BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30820.1
Length=2480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473316 jgi|Araly1|473316|fgenesh2_kg.1__3270__AT1G30820.1 3679 0.0
Ahg901331 jgi|Araly1|901331|Al_scaffold_0004_1981 1467 0.0
Ahg946140 jgi|Araly1|946140|scaffold_702369.1 874 0.0
Ahg908150 jgi|Araly1|908150|Al_scaffold_0002_1231 230 5e-59
Ahg908158 jgi|Araly1|908158|Al_scaffold_0002_1239 193 7e-48
> Ahg473316 jgi|Araly1|473316|fgenesh2_kg.1__3270__AT1G30820.1
Length=2460
Score = 3679 bits (1992), Expect = 0.0
Identities = 2305/2450 (94%), Gaps = 46/2450 (2%)
Strand=Plus/Plus
Query 46 TGTTTCTCTCTTCCCCTTTATAAAACCGCTTCCGTCGTCAATGGCGTGAGCCTAAACAAG 105
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 27 TGTTTCTCTCTT-CCCTTTATAAAACCGCTTCCGTCGTCAATGGCGTGAACCTAAAC--- 82
Query 106 AAAGAAAAACCAttcttctctcttttcgtttttttcattctctctctctctactccatcg 165
|| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 83 TAA-AAAAACCATTCTTCTCTCTTTTCATTTTTTTCATTCTCTCTCTCTCTTCTCCATCG 141
Query 166 ttttcacacttttctcGCCGCCCTTTATCCTTATCCG--------AT--AAACCCACAAA 215
||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 142 TTTTCACACTTCTCTCGCCGCCCTTTATCCTTATCCGATAAACCCATCAAAACCCACAAA 201
Query 216 TAAAGACAGACTCTTTTGTTCTTTAAACAGAGATTGTAAATCCAGAGCCGCCGGAAAATA 275
|||| |||||||| |||||||||||||||||||||| |||||||||| | |||||| |||
Sbjct 202 TAAAAACAGACTC-TTTGTTCTTTAAACAGAGATTGAAAATCCAGAGTCACCGGAATATA 260
Query 276 CAACCGCCGGTTTACTCTCAGG-AT-TAGTTGA---TAT--TATTCGATTTTAAAAATCA 328
|||||||||| ||||||||||| | | || | | | | ||||| || ||||| |
Sbjct 261 CAACCGCCGG-TTACTCTCAGGTCTCTCTTTCACTCTCTGGTTTTCGA--TT-AAAAT-A 315
Query 329 GTAGGAAGAAGATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAG 388
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 -T-CAAAGAAGATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAG 373
Query 389 GAGTAACAGCAAGTAGTATTGGTGTTCTCCTTAAAGCTTGTGGTCTTCGAGTTACTTCTA 448
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 374 GAGTAACAGCAAGTAGTATTGGTGTTCTTCTTAAAGCTTGTGGTCTTCGAGTTACTTCTA 433
Query 449 TCAAAATCGATCCTTATCTGAACACTGATGCTGGAACTATGTCTCCATTTGAACACGGTG 508
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 434 TCAAAATCGATCCTTATCTTAACACTGATGCTGGAACCATGTCTCCATTTGAACACGGTG 493
Query 509 AAGTTTTTGTCTTGGACGATGGTGGTGAGGTGGATCTTGATCTTGGAAACTACGAAAGGT 568
