BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30810.1
Length=4156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336188 jgi|Araly1|336188|fgenesh1_pg.C_scaffold_1002753 2822 0.0
Ahg473311 jgi|Araly1|473311|fgenesh2_kg.1__3265__AT1G30800.1 1077 0.0
Ahg949915 jgi|Araly1|949915|scaffold_801802.1 213 9e-54
> Ahg336188 jgi|Araly1|336188|fgenesh1_pg.C_scaffold_1002753
Length=2544
Score = 2822 bits (1528), Expect = 0.0
Identities = 1739/1842 (94%), Gaps = 10/1842 (1%)
Strand=Plus/Plus
Query 333 CTCCATTAGAATCTGAGATCAAAGAGGATATGTCTTTGAAGAATCATCCTCCAGACAAGG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 CTCCATTAGAATCTGAGATCAAAGAGGATATGTCTTTGAAGAATCATCCTCCAGACAAGG 82
Query 393 ATAAGGACAAAGACACTATCATGGAACAACCTAGTAGTCCACGTCATCGGAAGGTTGTTG 452
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 83 ATAAGGACAAGGACACTATTATGGAACAACCTAGTAGTCCACGTCATCGGAAGGTTGTTG 142
Query 453 CTAGATGGTTACCT-GATGAAGCACAGAGGCCAATTATCAATGACGCTCCCGTATTCACT 511
||||||||||| || |||||||| |||||||| |||||| |||| ||||| ||||||||
Sbjct 143 CTAGATGGTTA-CTGGATGAAGCGCAGAGGCCGATTATCGATGAAGCTCCGGTATTCACC 201
Query 512 CCATCACTAGAGGAGTTTGTAGATCCACTTGCGTATATCGAGAAGATACGTCCACTAGCA 571
|||||| |||||||||||| |||| ||||||| |||||||| ||||||||||||||||||
Sbjct 202 CCATCATTAGAGGAGTTTGAAGATACACTTGCTTATATCGAAAAGATACGTCCACTAGCA 261
Query 572 GAGCCGTATGGTATCTGTCGAATCATCCCACCATCGACATGGAAGCCTCCTTGCCGGCTT 631
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 262 GAGCCGTTTGGTATCTGTCGAATCATCCCACCATCGACATGGAAACCTCCTTGCCGGCTT 321
Query 632 AAGGAGAAGAGTATATGGGAGCAGACAAAGTTTCCTACTCGGATTCA-AACCGTAGACCT 690
|||||||||| |||||||||||| ||||||||||| || |||||||| || ||| |||||
Sbjct 322 AAGGAGAAGAATATATGGGAGCAAACAAAGTTTCCCACCCGGATTCAGAA-CGTCGACCT 380
Query 691 GCTTCAGAACCGTGAGCCGATGA-AGAAGAAACCGAAGAGTAGAAAGCGGAAACGGAGAA 749
|||||||||||| |||||||||| | |||||||| ||||||||||| |||||| ||||||
Sbjct 381 GCTTCAGAACCGCGAGCCGATGACA-AAGAAACCAAAGAGTAGAAAACGGAAAAGGAGAA 439
Query 750 GAAACTCGAGAATGGGTTCGTCTAAGAGACGATCTGGTTCTTCTCCCGCTGAATCGACTT 809
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 440 GAAACTCGAGAATGAGTTCGTCTAAGAGACGATCTGGTTCTTCTCCCTCTGAATCGACTT 499
Query 810 CATCACCCGAGGCTGAGGAGAAGTTTGGTTTCAATTCTGGTTCAGACTTCACTCTTGATG 869
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 500 CATCTCCCGAGGCTGAGGAGAAATTTGGTTTCAATTCTGGTTCAGACTTCACTCTTGATG 559
Query 870 AGTTTGAGAAATATGCTCTGCATTTTAAAGACTCGTACTTTGAAAAGAAAGACTCTGGTG 929
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 560 AGTTTGAGAAATATGCTCTGCATTTTAAAGACTCTTACTTCGAAAAGAAAGACTCTGGTG 619
Query 930 GAGATATAGTAAAATGGACACCGTCTGTGGATGATATAGAAGGGGAATACTGGCGGATAG 989
||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 620 GAGATGTAGTAAAATGGACACCGTCTGTGGATGAAATAGAAGGCGAATACTGGCGGATAG 679
Query 990 TTGAGCAACCAACAGATGAAGTGGAGGTTTACTATGGAGCTGACTTGGAGAATGGGGTGC 1049
