BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30780.1
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473308 jgi|Araly1|473308|fgenesh2_kg.1__3262__AT1G30780.1 632 2e-180
> Ahg473308 jgi|Araly1|473308|fgenesh2_kg.1__3262__AT1G30780.1
Length=1380
Score = 632 bits (342), Expect = 2e-180
Identities = 418/455 (92%), Gaps = 4/455 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCACTTTCACTTGTTCTTAGATACGTCGTCTTTTTGAGTTTCTTCATACTCCAA 60
|||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| ||
Sbjct 1 ATGGCATCACTTTCACTTGTGCTTAGATACGTCGTCGTTTTAACTTTCTTCATACTCGAA 60
Query 61 AAGCCCAAAGAAACATTTTCTTCACGACTA-CAGAGATCCCAC-GCTAAAGTAGCTCAGA 118
|| ||||| |||||||||||||| |||||| | |||| ||| | ||||||||||||||||
Sbjct 61 AACCCCAAGGAAACATTTTCTTCGCGACTAGC-GAGA-CCCCCAGCTAAAGTAGCTCAGA 118
Query 119 TTGGAGCCGACGATTATCCATCTTCTGGTCGTAATACACCGGTCCACGACCTTGGATTCC 178
|||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 119 TTGGAGCCGATGATTATCCATCTTCCGGTCGTAGTACACCGGTCCACGACCTTGGATTCC 178
Query 179 CTGACTTCCCTTCTTTCCAAGAAGCAGTGGCGCCACCACCGCCTCCGCCTGATCTTCCTC 238
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 CTGACTTCCCTTCTTTCCAAGAAGCAGTGGCACCACCACCGCCTCCGCCTGATCTTCCTC 238
Query 239 TCCTAGCGCCGCCTCTGCCTGATGTGCCTCTCCTTCCACCGCCGGCATTTCCTGATTTTG 298
||||| ||||||||||||||||| || ||||||||||||| ||||||||| ||||| ||
Sbjct 239 TCCTACCGCCGCCTCTGCCTGATCTGGCTCTCCTTCCACCACCGGCATTTTCTGATCCTG 298
Query 299 AGAAACCTAGGTTACCGGTTCCGGTTTGGCCTTCACTCCCCGAGTACCCGCCCTTTCCAT 358
|||| ||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 299 AGAAGCCTAGGTTATCGGTTCCGGTTTGGCCTTCACTACCCGATTTCCCGCCCTTTCCAT 358
Query 359 TTGTAGATCAGTCTGCTCCTTACCAAGGCTTCGCTCCGAGATTTGATGAGTCCGCTAATT 418
| ||||||||| ||||||||| |||| ||||||||||||||| |||||||||| |||||
Sbjct 359 TCGTAGATCAGGCTGCTCCTTCCCAACACTTCGCTCCGAGATTCGATGAGTCCGATAATT 418
Query 419 GGATGCCTTCTACCCCAAGCATCCCTCAAGTGTTT 453
||||||||||||||||||| |||||||||||||||
Sbjct 419 GGATGCCTTCTACCCCAAGTATCCCTCAAGTGTTT 453
Score = 577 bits (312), Expect = 9e-164
Identities = 487/566 (86%), Gaps = 33/566 (6%)
Strand=Plus/Plus
Query 613 AAGAAACTCCTTTGTCGAGTCGAATCATCTGAGGTTTGCTTTGGAGATGGTAATGAGAAA 672
|||||||||||||| ||||| | | |||||||||||| ||||||||| ||||||||||
Sbjct 538 AAGAAACTCCTTTGCCGAGT-GGA--ATCTGAGGTTTGTTTTGGAGATCATAATGAGAAA 594
Query 673 GACACAAACCCAAGTGAGATAGATTTAGATTCGCTCCCTTTTGATCTAAAGATGGTTATA 732
||||||||||| | || ||| |||||||||||||| ||||||||||||||| ||||
Sbjct 595 GACACAAACCC---T-AGCGAGA--TAGATTCGCTCCCTCTTGATCTAAAGATGGCTATA 648
Query 733 CTTACTAGATTGTCTGCCAAGTCTCTTACGAATTTCAAACGCGTCTCTAAAATGTGGTCT 792