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 494 AAGTTTTTGTCTTGGACGATGGTGGTGAGGTGGATCTTGATCTTGGAAATTACGAAAGGT 553
Query 569 TTCTAGATATCAAATTAACAAGAGACAATAACATCACTACTGGGAAAATTTATCAGCATG 628
|||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 554 TTCTGGATATAAAATTAACCAGAGACAATAACATCACTACTGGGAAAATTTACCAGCATG 613
Query 629 TTATTGCTAAAGAGAGGAAAGGAGATTATTTGGGAAAGACTGTTCAGGTTGTTCCTCATG 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TTATTGCTAAAGAGAGGAAAGGAGATTATTTGGGAAAGACTGTTCAGGTTGTTCCTCATG 673
Query 689 TCACTGATGCAATTCAAGATTGGATCGAGAGAGTTGCGGTTATTCCTGTTGATGGAGAAG 748
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 674 TCACTGATGCAATTCAAGATTGGATTGAGAGAGTTGCGGTTATTCCTGTTGATGGAGAGG 733
Query 749 AGGATCCTGCTGATGTTTGCGTTATTGAATTAGGTGGAACAATAGGTGATATTGAATCCG 808
||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 734 AGGGTCCTGCTGATGTTTGTGTTATTGAATTAGGTGGAACTATAGGTGATATTGAATCCG 793
Query 809 CGCCTTTTATCGAGGCGCTTGGTCAATTCTCTTACCGTGTAGGCCCAGGGAATTTCTGTC 868
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 794 CGCCTTTTATTGAGGCGCTTGGCCAATTCTCTTACCGTGTAGGCCCAGGGAATTTCTGTC 853
Query 869 TGGTCCATGTCAGCCTCGTGCCTGTGCTTAATGTTGTTGGTGAACAGAAAACTAAGCCGA 928
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 854 TGGTCCATGTCAGCCTCGTGCCTGTGCTTAATGTTGTTGGTGAACAGAAAACTAAGCCCA 913
Query 929 CACAGCATAGTGTCAAGGGGCTACGAGGATTGGGCTTGACGCCGGATATCTTAGCTTGTA 988
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 914 CACAGCATAGTGTCAAGGGGCTACGAGGCTTGGGCTTGACGCCGGATATCTTAGCTTGCA 973
Query 989 GGAGCACAAAGCCACTTGAAGATAATGTGAAAGAAAAACTAGCTCAGTTTTGCCATGTCC 1048
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 974 GGAGCACAAAGGCACTTGAAGATAATGTGAAAGAAAAACTAGCTCAATTTTGCCATGTCC 1033
Query 1049 CGCTTGAGTATATCTTCACTCTCTATGATGTTCCCAACATTTGGCGTATTCCTTTGTTGC 1108
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1034 CGCTTGAGTATATTTTCACTCTCTATGATGTTCCCAACATTTGGCATATTCCTTTGTTGC 1093
Query 1109 TAAAGGATCAGAAAGCTCATCTGGCAATCTCAAAAGTGCTCAATCTTGCTAGTATTCTTA 1168
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1094 TAAAGGATCAGAAAGCTCATCTGGTAATCTCAAAAGTGCTCAATCTTGCTAGTATTCTTA 1153
Query 1169 ATGAGCCTTCTCTAGGGGAATGGACTTCCAGAGCTGAATTATGTGACAATTTACATGTGC 1228
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1154 ATGAGCCTTCTCTTGGGGAATGGACTTCCAGAGCTGAACTATGTGACAATTTACATGTGC 1213
Query 1229 CGGTGAGAATCGCTGTTGTGGGGAAATATACAGGCCTCTCTGATGCTTATCTCTCTGTCT 1288
