BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30790.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473309 jgi|Araly1|473309|fgenesh2_kg.1__3263__AT1G30790.1 1014 0.0
Ahg356527 jgi|Araly1|356527|fgenesh1_pg.C_scaffold_8000314 65.8 8e-10
> Ahg473309 jgi|Araly1|473309|fgenesh2_kg.1__3263__AT1G30790.1
Length=1575
Score = 1014 bits (549), Expect = 0.0
Identities = 731/815 (90%), Gaps = 27/815 (3%)
Strand=Plus/Plus
Query 546 TGTAGAGCACTTGGTGTTGACTCTAAAAGGCGACAAGAAAAATTACTCATGGAGGCAAAT 605
|||||||||||||||||| ||||||||||| || || ||||| |||||||||||||||||
Sbjct 762 TGTAGAGCACTTGGTGTTAACTCTAAAAGGTGATAAAAAAAAGTACTCATGGAGGCAAAT 821
Query 606 CCAAGGAAACAACAACATTCCACCTTATTCCCCTGTGACTATGAGAGTATGCATCAACGG 665
|||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 822 CCAAGGTAACAACAACATTCCACCTTATTCACCTGTAACTATGAGAATATGCATCAACGG 881
Query 666 GGTTGTGTATTATGGTGCTTGGACTCCAAGACAAAGTATGAATGCAGTGATCGTTTGTTT 725
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 882 GGTTGTGTATTATGGTGCTTGGACTCCAAGACTACGTATGAATGCAGTGATCGTTTGTTT 941
Query 726 TGATGTTAGATCCGAGAAGATAACTTTTATCAAAACACCTAAGGATGTCGTA-AGATGGT 784
| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 942 TCATGTTAGATCCGAGAAGATAACTTTTATCAAAGCACCTAAGGATGTCGTACA-ATGGT 1000
Query 785 GCAATGATTCAATTTTGATGGAATATAAAGGGAAGTTAGCTTCCATTGTAAGAAACCGTT 844
| ||| |||||| |||||||||| ||||||||||||||||||||| ||||| ||| ||
Sbjct 1001 GGGCTGAATCAATTCTGATGGAATACAAAGGGAAGTTAGCTTCCATTTTAAGACACCCTT 1060
Query 845 ATTCTCGTTTCGATACTTTTGATTTGTGGGTGTTAGAAGATATCGAGAAACAAGAATGGT 904
|| |||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1061 ATGCTCGTTTCGATAGTTTTGATTTGTGGGTGTTAGAAGATATCGAGAAGCATGAATGGT 1120
Query 905 CAAAGCAAACATGTGAGATTCCTCTCTCTGTGTGGGATTCTGTTGAGAACTTTAACATGT 964
| ||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct 1121 CTAAGCAAACATGTGAGATTCCTTTCTCTGTGTGGGATTCTATTGAGGACGGTAACATGT 1180
Query 965 CTTTTCCAGGTATTAACAAGTTTGGTGAGATCATTCTAGCACCAACATGCTTGTCAGGCT 1024
||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||
Sbjct 1181 CTTTTCCAGGTATTAACAAGTTTGGTGAGATAATTCTAGCACCGACATTCTTGTCACGCT 1240
Query 1025 ATCATCTTCGATCCTTCTACATTTTCTATTACCATGTAGAAACAAAGAAGATTAGAAGAG 1084
||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1241 ATCATCTTCGACCCTTCTACATTTTCTACTACCATGTAGAAACAAAGAACATTAGAAGAG 1300
Query 1085 TTAGGCTTGAAGGAATTGCAGATGATGAAAATTTTAGGCGGTGCTATGGAATTGGAA-G- 1142
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1301 TTAGGCTTGAAGGAATTGCAGATGATGAAAATTTTAGGCGGTGTTATGGAATTGGAAAGA 1360
Query 1143 -TG--G-TCAATGTAACGTCTTTATCTCACCGGAACATGTTGAAACTATAAGGTTTCTGT 1198
|| | || ||||||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 1361 ATGTTGGTCCATGTAACGTCTTTATCTCACCTGAACATGTTGAAACTTTAAGGTTTTTGT 1420
Query 1199 AATGT-T-TCTTTATTCAAGGATATGTCATGTTTGCTTCTTTTGTTT-A------CTCA- 1248
||||| | | ||||||||||||| |||| | ||||||| |||| ||| | ||||