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 680 TTGAGCAACCAACAGATGAAGTGGAGGTATACTATGGAGCTGACTTGGAGAATGGGGTAC 739
Query 1050 TTGGAAGCGGGTTTTATAAAAGAGCCGAGAAGTTTACCGGTAGCGATATGGAGCAGTACA 1109
||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 740 TTGGAAGCGGGTTTTATAAAAGAGCGGAAAAGTTAACCGGTAGCGATATGGATCAGTACA 799
Query 1110 CATTATCTGGCTGGAACTTGAATAACTTACCACGGCTTCCTGGCTCTGTACTCTCTTTTG 1169
|| ||||||||||||||||||||||| | || || || || |||||||| ||||||||||
Sbjct 800 CAGTATCTGGCTGGAACTTGAATAACCTGCCGCGTCTCCCCGGCTCTGTCCTCTCTTTTG 859
Query 1170 AAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCAT 1229
|||||||||| || || |||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct 860 AAGATTGTGATATCTCTGGAGTTCTAGTTCCTTGGCTCTATGTAGGAATGTGCTTTTCAT 919
Query 1230 CATTTTGTTGGCATGTGGAGGACCATCATTTATATTCACTTAACTATCATCACTTTGGGG 1289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 920 CATTTTGTTGGCATGTGGAGGACCATCATTTATATTCACTGAACTATCATCACTTTGGGG 979
Query 1290 AGCCAAAAGTATGGTATGGTGTTCCAGGAAGCAATGCAACCGCTCTCGAGAAGGCGATGA 1349
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 980 AGCCAAAAGTATGGTATGGTGTTCCAGGAAGCAATGCAACCGCTCTTGAGAAGGCGATGA 1039
Query 1350 GGAAACATTTACCTGACTTGTTCGAAGAACAGCCTGATCTACTACATGGCCTGGTTACTC 1409
| |||||| | |||||| |||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 1040 GAAAACATCTGCCTGACCTGTTTGAAGAACAGCCTGATTTACTTCATGGCCTGGTTACTC 1099
Query 1410 AGTTTTCTCCTTCAATACTGAAAGATGAGGGAGTCCAGGCTTACCGGGTCGTGCAGAATT 1469
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1100 AGTTTTCTCCTTCAATCCTGAAAGATGAGGGAGTCCAGGCTTACCGGGTGGTTCAGAATT 1159
Query 1470 CAGGGGAGTATGTATTGACATTCCCGAGGGCGTATCATGCTGGATTCAACTGCGGTTTCA 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 CAGGGGAGTATGTATTGACATTCCCGAGGGCGTATCATGCTGGATTCAACTGCGGTTTCA 1219
Query 1530 ACTGCGCAGAAGCGGTTAATGTGGCTCCGGTTGATTGGTTGGCTCATGGACAGAACGCTG 1589
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1220 ACTGCGCAGAAGCGGTTAATGTGGCTCCTGTTGATTGGTTGACTCATGGACAGAACGCTG 1279
Query 1590 TGGAACTATATAGTAAAGAGACAAGGAAGACTTCTCTGTCTCACGACAAGCTTCTTCTTG 1649
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1280 TGGAACTTTACAGTAAAGAGACAAGGAAGACTTCTCTGTCTCACGACAAACTTCTTCTTG 1339
Query 1650 GAGCAGCTTATGAAGCGGTGAAGGCTCTTTGGGAACTCTCAGCTTCTGAGGGAAAGGAAA 1709
|||||||||||||||| || ||| | |||||||||||||||||||||| |||||||||||
Sbjct 1340 GAGCAGCTTATGAAGCTGTTAAGTCCCTTTGGGAACTCTCAGCTTCTGTGGGAAAGGAAA 1399
Query 1710 ATACAACAAATTTGAGATGGAAGAGTTTCTGTGGGAAGAACGGGACACTTACCAACGCGA 1769
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1400 ATACAACAAATTTGAGATGGAAAAGTTTCTGTGGGAAGAACGGGACACTTACCAACGCGA 1459
Query 1770 TACAAGCTCGGTTACAAATGGAAGAGGGGAGAATTACAGCTCTTGGTAGGGATTCTTCAA 1829
| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1460 TCCAGGCTCGGTTACAAATGGAAGAGGGAAGAATTGCAGCTCTTGGTAGGGATTCTTCAA 1519