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 CGGTGAGAATTGCTGTTGTGGGGAAATATACAGGCCTCTCTGATGCTTATCTCTCTGTCT 1273
Query 1289 TAAAGGCTCTCTTACATGCTTCTGTGGCTTGTCGCAAAAAGCTCGTAGTTGATTGGGTTC 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TAAAGGCTCTCTTACATGCTTCTGTGGCTTGTCGCAAAAAGCTCGTAGTTGATTGGGTTC 1333
Query 1349 CAGCTTGTGATCTCGAAAAAGAAACTGAGAAAGAGAATCCAGATGCGTATAAAGCTGCTT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 CAGCTTGTGATCTCGAAAAAGAAACTGAGAAAGAGAATCCAGATGCGTATAAAGCTGCTT 1393
Query 1409 GGAAGTTGCTAAAGGGTGTAGATGGAATTCTTGTACCTGGAGGTTTTGGTGATAGAGGAG 1468
|||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 1394 GGAAGTTGCTAAAGGGGGTAGATGGAGTTCTTGTCCCTGGAGGTTTTGGTGATAGGGGAG 1453
Query 1469 TGGAAGGGAAGATTCTTGCTGCAAAGTATGCACGTGAAAACAAAATCCCGTTCCTCGGTA 1528
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1454 TGGAAGGGAAGATTCTTGCTGCAAAATATGCCCGTGAAAACAAAATCCCTTTCCTCGGTA 1513
Query 1529 TTTGTCTTGGAATGCAGATTGCTGTCATCGAGTTTGCACGATCAGTTCTAAGCTTGCAAG 1588
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1514 TTTGTCTCGGGATGCAGATTGCTGTCATCGAGTTTGCACGATCAGTTCTCTGCTTGCACG 1573
Query 1589 ACGCAAACAGCACAGAATTTAACCCTGAAACCAAACATCCTTGCATCATTTTCATGCCCG 1648
|||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||
Sbjct 1574 ACGCAAACAGCACAGAATTTAAACCTGAAACGAAACATCCGTGTATCATTTTCATGCCCG 1633
Query 1649 AGGGTTCTAAAACTCATATGGGAGGCACTATGCGCTTAGGATCAAGAAAATCCATCTTCA 1708
||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1634 AGGGTTCGAGAACTCATATGGGAGGCACTATGCGCTTAGGATCAAGAAAATCCTTCTTTA 1693
Query 1709 ATGTCAAAGACAGCAAATCTGCAAAACTATACGAGAACAAAAGCTTTGTAGATGAGAGGC 1768
||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||
Sbjct 1694 ATGTCAAAGACAGCAAATCCGCAAAACTATACGGGAACAAAAACTTTGTCGATGAGAGGC 1753
Query 1769 ATCGTCACAGATACGAGGTGAATCCGGACATGGTTGAACGCCTTGAGAAGGCCGGTCTTT 1828
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1754 ATCGTCACAGATATGAGGTGAATCCTGATATGGTTGAACGCCTTGAGAAGGCCGGTCTTT 1813
Query 1829 CTTTCGCTGCGAAAGATGAAACTGGCAAACGCATGGAGATCATTGAACTTCCAAACCATC 1888
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1814 CTTTCGCTGCGAAAGATGAAACTGGCAAACGCATGGAGATCATTGAACTACCAAACCATC 1873
Query 1889 CTTTCTTTATCGGTGCTCAATTCCACCCCGAGTTCAAATCCAGACCCGGGAAAGCTTCTC 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1874 CTTTCTTTATCGGTGCTCAATTCCACCCCGAGTTCAAATCCAGACCCGGGAAAGCGTCTC 1933