Sbjct 1421 AATGTGTATTTTTATTCAAGGATGTGTCCTATTTGCTTTTTTTTTTTTATATATACTCAA 1480
Query 1249 CATGTATGTGTTGATTTCTAGGTACCAAACAAATTGGTTTGATACTATGGGAT---CT-- 1303
||| ||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||
Sbjct 1481 CATATATATGTTGATTTTTAGGTACCAAACAAATTGTTTTGATACTTTGGGATTTGCTAG 1540
Query 1304 -TG---AACAAAAGAAATGATGTGTTGTCTAAAAC 1334
|| |||| || |||||||||||||||||||||
Sbjct 1541 ATGTTGAACATAATAAATGATGTGTTGTCTAAAAC 1575
Score = 699 bits (378), Expect = 0.0
Identities = 494/549 (90%), Gaps = 12/549 (2%)
Strand=Plus/Plus
Query 1 ATGAAACGTC-AGGAGATAGATCATATCCCCT-TTGATCTAACGGTGGAGATTCTCACCA 58
|||||||| | |||||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 1 ATGAAACG-CAAGGAGATAGATCATAT-CCCTCTTGATCTAACGGTGGAGATTCTCACAA 58
Query 59 GATTACCAGCCAAATCTCTTATGAAGTTCAAATGCGTTTCCAAGTTATGGTCGTCCATTA 118
||||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||
Sbjct 59 GATTACCAGCCAAGTCTCTTTTGAGGTTCAAATGCGTTTCCAAGTTGTGGTCGTCCATTA 118
Query 119 TCCATAA-CCAAAGCTTCATCGATTCCTTCTACTCCATTTCCTCAACACGACCACGGTTT 177
|||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 119 TCCA-AAGCCAAGGCTTCATCGATTCCTTCTACTCCATTTCCTCTACACGACCACGGTCT 177
Query 178 ATAGTCGCTTTCAGCAACGGTTCATTTC-CC-AGTGATAAGGAGAAGCGTTTGTTCATCT 235
||||||||||||| |||||||| | ||| || || ||| |||| |||||||| |||||||
Sbjct 178 ATAGTCGCTTTCACCAACGGTTTA-TTCGCCAAG-GATGAGGACAAGCGTTTTTTCATCT 235
Query 236 TCTCGTCCTCACACGAGGGACATGAATCTTCTTCTTCAGTGATAACCAATCTCGATA-CG 294
||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 236 TCTCGTCTTCACAAGAGGGACATGAATCTTCTTCTTCTGTGATAAACAATCTCGATATC- 294
Query 295 ACAATACCTTCTCTAACTGTTTCTAATAACCTTGCGTCACGGTGTATTTCCGTCAATGGT 354
|||||||||||| |||| |||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 295 ACAATACCTTCTTTAACCGTTTGTAATAACCCTGCGTCACGGTGTGTTTCCGTCAATGGT 354
Query 355 TTTATAGCCTGTTCACTTTACACAAGATTCACGATATGTAACCCTAGCACTAGACAAGTC 414
||| | |||||||||||| ||||| | ||| ||||||||||||||||||||||||||||
Sbjct 355 TTTGTGGCCTGTTCACTTAACACAGGGCTCATGATATGTAACCCTAGCACTAGACAAGTC 414
Query 415 ATTGTCTTACCAATCTTACCCTCAGGTCGTGCTCCAGATATGAGAAGCACATGTATAGGG 474
||||||||||||||||||||| || ||| |||||| | |||||| ||| |||| |||||
Sbjct 415 ATTGTCTTACCAATCTTACCCCCACGTCACGCTCCAAAAATGAGAGGCAGATGTCTAGGG 474
Query 475 TATGATCCGGTGGATGATCAATTCAAAGCTTTGGCTCTTATTTCTTCTTGCATACCTAAT 534
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 475 TATGATCCGGTGGATGATCAATTCAAAGCTTTGGCTCTCATTTCTTCTCGCTTACCTAAT 534
Query 535 AAAGATAGT 543
|| |||||
Sbjct 535 AATTATAGT 543
> Ahg356527 jgi|Araly1|356527|fgenesh1_pg.C_scaffold_8000314
Length=2625
Score = 65.8 bits (35), Expect = 8e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 382 TTCACGATATGTAACCCTAGCACTAGACAAGTCAT 416
|||||||||||||||||||||||||||||||||||
Sbjct 1831 TTCACGATATGTAACCCTAGCACTAGACAAGTCAT 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5