||||
Sbjct 416 CGTTGATTTGTCAAAGCTTAGACAGGTC-GACGTTGATTTGGACAGTAACAGTGCGTGGG 474
Query 504 TTCACGCTGGTGCTTCTATTGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCAAAATCC 563
||| ||||||||| | || ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 475 CTCATGCTGGTGCTACCATCGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCCAAACCC 534
Query 564 ACGGTTTTCCGGCGGGTTTATGCACCAGCCTAGGCATCGGCGGTCACATAATCGGCGGAG 623
| ||||| ||||| ||||||||| | ||||| ||||||||||| ||| || |||||||||
Sbjct 535 ATGGTTTCCCGGCTGGTTTATGCTCGAGCCTTGGCATCGGCGGCCACTTAGTCGGCGGAG 594
Query 624 CCTATGGTTCAATGATGCGTAAGTTTGGTCTCGGAGCTGATAACGTCCTCGATGCTAGGA 683
| || ||||| |||||||||||||| |||||||| ||||| || |||||||| || || |
Sbjct 595 CGTACGGTTCCATGATGCGTAAGTTCGGTCTCGGCGCTGACAATGTCCTCGACGCCAGAA 654
Query 684 TCGTTGACGCTGACGGCAAAAT-CTTGAATCGCGCGGCGATGGGAGAAGACGTTTTCTGG 742
| || ||||| ||||| | || |||| ||||||||||||||||||||||||||||||||
Sbjct 655 TTGTCGACGCCAACGGCCAGATCCTTG-ATCGCGCGGCGATGGGAGAAGACGTTTTCTGG 713
Query 743 GCGATTCGAGGAGGTGGAGGAGGAAGCTTCGGCGTAATACTTGCCTGGAAAATAAAGCTC 802
|||||||| || ||||| || || ||||||||||| ||||| |||||||| || ||||||
Sbjct 714 GCGATTCGCGGTGGTGGCGGTGGTAGCTTCGGCGTGATACTCGCCTGGAAGATCAAGCTC 773
Query 803 GTTCCGGTGCCAGAGATTGTTACGGTGTTTACCGTCACGAGGACGCTTGAGCAAGACGGA 862
|| || || || | || |||||||| || || ||||||| |||||||||||||||||||
Sbjct 774 GTCCCCGTTCCGGCGACCGTTACGGTATTCACAGTCACGAAGACGCTTGAGCAAGACGGA 833
Query 863 ACTAA-GCTTTTGTACAAGTGGCAACAAGTCGCTGATAAGCTCGACGAAGATCTCTTTAT 921
||||| | |||| ||||| ||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 834 ACTAAAG-TTTTATACAAATGGCAACAAGTCGCTGATAAGCTTGACGATGATCTCTTCAT 892
Query 922 CCGTGTGATTATT-CAGCCGACGAGCAAAACT-CCGAAGAGCAAAGAAA--GAACTATCT 977
|| || |||||| | |||| |||| |||||| || || | | |||| |||| ||||
Sbjct 893 TCGCGTCATTATTTC-GCCGGCGAGTAAAACTACC-AA-ACCGG-GAAATCGAACCATCT 948
Query 978 CGACT-TCGTACCAAGGC-CAATTTCTCGGCGACGCTAATCGTTTGTTGCAGGTGATGCA 1035
| | | |||||||||| | || |||||||||||| | ||||| | ||||||||||||||
Sbjct 949 CTA-TGTCGTACCAAG-CTCAGTTTCTCGGCGACTCGAATCGGCTCTTGCAGGTGATGCA 1006
Query 1036 -AAGGAGTTTCCCACAGCTTGGACTAACGAAGAAAGATTGTTTAGAGACAAGCTGGATCA 1094
||| |||||||| |||| ||||| |||||||| || || ||||| ||||||||||