Query 1949 CTCTGTTTTTAGGGCTCATTGCAGCATCGTGTGGCGAGTTAGACACAGTCCTGAATCCAG 2008
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1934 CTCTGTTTTTAGGACTCATTGCAGCATCGTGTGGCGAGCTAGACACAGTCCTGAATCCAG 1993
Query 2009 CTTCTGCTCATCAACAT-TCGATTAGTAACGGTCCAACAAACATTTTCATCAATGGAACT 2067
| ||||||||||||||| | |||||| |||||||||| |||| ||| | |||||||||||
Sbjct 1994 CATCTGCTCATCAACATCT-GATTAGCAACGGTCCAAAAAACGTTTACGTCAATGGAACT 2052
Query 2068 TCCAAGAAATCTCCCAATGGCTTGGCTGATGTAAGATATAATAACGGCTACTGCAATGGC 2127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 CCCAAGAAATCTCCCAATGGCTTGGCTGATGTAAGATATAATAACGGCTACTGCAATGGC 2112
Query 2128 CTCTACACTAGATAGCTGCATTTGCTGAATTCTCCCTCT--CCAT-T-----AGAATTAT 2179
|||||||||||||||||||||||||||| |||||||||| || | | | ||||||
Sbjct 2113 CTCTACACTAGATAGCTGCATTTGCTGATTTCTCCCTCTTTCCCTCTCCTTTAAAATTAT 2172
Query 2180 TGCTTTGTGTTCGATTTAGTTTGGATTTTGGTTTGCTTTCTTCTTAATAATCTTAGGATT 2239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2173 TGCTTTGTTTTCGATTTAGTTTGGATTTTGGTTTGCTTTCTTCTTAATAATCTTAGGATT 2232
Query 2240 TTTCCTCTGTACATATGATCCAAGCTTTTGCTCAGttttttttAGACTCTTTTAACAGAC 2299
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2233 TTTCCTCTGTACATATGATCCAAGCTTTTGTTCAGTTTTTTT-AGACTCTTTTAACAGAC 2291
Query 2300 TTATGATCTGGAAAGACTCTAGAAACGTTTGAAAATGGCGGTTTGATTCCCCTGGTTCGt 2359
||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 2292 TTATGTTCTGAAAAGACTCTAGAAACGTCTGAAAATGGCGGTTTGATTCCCCTGCTTTGT 2351
Query 2360 tttttttttCCACCAAAAGGGATTTCATATGATCTTATGTACCGTTGGAACATTTTACAT 2419
|||||||| | | ||||||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 2352 TTTTTTTTAC-ATCAAAAGGGATTTCATATGATCATATGTACCGGTGGAACATTTTGTAT 2410
Query 2420 CTCTCGATTTGGTCTGAATGTGTAA-GAAGCATTTGATAAATAAAACTTT 2468
||| ||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 2411 CTC--GATTTGGTCTGAAGGTG-AACGAAGCATTTGATAAATAAAACTTT 2457
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 9 GAGAGAGGCGCTTCTCTGCTGCAAATTG 36
||||||||||||||||||||||||||||
Sbjct 1 GAGAGAGGCGCTTCTCTGCTGCAAATTG 28
> Ahg901331 jgi|Araly1|901331|Al_scaffold_0004_1981
Length=1782
Score = 1467 bits (794), Expect = 0.0
Identities = 1403/1696 (83%), Gaps = 46/1696 (3%)
Strand=Plus/Plus
Query 340 ATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAGTAACAGCA 399
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1 ATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGAATCACTGCA 60
