BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30795.1
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473310 jgi|Araly1|473310|fgenesh2_kg.1__3264__AT1G30795.1 771 0.0
> Ahg473310 jgi|Araly1|473310|fgenesh2_kg.1__3264__AT1G30795.1
Length=558
Score = 771 bits (417), Expect = 0.0
Identities = 529/579 (91%), Gaps = 23/579 (4%)
Strand=Plus/Plus
Query 17 TTATGGCATATGGTGCTATAAACAAACACACTTACCACGCTTGATCCTACAACACATGAA 76
|||||||||||||| ||||||| ||||||||||| | | ||||||| | |||||||||||
Sbjct 2 TTATGGCATATGGTCCTATAAATAAACACACTTA-C-CTCTTGATCATGCAACACATGAA 59
Query 77 CCATGGCTTCTTCAACCCACTCTTACTTCACCACTTTAGCACTAACCCTAATCTTGATCT 136
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 GTATGGCTACTTCAACCTACTCTAACTTCACCACTTTAGCACTAACCCTAATCTTGATCT 119
Query 137 TTCGTCTCATACCAGAAACCACCGCATCACGCCATCTGAATGGAAAGAATCCGGCGGTAA 196
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCGTCTGATACCGGAAACCACCGCATCACGCCATCTGAATGGAAAGAATCCGGCGGTAC 179
Query 197 TTGGAGTTACCACTACTAGCGAGAAATACATTGTTCCTAC-GCCGTTACCACCGTTTTTA 255
||||||| |||||||||||||||||||||||||||||| | |||| | ||||||||||
Sbjct 180 TTGGAGTCACCACTACTAGCGAGAAATACATTGTTCCT-CGGCCG-T--CACCGTTTTTT 235
Query 256 CGACCCTTTTTCCCACCGTTACAGTTTGCCGCTGCACCGTTCGGAGGGAATATCCCACAA 315
||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 236 CGACCGTTTTTCCCACCGTTACCGTTTGCCCCTGCACCGTTCGGAGGGAATATCCCACGA 295
Query 316 CCACCGTTACCTTCACCACCTCCAACATTTCTACCGTGTCTCCCAGGTTTCAAGTTTCCT 375
||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 296 CCACCGTTACCTT---CACCTCCAACATTTCTACCGCGTCTCCGAGGTTTCAAGTTTCCT 352
Query 376 CCCTTTCAGTCCCGAAAGCCTACGCCGCCGTAATCGTATATACGTTGACGGCATCAAGTC 435
||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 353 CCCTTTCCGTTCCGAAAGCCAACGCCGCCGTAATCG--TATACGTTGACGGCATCAAGTC 410
Query 436 TAAAACTGTAATGAAATATTAAACTATCTACTTTAATGTATTATCTATCTCTATATATCA 495
||||||||||||| || | |||| |||||||||||||||||| |||||||||||||||||
Sbjct 411 TAAAACTGTAATG-AA-A-TAAATTATCTACTTTAATGTATTTTCTATCTCTATATATCA 467
Query 496 CCGTTGATCATCTATAAATAATTGATGGTAATATCATGGTATGAAACTGTAATAAAGATC 555
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CCGTTGATCATC--T--ATAATTGATGGTAATATCATGGTATGAAACTGTAATAAAGATC 523
Query 556 ACTGGTGTAGTAATTAATAAATTGAATAAATACTATGTT 594
|||||||||||||| | || ||||||| ||||||||||
Sbjct 524 ACTGGTGTAGTAAT-A-TA--TTGAATACATACTATGTT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21824996908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5