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 649 CTTACTAGATTGCCTGCCAAGTCTCTTACGAATCTCAAACACGTCTCTAAAATGTGGTCT 708
Query 793 TCCATCATCGGAAGCCAAAGATTCATCGATTCCTTCTTCACTATGTCCTCGAAGCAATCA 852
||||||||| |||||| | |||||||||||| ||||||| || ||||| || | |
Sbjct 709 TCCATCATCCGAAGCCGAGGATTCATCGATTACTTCTTCTCTGTGTCCACG--G-----A 761
Query 853 CGATGTCCT-AAGTTTCCTGTTAACACTCGATTCGTGGGATACGATCCGATTGATGATCA 911
|| ||| | ||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 762 GGAAGTCATAAAGTTACCCGTTAACACCCGATTCGTGGGATACGATCCGATTGATGATCA 821
Query 912 ACAAAAAGCATTGTCTGTATCT-GTGCCGTCG--AGA--A-AGAGA-AATCTAGAGCACA 964
||| ||||| | | ||| | |||| |||| | | | || || ||||||||||||
Sbjct 822 ACACAAAGC---G--T-TAT-TAGTGCAGTCGATAAATCATAGTGATCATCTAGAGCACA 874
Query 965 AGGTCTTAACACTAGGGGGAGGTGGTCAAGGATGGAGACACATTGAAGTTACCAATGCGC 1024
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 875 AGGTCTTAACACTAGGGGGAGGTGGTCAAGGATGGAGACACATCGAAGGTACCACTGCGC 934
Query 1025 CTTTTAGCCCGGTAACTGTGGGAGTAAGCATCGATGGTTTTGTCTACTATGGTGCTTATA 1084
||| ||||||| || | ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 935 CTTATAGCCCGATATCAGTGGGAGTATGCATCAATGGTTTTGTCTACTATGGTGCTTATA 994
Query 1085 GCCCAACCCCACCTATGAATCCAGTTTTGGTGTGTTTTGATGTTAGGTCTGAGAAGATAA 1144
| | || || |||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 995 GTCGAAACCGACCTATCAATCCAGTTATGGTGTGTTTTGAGGTTAGGTCTGAGAAGATAA 1054
Query 1145 GTTTTATCAAAGCTCCT-AATGATGT 1169
||||||||||||||||| || |||||
Sbjct 1055 GTTTTATCAAAGCTCCTGAA-GATGT 1079
Score = 379 bits (205), Expect = 3e-104
Identities = 235/249 (94%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 1182 TTTTGATTTATGGATTCTAGAAGACGTTGAGAGACATGAATGGTCAAAGCAAACATGTGT 1241
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1131 TTTTGATTTATGGATACTAGAAGACGTTGAGAAACATGAATGGTCAAAGCAAACATGTGT 1190
Query 1242 GTTTCCCTCCTCTGTCGCGTGGGATTATGTTGGGGATATCCAAATGTCTTTTCCAGGCAC 1301
||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||
Sbjct 1191 GTTTCCCTCCTCTGT-G--TGGGATGATGTTGGGGATATCAAAATGTCTTTTCCAGGCAC 1247
Query 1302 CAACAAGGCTGGAATTGGAGACGATGAAGAATTTAGGCGCTGTTCCGGATTCGTAGACGA 1361
||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 1248 CAACAAGGCTGGAATCGGAGACGATGAAGAATTTAGGCGCTCTTCTGGATTCGTAGACAA 1307
Query 1362 GGGTGAATGTCATGTCCGCATCGCACCTCAACATGTAGAGAGTATTGCCCGTTTTAAGGA 1421
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1308 GGGTGAATGCCATGTCCGCATCGCACCTCAACATGTCGAGAGTATTGCCCATTTTAAGGA 1367
Query 1422 TCCTATCAT 1430
|||||||||
Sbjct 1368 TCCTATCAT 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5