Query 1830 GCTTGAA-GAAGATGGAGAAGGACTTTGATTCAAACTGTGAAAGGGAATGTTTCTCATGC 1888
| | || ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1520 TCCT-AATGAAGATGGAGAAGGAGTTTGATTCAAACTGTGAAAGGGAATGCTTCTCATGC 1578
Query 1889 TTTTATGATTTGCATCTCTCGGCTTCTGGCTGCAAGTGCTCTCCCGAAGAATACGCGTGC 1948
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1579 TTTTATGATTTGCATCTCTCGGCTTCTGGCTGCAAGTGCTCTCCTGACGAATACGCGTGC 1638
Query 1949 CTTAAACATGCAGATGATCTTTGTTCATGTGATGTGAAAGATGGATTTATTCT-TCTCCG 2007
||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 1639 CTTAAGCATGCAGATGATCTTTGTTCATGTGATGAGAAAGATGGATTTATT-TGTCTCCG 1697
Query 2008 GTACACAATGGATGAGTTAAGCTCGTTGGTCAGAGCATTGGAAGGGGAATCAGATGATTT 2067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 GTACACAATGGATGAGTTAAGCTCGTTGGTCAGAGCATTGGAAGGGGAATCAGATGATTT 1757
Query 2068 AAAGATATGGGCTTCCAAGGTTTTAGGCATTGAACATAGTGATGAAGATCAGACAAAGAC 2127
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1758 AAAGATATGGGCTTCCCAGGTCTTAGGCATTGAACACAGTGATGAAGATCAGACAAAGAC 1817
Query 2128 TAGTTCAGTTATCAGTGAGGAGAAGAAGTTAAAGGAAGGTTC 2169
||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1818 TAGTTCAGTTATCAGTGAGGAGAAGAAGTTAAAAGAAGGTTC 1859
Score = 1085 bits (587), Expect = 0.0
Identities = 631/653 (97%), Gaps = 0/653 (0%)
Strand=Plus/Plus
Query 2130 GTTCAGTTATCAGTGAGGAGAAGAAGTTAAAGGAAGGTTCTTTTGATCTGAACATTGACT 2189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 GTTCAGTTATCAGTGAGGAGAAGAAGTTAAAGGAAGGTTCTTTTGATCTGAACATTGACT 1951
Query 2190 TAGAGATGGATTATCAAGAAGACGTTAAAGAAGAAGCCAGCACTAGTGGCGGCGAGTTAA 2249
||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 1952 TAGAGTTGGATTATCAAGAAGGCCTTAAAGAAGAAGTCAGCACTAGTGGCGGCGAGTTAA 2011
Query 2250 CCGCCTCAGAGAACCTTGGTGTATCGGTCGAGCCTATAAACCTCGGGTTCTTGATTTTTG 2309
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2012 CCGCCTCAGAGAACCTTGGTGTATCGGTTGAGCCTATAAACCTCGGGTTCTTGATTTTTG 2071
Query 2310 GAAAGCTTTGGTGCAATAAGTATGCTATATTCCCAAAAGGATTCAGGAGTCGTGTCAAGT 2369
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2072 GAAAGCTTTGGTGCAATAAGCATGCTATATTCCCAAAAGGATTCAGGAGTCGTGTCAAGT 2131
Query 2370 TCTACAATGTTCTTGATCCAACAAGAATGAGCAATTACATCTCTGAGGTTTTGGATGCAG 2429
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2132 TCTACAATGTGCTTGATCCAACAAGAATGAGCAATTACATCTCCGAGGTTTTGGATGCAG 2191
Query 2430 GACTCATGGGTCCATTGTTCAGGGTTACTCTGGAAGAATCTCCAGACGAGAGCTTCTTCA 2489
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2192 GACTCATGGGTCCATTGTTCAGGGTCACTCTGGAAGAATCTCCAGACGAGAGCTTCTTCA 2251
Query 2490 ATGTCTCTGCACAACAATGCTGGGAAATGGTGATGCGGAGAGTTAAAGATACATCAACAA 2549
||||||| || ||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 2252 ATGTCTCAGCCCAACAATGCTGGGAAATGGTGTTGCAGAGAGTTAAAGATACATCCACAA 2311