Query 400 AGTAGTATTGGTGTTCTCCTTAAAGCTTGTGGTCTTCGAGTTACTTCTATCAAAATCGAT 459
|| ||| ||||||| || ||| || ||||||||||||| ||||||| ||||||||| |||
Sbjct 61 AGCAGTGTTGGTGTCCTTCTTCAATCTTGTGGTCTTCGCGTTACTTGTATCAAAATTGAT 120
Query 460 CCTTATCTGAAC-ACTGATGCTGGAACTATGTCTCCATTT-GAACACGGTGAAGTTTTTG 517
||||||||||| || ||||||||||| || ||||| || ||||| |||||||| ||||
Sbjct 121 CCTTATCTGAATTAC-GATGCTGGAACCATATCTCC-TTACGAACATGGTGAAGTGTTTG 178
Query 518 TCTTGGACGATGGTGGTGAGGTGGATCTTGATCTTGGAAACTACGAAAGGTTTCTAGATA 577
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 179 TCTTGGACGATGGTAGTGAGGTGGATCTTGATCTTGGAAACTACGAGAGGTTTCTAGATG 238
Query 578 TCAAATTAACAAGAGACAATAACATCACT-ACTGGGAAAATTTATCAGCATGTTATTGCT 636
||| |||||| |||| || || |||||| || ||||| ||| | ||| |||| || |
Sbjct 239 TCACATTAACTCGAGATAACAATATCACTTAC-GGGAAGATTCAGCAGTATGTGATCGAG 297
Query 637 AAAGAGAGGAAAGGAGATTATTT-GGGAAAGACTGTTCAGGTTGTTCCTCATGTCACTGA 695
|||||||||||||||||||| || ||| || ||||||||| |||||||||| ||||||||
Sbjct 298 AAAGAGAGGAAAGGAGATTACTTAGGGGAA-ACTGTTCAGATTGTTCCTCACGTCACTGA 356
Query 696 TGCAATTCAAGATTGGATCGAGAGAGTTGCGGTTATTCCTGTTGATGGAGAAGA-GGATC 754
| |||| | ||| ||| | |||| |||||| | |||||||| |||||| |||| || ||
Sbjct 357 TACAATCCGAGAATGGGTGGAGAAAGTTGCAATGATTCCTGTAGATGGAAAAGAAGG-TC 415
Query 755 CTGCTGATGTTTGCGTTATTGAATTAGGTGGAACAATAGGTGATATTGAATCC-GCGCCT 813
|| ||||||||||| | ||||||||||||||||| ||||| |||| ||||||| | ||||
Sbjct 416 CTCCTGATGTTTGCATCATTGAATTAGGTGGAACTATAGGAGATAATGAATCCAG-GCCT 474
Query 814 TTTA-TCGAGGCGCTTGGTCAATTCTCTTACCGTGTAGGCCCAGGGAATTTCTGTCTGGT 872
||| | || || ||| | ||||| || ||| ||||||||| | ||||||||||||| |
Sbjct 475 TTTGCT-GACGCACTTAGCCAATTATCATACAGTGTAGGCCGTGAGAATTTCTGTCTGAT 533
Query 873 CCATGTCAGC-CTCGTGCCTGTGCTTAATGTTGTTGGTGAACAGAAAACTAAGCCGACAC 931
|||||||| | |||||||| ||||| | ||||||||||||||||||||| || || ||||
Sbjct 534 CCATGTCA-CACTCGTGCCAGTGCTCAGTGTTGTTGGTGAACAGAAAACAAAACCAACAC 592
Query 932 AGCATAGTGTCA-AGGGGCTACGAGGATTGGGCTTGACGCCGGATATCTTAGCTTGTAGG 990
|||| || | | || |||||||| ||||| ||||| || ||||| |||||||| ||
Sbjct 593 AGCACAGCATTAGAGAT-CTACGAGGCTTGGGTTTGACACCTAATATCATAGCTTGTCGG 651
Query 991 AGCACAAAGCCACTTGAAGATAATGTGAAAGAAAAACTAGCTCAGTTTTGCCATGTCCCG 1050
|||||| || ||||||||| ||||| |||| ||| ||| ||| ||||||| |||| |||
Sbjct 652 AGCACAGAGGTACTTGAAGAGAATGTAAAAGCAAAGCTATCTCGGTTTTGCTATGTTCCG 711
