BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30814.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922159 jgi|Araly1|922159|scaffold_103440.1 680 0.0
> Ahg922159 jgi|Araly1|922159|scaffold_103440.1
Length=907
Score = 680 bits (368), Expect = 0.0
Identities = 586/686 (85%), Gaps = 35/686 (5%)
Strand=Plus/Plus
Query 410 AGAGCTATGAAAGACCATGA-AAGAGCTATACTGGAAGAAAGAATTAACTAT-TACCTAG 467
||||||||| |||||||| | || ||||||||||||||| ||| | || ||| | ||||
Sbjct 16 AGAGCTATGCAAGACCATTACAA-AGCTATACTGGAAGAGAGACTAAATTATCT-CCTAA 73
Query 468 CGAAACGTACCGAAAGAATTGTTTTTGCTGAGCTTGATACTGGAGGAAAAATAATCGAAT 527
| ||| | ||| | ||| || ||||||||||||||| ||||| |||| ||||||||
Sbjct 74 CAAAAAGAACC----G-TTTG-TTATGCTGAGCTTGATACAGGAGGCAAAAGAATCGAAT 127
Query 528 GTCCAAATTGTCACGTTCAATTTACTCCTACTCTCGGAAACTGGATCGCGGATAAGTTTG 587
|||||||||||||||||||| ||| ||||||||| ||||| ||||| |||||||||||
Sbjct 128 GTCCAAATTGTCACGTTCAAATTATTCCTACTCTTGGAAATTGGATTTCGGATAAGTTTC 187
Query 588 CATGTAAAAGCTGCAAAGCTAACTTATCTTTTAGAAACAGCACAGCAAAAACAGCGAGAT 647
||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 188 CATGTAAAAGCTGCAAAGCTAACTTATCTTTTAAAAACAGCACAGCAAAAACCGCAAGAT 247
Query 648 GTCCTTGTTGTACTATCTCACGTCCTGTGCCAAACAATTTTACAATGCTTGTGTGTGGCG 707
|||||||| ||| ||| ||||||||||||||||||||| ||| |||||||| |||||| |
Sbjct 248 GTCCTTGTCGTAATATTTCACGTCCTGTGCCAAACAATCTTATAATGCTTGAGTGTGGTG 307
Query 708 GATGTCCAGTGAGCGTCGTTCATCAAAAACGTGATAAAACTGTGAAATGTTCTGAGTGCA 767
|||||| || ||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 308 GATGTCAAGCGAGAGTGGTTCATCAAAAAAGTGATAAAACTGTGAAATGTTCTGAGTGCA 367
Query 768 AACATATCAATATTCCAACTTTTGGAAGAACTTATGGGGTTCGTCCAGAGAACCAAGCTC 827
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 368 AACATATCAATATTCCAACTGTTGGAAGAACTTATGGGGTTCGTCCAGAGAACCAAGCTC 427
Query 828 GTCCTCCGCAAGTTTACCGGATTGTTCCTCCTCAAGGTAACGGGGTAGCTCCTCCTCAAG 887
| |||||||||||||| ||||||||||||||||| |||| | | || || | |
Sbjct 428 --C-TCCGCAAGTTTACCAGATTGTTCCTCCTCAAGTTAACCAAG-ATCTTAACC--AGG 481
Query 888 ATAA-CC--AAGATGGTCCGCGAAG-TTACCAAGTTGTTCCTATTCCTCAAGTTAACAAG 943
| || ||| | || ||| ||||| |||||||||||||||||||||||||||
Sbjct 482 TTCCTCCTCAAGTTAA-CC---AAGGTTACCGGGTTGTTCCTATTCCTCAAGTTAACAAG 537
Query 944 GATCTTCCTCAAACTTACCACCTTGTTCCTTGT--C-GTAACGGAGTT----C-C-TCAA 994
|||||||||||||||||| | |||||||||||| | ||||||| ||| | | ||||
Sbjct 538 GATCTTCCTCAAACTTACAAGCTTGTTCCTTGTAACCGTAACGGGGTTGTTTCTCCTCAA 597
Query 995 GTTAACCAAGATCCTTCGACAT-TTTACCAAGTTGTTCCTCGTCAAGTTAACGAGGTTCC 1053
|||||||||||||||||| || ||||||| |||||||||||||||| |||| |||||||
Sbjct 598 GTTAACCAAGATCCTTCG-CAACTTTACCAGGTTGTTCCTCGTCAAGATAACCAGGTTCC 656
Query 1054 TCCGCAAGTTAACCGAGTTGTTCCTC 1079
||||||||||||||| ||| ||||||
Sbjct 657 TCCGCAAGTTAACCGGGTTATTCCTC 682
Score = 383 bits (207), Expect = 2e-105
Identities = 287/323 (89%), Gaps = 15/323 (5%)
Strand=Plus/Plus
Query 1025 GTTGTTCCTCGTCAAGTTAACGAGGTTCCTCCGCAAGTTAACCGA-GTTGTTCCTCGTCC 1083
|||||| ||| |||||||||| | | |||| ||||| || ||| | |||||||||||||
Sbjct 583 GTTGTTTCTCCTCAAGTTAACCAAGATCCTTCGCAACTTTACC-AGGTTGTTCCTCGTCA 641
Query 1084 AGCTAACGAGGTTCCTCCGCAAGTTAACCGGATTGTTCCTCCTCGAGTTTACCAGCGGAG 1143
|| |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 642 AGATAACCAGGTTCCTCCGCAAGTTAACCGGGTTATTCCTCCTCGAGTTTACCAGCGGAG 701
Query 1144 GAACCGTGCAGCAACTGCTGAAACTGAATCAACTGCGAGTTCTTCTTTCAATCAAA-AGC 1202
||||| || ||||||| |||||||||||||||||||||||||||||||||||| || | |
Sbjct 702 GAACCATGGAGCAACTCCTGAAACTGAATCAACTGCGAGTTCTTCTTTCAATCCAAGA-C 760
Query 1203 CTGAGATCATTGTAGTTGAATACCCTGATGATTCTGTAGCTGAAACTGTGAG-AATGGTT 1261
|||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| ||
Sbjct 761 CTGAGATCATTGTAGTTGAATACCCTGATGATACTGTTGCTGAAACTGTGAGGAATG-TT 819
Query 1262 Gcaa-caaagagagtagtagaagtagaacaagacaagacagaagaagcaggaaacaagaa 1320
|||| ||| ||||| |||||||| | | |||||||||||||||||||||| ||||||
Sbjct 820 GCAATCAA-GAGAGAAGTAGAAG-A-A----GACAAGACAGAAGAAGCAGGAAGCAAGAA 872
Query 1321 gaTTCGTCTCTAATCGATTGAAA 1343
||||||||||||||||||| |||
Sbjct 873 GATTCGTCTCTAATCGATT-AAA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5