BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30780.1 Length=1449 Score E Sequences producing significant alignments: (Bits) Value Ahg473308 jgi|Araly1|473308|fgenesh2_kg.1__3262__AT1G30780.1 632 2e-180 > Ahg473308 jgi|Araly1|473308|fgenesh2_kg.1__3262__AT1G30780.1 Length=1380 Score = 632 bits (342), Expect = 2e-180 Identities = 418/455 (92%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 1 ATGGCATCACTTTCACTTGTTCTTAGATACGTCGTCTTTTTGAGTTTCTTCATACTCCAA 60 |||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| || Sbjct 1 ATGGCATCACTTTCACTTGTGCTTAGATACGTCGTCGTTTTAACTTTCTTCATACTCGAA 60 Query 61 AAGCCCAAAGAAACATTTTCTTCACGACTA-CAGAGATCCCAC-GCTAAAGTAGCTCAGA 118 || ||||| |||||||||||||| |||||| | |||| ||| | |||||||||||||||| Sbjct 61 AACCCCAAGGAAACATTTTCTTCGCGACTAGC-GAGA-CCCCCAGCTAAAGTAGCTCAGA 118 Query 119 TTGGAGCCGACGATTATCCATCTTCTGGTCGTAATACACCGGTCCACGACCTTGGATTCC 178 |||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 119 TTGGAGCCGATGATTATCCATCTTCCGGTCGTAGTACACCGGTCCACGACCTTGGATTCC 178 Query 179 CTGACTTCCCTTCTTTCCAAGAAGCAGTGGCGCCACCACCGCCTCCGCCTGATCTTCCTC 238 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 179 CTGACTTCCCTTCTTTCCAAGAAGCAGTGGCACCACCACCGCCTCCGCCTGATCTTCCTC 238 Query 239 TCCTAGCGCCGCCTCTGCCTGATGTGCCTCTCCTTCCACCGCCGGCATTTCCTGATTTTG 298 ||||| ||||||||||||||||| || ||||||||||||| ||||||||| ||||| || Sbjct 239 TCCTACCGCCGCCTCTGCCTGATCTGGCTCTCCTTCCACCACCGGCATTTTCTGATCCTG 298 Query 299 AGAAACCTAGGTTACCGGTTCCGGTTTGGCCTTCACTCCCCGAGTACCCGCCCTTTCCAT 358 |||| ||||||||| |||||||||||||||||||||| ||||| | |||||||||||||| Sbjct 299 AGAAGCCTAGGTTATCGGTTCCGGTTTGGCCTTCACTACCCGATTTCCCGCCCTTTCCAT 358 Query 359 TTGTAGATCAGTCTGCTCCTTACCAAGGCTTCGCTCCGAGATTTGATGAGTCCGCTAATT 418 | ||||||||| ||||||||| |||| ||||||||||||||| |||||||||| ||||| Sbjct 359 TCGTAGATCAGGCTGCTCCTTCCCAACACTTCGCTCCGAGATTCGATGAGTCCGATAATT 418 Query 419 GGATGCCTTCTACCCCAAGCATCCCTCAAGTGTTT 453 ||||||||||||||||||| ||||||||||||||| Sbjct 419 GGATGCCTTCTACCCCAAGTATCCCTCAAGTGTTT 453 Score = 577 bits (312), Expect = 9e-164 Identities = 487/566 (86%), Gaps = 33/566 (6%) Strand=Plus/Plus Query 613 AAGAAACTCCTTTGTCGAGTCGAATCATCTGAGGTTTGCTTTGGAGATGGTAATGAGAAA 672 |||||||||||||| ||||| | | |||||||||||| ||||||||| |||||||||| Sbjct 538 AAGAAACTCCTTTGCCGAGT-GGA--ATCTGAGGTTTGTTTTGGAGATCATAATGAGAAA 594 Query 673 GACACAAACCCAAGTGAGATAGATTTAGATTCGCTCCCTTTTGATCTAAAGATGGTTATA 732 ||||||||||| | || ||| |||||||||||||| ||||||||||||||| |||| Sbjct 595 GACACAAACCC---T-AGCGAGA--TAGATTCGCTCCCTCTTGATCTAAAGATGGCTATA 648 Query 733 CTTACTAGATTGTCTGCCAAGTCTCTTACGAATTTCAAACGCGTCTCTAAAATGTGGTCT 792 |||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 649 CTTACTAGATTGCCTGCCAAGTCTCTTACGAATCTCAAACACGTCTCTAAAATGTGGTCT 708 Query 793 TCCATCATCGGAAGCCAAAGATTCATCGATTCCTTCTTCACTATGTCCTCGAAGCAATCA 852 ||||||||| |||||| | |||||||||||| ||||||| || ||||| || | | Sbjct 709 TCCATCATCCGAAGCCGAGGATTCATCGATTACTTCTTCTCTGTGTCCACG--G-----A 761 Query 853 CGATGTCCT-AAGTTTCCTGTTAACACTCGATTCGTGGGATACGATCCGATTGATGATCA 911 || ||| | ||||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct 762 GGAAGTCATAAAGTTACCCGTTAACACCCGATTCGTGGGATACGATCCGATTGATGATCA 821 Query 912 ACAAAAAGCATTGTCTGTATCT-GTGCCGTCG--AGA--A-AGAGA-AATCTAGAGCACA 964 ||| ||||| | | ||| | |||| |||| | | | || || |||||||||||| Sbjct 822 ACACAAAGC---G--T-TAT-TAGTGCAGTCGATAAATCATAGTGATCATCTAGAGCACA 874 Query 965 AGGTCTTAACACTAGGGGGAGGTGGTCAAGGATGGAGACACATTGAAGTTACCAATGCGC 1024 ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| Sbjct 875 AGGTCTTAACACTAGGGGGAGGTGGTCAAGGATGGAGACACATCGAAGGTACCACTGCGC 934 Query 1025 CTTTTAGCCCGGTAACTGTGGGAGTAAGCATCGATGGTTTTGTCTACTATGGTGCTTATA 1084 ||| ||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 935 CTTATAGCCCGATATCAGTGGGAGTATGCATCAATGGTTTTGTCTACTATGGTGCTTATA 994 Query 1085 GCCCAACCCCACCTATGAATCCAGTTTTGGTGTGTTTTGATGTTAGGTCTGAGAAGATAA 1144 | | || || |||||| ||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 995 GTCGAAACCGACCTATCAATCCAGTTATGGTGTGTTTTGAGGTTAGGTCTGAGAAGATAA 1054 Query 1145 GTTTTATCAAAGCTCCT-AATGATGT 1169 ||||||||||||||||| || ||||| Sbjct 1055 GTTTTATCAAAGCTCCTGAA-GATGT 1079 Score = 379 bits (205), Expect = 3e-104 Identities = 235/249 (94%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 1182 TTTTGATTTATGGATTCTAGAAGACGTTGAGAGACATGAATGGTCAAAGCAAACATGTGT 1241 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1131 TTTTGATTTATGGATACTAGAAGACGTTGAGAAACATGAATGGTCAAAGCAAACATGTGT 1190 Query 1242 GTTTCCCTCCTCTGTCGCGTGGGATTATGTTGGGGATATCCAAATGTCTTTTCCAGGCAC 1301 ||||||||||||||| | |||||| |||||||||||||| ||||||||||||||||||| Sbjct 1191 GTTTCCCTCCTCTGT-G--TGGGATGATGTTGGGGATATCAAAATGTCTTTTCCAGGCAC 1247 Query 1302 CAACAAGGCTGGAATTGGAGACGATGAAGAATTTAGGCGCTGTTCCGGATTCGTAGACGA 1361 ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| | Sbjct 1248 CAACAAGGCTGGAATCGGAGACGATGAAGAATTTAGGCGCTCTTCTGGATTCGTAGACAA 1307 Query 1362 GGGTGAATGTCATGTCCGCATCGCACCTCAACATGTAGAGAGTATTGCCCGTTTTAAGGA 1421 ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1308 GGGTGAATGCCATGTCCGCATCGCACCTCAACATGTCGAGAGTATTGCCCATTTTAAGGA 1367 Query 1422 TCCTATCAT 1430 ||||||||| Sbjct 1368 TCCTATCAT 1376 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54202418635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5