Query 1051 CTTGAGTATATCTTCACTCTCTATGATGTTCCCAACATTTGGCGTATTCCTTTGTTGCTA 1110
|| || | |||||| ||||||||||||||| || ||| |||| ||||||||||||||
Sbjct 712 ATTCAGAACATCTTCTCTCTCTATGATGTTCACAGCATCTGGCACATTCCTTTGTTGCTC 771
Query 1111 AAGGATCAGAAAGCTCATCTGGCAATCTCAAAAGTGCTCAATCTTGCTAGTATT-CTTAA 1169
| ||| ||||| |||||| ||||| |||||||| || || ||| || ||||| || ||
Sbjct 772 AGGGAACAGAAGGCTCATGAAGCAATATCAAAAGTCCTGAACCTTTCTGGTATTGCTAAA 831
Query 1170 TGAGCCTTCTCTAGGGGAATGGACTTCCA-GAGCT-GAA-TTATGTGACAATTTACATGT 1226
|| |||||| ||| | ||||| |||| | | | | ||| ||| |||||| |||| ||||
Sbjct 832 -GAACCTTCTTTAGAGAAATGGGCTTCAATG-G-TAGAAATTA-GTGACAGTTTAAATGT 887
Query 1227 GCCGGTGAGAATCGCTGTTGTGGGGAAATATACAGGCCTCTCTGATGCTTATCTCTCTGT 1286
||||||||||||||| | ||||| |||||||||| ||||| ||||| ||||| |||||
Sbjct 888 ACCGGTGAGAATCGCTATCGTGGGAAAATATACAGATCTCTCAGATGCCTATCTTTCTGT 947
Query 1287 CTTAAAGGCTCTCTTACATGCTTCTGTGGCTTGTCGCAAAAAGCTCGTAGTTGAT-TGGG 1345
||| ||||||||| | |||||||| ||||||| | | |||||||| ||||||||| |||
Sbjct 948 CTTGAAGGCTCTCCTCCATGCTTCCGTGGCTTTTGGAAAAAAGCTTGTAGTTGATATGG- 1006
Query 1346 TTCCAGCTTGTGATCTCGAAAAAGAA-ACTGAGAAAGAGAATCCAGATGCGTATAA-AG- 1402
||||| |||||||||||||||| || || ||||||||||| || ||| ||| ||
Sbjct 1007 TTCCATCTTGTGATCTCGAAAA-GACCACCAAGAAAGAGAATTCAC--GCGCATACGAGG 1063
Query 1403 CTGCTTGGAAGTTGCTAAAGGGTGTAGATGGAATTCTTGTACCTGGAGGTTTTGGTGATA 1462
||||||||||||| || |||| | ||||||| ||||| | |||||||| ||||||||||
Sbjct 1064 CTGCTTGGAAGTTACTCAAGGACGCAGATGGAGTTCTTCTCCCTGGAGGGTTTGGTGATA 1123
Query 1463 GAGGAGTGGAAGGGAAGATTCTTGCTGCAAAGTATGCACGTGAAAACAAAATCCCGTTCC 1522
| ||| | || |||| ||||||||| ||||| ||||| || ||||||| ||||| ||||
Sbjct 1124 GGGGAATAGAGGGGATGATTCTTGCAGCAAAATATGCCCGAGAAAACAGTATCCCTTTCC 1183
Query 1523 TCGGTATTTGTCTTGGAATGCAGATTGCTGTCATCGAGTTTGCACGATCAGTTCTA-AGC 1581
||||||| ||||| || |||||||| ||||| ||||||||| |||| ||| |||| | |
Sbjct 1184 TCGGTATCTGTCTCGGGATGCAGATCGCTGTTATCGAGTTTTCACGCTCACTTCTCTA-C 1242
Query 1582 TTGCAAGACGCAAACAGCACAGAATTT-AACCCTGAAACCAAACATCCTTGCATCATTTT 1640
|||| || ||||| |||||||| ||| |||| |||||||||| |||| |||||||| ||
Sbjct 1243 TTGCCTGATGCAAATAGCACAGAGTTTGAACC-TGAAACCAAAAATCCATGCATCATATT 1301
Query 1641 CATGCCCGAGGGTTCTAAAACTCATATGGGAGGCACTATGCGCTTAGGATCAAGAAAATC 1700
|||||| ||||| || | |||||||||||||||||| ||| | ||||| || |||| | |
Sbjct 1302 CATGCCTGAGGGCTCCACAACTCATATGGGAGGCACAATGAGATTAGGCTCGAGAAGAGC 1361
Query 1701 C-ATCTTCAATGTCAAAGACAGCAAATCTGCAAAACTATACGAGAACAAA-AGCTTTGTA 1758