Sbjct 1007 GAAG-AGTTTCCCTGAGCTAGGACTGACGAAGAAGGACTGCACAGAGATGAGCTGGATCA 1065
Query 1095 AATCGGTGATGTACATTGCAGGTTTTCCAAGCACTGCCCCATCAGAAGCTTTACTCGATG 1154
|| | ||||||||||||||||| ||||||| || ||| ||| ||||||||||||| | ||
Sbjct 1066 AAGCAGTGATGTACATTGCAGGATTTCCAAACAGTGCACCACCAGAAGCTTTACTAGCTG 1125
Query 1155 GGAAATCGTTGTTCAAGAATTACTTCAAAGCCAAGTCAGACTATGTGGAAGAGCCAATTC 1214
| ||||| |||||||||||| ||||||| ||||||||||||| |||| ||||||||||||
Sbjct 1126 GAAAATCATTGTTCAAGAATCACTTCAAGGCCAAGTCAGACTTTGTGAAAGAGCCAATTC 1185
Query 1215 CAGTAGAGGGATTAGAAGGGTTGTGGGAGAAGCTT-CTAGAAGAGGACTCACCATTGACT 1273
||||||| || |||||||| || ||||| ||| || |||||||| || || || | ||
Sbjct 1186 CAGTAGAAGGTTTAGAAGGATTATGGGA-AAGGTTTCTAGAAGAAGATTCGCCGCTAACG 1244
Query 1274 ATATGGAATCCTTATGGAGGAATGATGGCAAAAAT-TCCCGAGACAGAGACACCTTTCCC 1332
|||||||| ||||| |||||||||||| | | || ||| ||| |||||| |||||||||
Sbjct 1245 ATATGGAACCCTTACGGAGGAATGATGTCGAGGATCTCC-GAGTCAGAGATACCTTTCCC 1303
Query 1333 ACATAGGAGTGGGACATTGTTCAAGATACAATGGCTGA-CTTTGTGGCAAGATGGGAAAA 1391
||||| | ||||| ||||||||||| || ||||| | | ||||||||||||||||
Sbjct 1304 TCATAGAAACGGGACGTTGTTCAAGATTCAGTGGCTAAGCAC-GTGGCAAGATGGGAAAG 1362
Query 1392 CAAGCGAGGCGAAG-CATATGGGGTGGATGAGGGAAATGTATAGTTACATGGAGCAGTAT 1450
|| ||| | ||| |||||| |||||| |||||||||||||||||||||||||| ||
Sbjct 1363 TGAGTGAGAC-AAGGCATATGAAGTGGATTAGGGAAATGTATAGTTACATGGAGCAATAC 1421
Query 1451 GTATCGAA-AAGCCCGAGATCCG-CGTACGTGAACTATAGAGATCTTGATTTGGGGATGA 1508
|| ||||| || ||||||| | | | || ||||| || || |||||||||||||||| ||
Sbjct 1422 GTGTCGAAGAA-CCCGAGA-CAGGCCTATGTGAATTACAGGGATCTTGATTTGGGGACGA 1479
Query 1509 ATGGTAAAG-G-GAGTGATGCAAGAGAATGGGG-GAATAGGTATTTCAA-GGGTAATTTT 1564
||| || | | ||||||||| ||||| ||||| | || ||||| ||| ||| |||||
Sbjct 1480 ATG--AAGGAGAGAGTGATGCTAGAGAGTGGGGTGC-TAAGTATTACAAAGGG-AATTTC 1535
Query 1565 GAAAGGTTGGTGGAGATTAAAGCTAAGTTTGATCCTGAGAATTTCTTTAGACATGAACAA 1624
|| ||||||||| ||||||| | | ||||||||||||| |||||||| || |||||||||
Sbjct 1536 GAGAGGTTGGTGAAGATTAAGGGTGAGTTTGATCCTGACAATTTCTTCAGGCATGAACAA 1595
Query 1625 AGTATTCCTACA 1636
||| |||| |||
Sbjct 1596 AGTGTTCCCACA 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5