Query 2550 GTCTTGGTCTTCCTATTTTACCACAGTTTGAGAGTATCAACGGGCTTCAAATGTTTGGTT 2609
||||||||||||||| ||| | ||||||||| |||||||||| ||||||||||||||||
Sbjct 2312 GTCTTGGTCTTCCTACATTATCGCAGTTTGAGGGTATCAACGGTCTTCAAATGTTTGGTT 2371
Query 2610 TCCTCTCACCCTCTATAGTTCAGGCCATTGAAGCTCTTGACCCAAACCATCGACTAGTTG 2669
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2372 TCCTCTCGCCGTCTATAGTTCAGGCCATTGAAGCTCTTGACCCAAACCATCGACTAGTTG 2431
Query 2670 AGTACTGGAACCACAAGAACCAAACTTCATCAGACTCAAAAGATCACTTCATATCATCAA 2729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2432 AGTACTGGAACCACAAGAACCAAACTTCATCAGACTCAAAAGATCACTTCATATCATCAA 2491
Query 2730 ACTGTTCCGCAAGTTTAACCAAAGGAAAACTTTTCGGAGTAGATTTGATGTAA 2782
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2492 ACTGTTCCGCAAGTTTAACCAAAGGAAAACTTTTCGGAGTAGATTTGATGTAA 2544
> Ahg473311 jgi|Araly1|473311|fgenesh2_kg.1__3265__AT1G30800.1
Length=1011
Score = 1077 bits (583), Expect = 0.0
Identities = 724/791 (92%), Gaps = 14/791 (2%)
Strand=Plus/Minus
Query 3207 TCAGAACAGAGCCAGAGTCGCCAATGGAAGCAAGAACGAGCCAGTTGAGAAATGTACT-G 3265
|||||||| || ||||| ||||||||||||||||||||||||||||||| |||||| | |
Sbjct 778 TCAGAACAAAGTCAGAGCCGCCAATGGAAGCAAGAACGAGCCAGTTGAGTAATGTA-TAG 720
Query 3266 TGGATGCAGAAGCAGAGGTTTGATTGGTGTCACTGTTGGATCCATCGGGATGACGACGGC 3325
||||||||||| |||||||||||||| ||||||||||||||||| | | || |||| |
Sbjct 719 TGGATGCAGAAACAGAGGTTTGATTGTTGTCACTGTTGGATCCA-C--CACGAGGACGAC 663
Query 3326 GACTAGAAGGCTGAAAAGGCCAAGGACGGAGACTATCAGCTAAAGTAGTATCACCGGTAC 3385
||| || ||| || ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 662 GAC--GACGGC-GATGAGGATATGGACGGAGACTATCAGCTAAAGTAGTATCACCGGTAC 606
Query 3386 CAAAATCGCCGTAACGTGAGAAATCAAGAGACGAAGCAACGCCGTGAATAGCAATTGAAG 3445
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 605 CAAAATCGCCGTAACGTGAGAAATCAAGCGACGAAGCAACACCGTGAATAGCGATCGAAG 546
Query 3446 AAGAGAGGAAAAGATCCGGTTCAGAGACAAGAACGCCGTCGAGTGCGTAACCGGGAACAG 3505
||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 545 AAGAGAGGAAAAGATCCGGTTCAGAGACAAGAACGCCGTCGAGAGTATAACCGGAAACAG 486
Query 3506 AGTTGTTAGTGACGACGATTGTGTTTCCGGGGAGAAGAGTCGGAAGACGAGAGAGTGGTT 3565
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 485 AGTTGTTAGTGACGACGATTGAGTTTCCCGGGAGAAGAGTCGGAAGACGAGAGAGTGGTT 426
Query 3566 TGAAGAGACGAAGATCTGTGAAGGAGAGTCGTTGAGGTACGATGTGGTAAGCGACGGAGA 3625
| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 425 TCAAGAGACGGAGATCAGTGAACGAGAGTCGTTGAGGTACGATGTGGTAAGCGACGGAGA 366
Query 3626 GACGACGGGGATTAGCGTTGTTGTTGCCAGTGGTGGAGGAAGAGGAGGAGGAGATATCAG 3685
|||||||||||| ||| || |||| ||| ||||| | ||||||||||||| ||| |
Sbjct 365 GACGACGGGGATAAGCATTATTGTCGCC---GGTGG-TG--GAGGAGGAGGAGACATCGG 312
Query 3686 CGGAGTCGAAATCGCTTGGGATGAAGATAGTGGCGGAGAGAGGGATACCGAATTGGTCAT 3745
||||||||||||||||||||| ||| || ||||||||||||||||| || || |||||||