| || ||| |||||||||||||||||||||||| |||||| | ||||||| || |||||
Sbjct 1362 CTAT-TTCCATGTCAAAGACAGCAAATCTGCAAGACTATATGGGAACAAAGAG-TTTGTC 1419
Query 1759 GATGAGAGGCATCGTCACAGATACGAGGTGAATCCGGACATGGTTGAACGCCTTGAGAAG 1818
||||| |||||||| || ||||| ||||||||||| || ||||||| | |||| ||||||
Sbjct 1420 GATGAAAGGCATCGCCATAGATATGAGGTGAATCCTGATATGGTTGCATGCCTCGAGAAG 1479
Query 1819 GCCGGTCTTTCTTTCGCTGCGAAAGATGAAACTGGCAAACGCATGGAGATCATTGAACTT 1878
|| ||||| ||||| ||||| ||||||||||||||| | || | |||||| ||||| ||
Sbjct 1480 GCGGGTCTCTCTTTTGCTGCAAAAGATGAAACTGGCGAGCGAACGGAGATTGTTGAAGTT 1539
Query 1879 CCAAACCATCCTTTCTTT-ATCGGTGCTCAATTCCACCCCGAGTTCAAATCCAGACCCGG 1937
|||| ||| ||||| ||| ||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 1540 CCAAGCCACCCTTT-TTTCATCGGTGCTCAATTCCATCCCGAGTACAAGTCGAGACCCGG 1598
Query 1938 GAAAGCT-TCTCCTCTGTTTTTAGGGCTCATTGCAGCATCGTGTGGCGAGTTAGACACAG 1996
|||| | ||||||||||| ||||| || || |||||||| ||||| ||| |||| |||
Sbjct 1599 GAAAA-TATCTCCTCTGTTCTTAGGACTAATAGCAGCATCATGTGGTGAGCTAGATGCAG 1657
Query 1997 TCCTGAATCCAGCTTC 2012
|||||||||||| |||
Sbjct 1658 TCCTGAATCCAGTTTC 1673
> Ahg946140 jgi|Araly1|946140|scaffold_702369.1
Length=1834
Score = 874 bits (473), Expect = 0.0
Identities = 1308/1698 (77%), Gaps = 109/1698 (6%)
Strand=Plus/Plus
Query 332 GGAA-GAAGATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGA 390
|||| |||||||||||| ||| |||| ||||||| || ||||||||| | || ||||||
Sbjct 12 GGAAGGAAGATGAAGTATGTGGTTGTCTCAGGAGGAGTAGTGAGTGGACTCGGAAAAGGA 71
Query 391 GTAACAGCAAGTAGTATTGGTGTTC-TCCTTAAAGCTTGTGGTCTT-CGAGTTACTTCTA 448
|| || ||||||||||| || || |||| ||| | ||||| ||| ||||| || | |
Sbjct 72 GTCACGGCAAGTAGTATCGG-ACTCATCCTCAAATCCTGTGG-CTTCCGAGTCACCGCCA 129
Query 449 TCAAAATCGATCCTTATC-TGAACACTGATGCTGGAACTATGTCTCCAT-TTGAACACGG 506
| ||||| |||||||| | | || | ||||||||| || ||||| || | ||||||| ||
Sbjct 130 TTAAAATAGATCCTTA-CTTAAATATTGATGCTGGGACCATGTCACC-TATTGAACATGG 187
Query 507 TGAAGTTTTTGTCTTGGACGATGGTGGTGAGGTGGATCTTGATCTTGGAAACTACGAAAG 566
|||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| || ||
Sbjct 188 TGAAGTTTACGTCTTGGACGATGGTGGCGAGGTTGATCTTGATCTTGGGAACTATGAGAG 247
Query 567 GTTTC-TAGATATCAAATTAACAAGAGACAATAACATCACTACTGGGAAAA-TTTATCAG 624
| ||| | ||||| || | || || || || ||||| ||||| |||||| ||||| ||
Sbjct 248 G-TTCATGGATATTAAGCTGACCAGTGAAAACAACATAACTAC-CGGAAAAGTTTATAAG 305