Sbjct 311 CGGAGTCGAAATCGCTTGGGACGAAAATGGTGGCGGAGAGAGGGATTCCTAACTGGTCAT 252
Query 3746 CGACGGCGGAGAGAAAATCTGCGGCCCAGTCACGGAAATCTCCGGCTCCGATCATTGCTT 3805
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CGACGGCGGAGAGGAAATCAGCGGCCCAGTCACGGAAATCTCCGGCTCCGATCATTGCTT 192
Query 3806 CGATGATTCTGTCGGCGTGTTGGTGATCTTGGGACGTGAGATACGCTGGAGAAGCGGCGG 3865
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 191 CGATGATTCTGTCGGCGTGTTGGTGATCTTGCGACGTGAGATACGCTGGAGAAGCGGCGG 132
Query 3866 AAGTGAGGAATGTGACGGTGGTGATGAGGAAGAGGAGAAAGAGATGGCTTGAGGTGGCCA 3925
|||| |||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||
Sbjct 131 AAGTTAGGAATGTGACGGTGGTGATGAGGAAGAAGAGAAGGAGATGGCCTGAGGTAGCCA 72
Query 3926 TCGGAGATTCAAATCGGCGGCGAAGTTGTAACAGAATGAGAGAGAATCTTTTTGAGTTCG 3985
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 71 TCGGAGAATCAAATCGGCGGCGAAGTTGTAACAGAAAGAGAGAGAATCTTTTTGAGTTCG 12
Query 3986 TTAGGATTCTT 3996
|||||||||||
Sbjct 11 TTAGGATTCTT 1
Score = 309 bits (167), Expect = 1e-82
Identities = 223/247 (90%), Gaps = 15/247 (6%)
Strand=Plus/Minus
Query 2852 AGATAGAGAGAAGAAATTTCTTTCTGAttttttttttttGTTTTGGGGGCATTTATTATT 2911
||||||| |||| |||||||||||||| || ||||| |||| || ||| | |||||
Sbjct 1011 AGATAGATAGAATAAATTTCTTTCTGA----TTCTTTTT-TTTT-GGAGCA--T-TTATT 961
Query 2912 CATAATCTTTTGTTCTTATTTATCA-TAGCAAGAACAAATAACCTAACCTTAGCGTTAGT 2970
||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 960 CATAATCTTTTGTTCTT-TTTATCACT-GCAAGAACAAATAACCTAACCTTAGCGTTAGT 903
Query 2971 GAAGTGTAAACTAGAAAAGAAAAGTCATAATAATAGAAATTCTTCTTTCAAAAATCAAGA 3030
||||||||||| |||||||||||||| ||||||||| |||||||||||| |||||||||
Sbjct 902 GAAGTGTAAACAAGAAAAGAAAAGTCGTAATAATAGTAATTCTTCTTTC--AAATCAAGA 845
Query 3031 AAATTTGCTATTGCTTAATGTGAAAAACTTTACATTATGTAACAGAGTTTCACaaaatct 3090
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 844 AAATTTGCTATTGCTTAATGTGAAAAACTTTACATTATGTG-CAGAATTTCACAAAATCT 786
Query 3091 tgaaaaa 3097
|||||||
Sbjct 785 TGAAAAA 779
> Ahg949915 jgi|Araly1|949915|scaffold_801802.1
Length=256
Score = 213 bits (115), Expect = 9e-54
Identities = 149/165 (90%), Gaps = 4/165 (2%)
Strand=Plus/Plus
Query 1496 AGGGCGTATCATGCTGGATTCAACTGCGGTTTCAACT-GCGCAGAAGCGGTTAATGTGGC 1554
||||||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 69 AGGGCGTATCAGGCTGGATTCAACTGCGGTTTCAA-TCGCGCTGAAGCGGTTAATGTGGC 127
Query 1555 TCCGGTTGATTGGTTGGCTCATGGACAGAACGCT-GTGGAACTATATAGTAAAGAGACAA 1613
||||||| || ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct 128 TCCGGTTTATCGGTTGGCTCATGGACAGAATG-TCGTAGAACTATATAGTAAAGAGACAA 186
Query 1614 GGAAGACTTCTCTGTCTCACGACAAGCTTCTTCTTGGAGCAGCTT 1658
|||||| |||||||||||| ||||| ||||| || |||||| |||
Sbjct 187 GGAAGATTTCTCTGTCTCATGACAAACTTCTCCTCGGAGCATCTT 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157139718917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5