Query 625 CATGTTATTGCTAAAGAGAGGAAAGGAGATTAT-TTGGGAAAGACTGTTCAGGTTGTTCC 683
||||| ||| |||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 306 CATGTGCTTGAGAAAGAGAGGAGAGGAGATTATCTTGGG-AAGACTGTTCAGGTTGTTCC 364
Query 684 TCATGTCACTGATGCAATTCAAGATTGGATCGAGAGAGTTGC--GGTTATTCCTGTTGAT 741
|||| | |||||||| |||||||| ||||| ||| | | ||| || |||||||| |||
Sbjct 365 TCATATTACTGATGCTATTCAAGAATGGATTGAGCGTGCTGCTAGG--ATTCCTGTAGAT 422
Query 742 GGAGAAG--AGGATCCTGCTGATGTTTGCGTTATTGAA-TTAGGTGGAACAATAGGTGAT 798
||| || ||| ||| ||||||||||| || |||||| || || ||||| ||||| |||
Sbjct 423 GGA-CAGTCAGG-TCCAGCTGATGTTTGTGTCATTGAACTT-GGAGGAACTATAGGAGAT 479
Query 799 ATTGAATCCGCGCCTTTTATCGAGGCGCTTGGTCAATTCTCTTACCGTGTAGGCCCAGGG 858
|| || ||| ||||||||| || || ||||| || ||||| ||||| |||||| | |
Sbjct 480 ATAGAGTCCATGCCTTTTATTGAAGCTCTTGGGCAGTTCTCATACCGCGTAGGCACTGAC 539
Query 859 AATTTCTGTC-TGGTCCATGTCAGCCTCGTGCCTGTGCTT-AATGTTGTTGGTGAACAGA 916
||||| || | || |||||||||| || |||||||| || |||||||||||||||||||
Sbjct 540 AATTTTTG-CTTGATCCATGTCAGTCTTGTGCCTGT-ATTGAATGTTGTTGGTGAACAGA 597
Query 917 AAACTAAGCCGACACAGCATAGTG-TCAAGGGGC-TACGAGG-ATTGGGCTTGACG-CCG 972
| ||||| || || || ||||| | || | | | || |||| || ||||||| | ||
Sbjct 598 AGACTAAACCAACGCAACATAGCGTTC--GAGACTTAAGAGGCCTT-GGCTTGA-GCCCT 653
Query 973 GATATCTTAGCTTGTAGGAGCACAAAGCCACTTGAAGATAATGTGAAAGAAAAACTAGCT 1032
||||||| ||||| | ||||||||||||||||||||||||||||| | ||||| ||
Sbjct 654 AATATCTTGGCTTGCCGAAGCACAAAGCCACTTGAAGATAATGTGAAGGCCAAACTCTCT 713
Query 1033 CAGTTTTGCCATGTCCCGCTTGAGTATATCT-TCACTCTCTATGAT-GTTCCCAACATTT 1090
|||||||||||||||||| | || | | | |||||||||| ||| || ||||||||||
Sbjct 714 CAGTTTTGCCATGTCCCGATGGAAAACGT-TGTCACTCTCTACGATTGT-CCCAACATTT 771
Query 1091 GGCGTATTCCTTTG-TTGCT-AAAGGATCAGAAAG-CTCATCT-GGCAATCTCAAAAGTG 1146
||| ||||| ||| || || |||| | || |||| | || | ||| || | ||
Sbjct 772 GGCACATTCCATTGCTT-CTCAAAGAA-CA-AAAGGCACA-CGAGGCGATTTTGCGTGT- 826
Query 1147 CTC-AATCTTGCTAGTA-TT-CTTAATGAGCCTTC-TCTAGGGGAATGGACTTCCA-GAG 1201
|| || ||| || | || | || |||||| | | ||| ||||||| ||| | | |
Sbjct 827 CTTGAACCTTAA-AGGAGTTGCA-AAGGAGCCTGCAT-TAGAGGAATGGTCTTTGATG-G 882
Query 1202 CTGAATT-ATGTGACAATTTACATGTGCCGGTGAGAATCGCTGTTGTGGGGAAATATACA 1260
|| || | | ||||| || ||||| ||||| ||||| ||||| || || ||||||||
Sbjct 883 CTAAAATGACA-GACAAGTTGCATGTTCCGGTAAGAATTGCTGTGGTTGGAAAATATACT 941
Query 1261 G-GCCTCTCTG-ATGCTTATCTCTCTGTCTT-A-AAGGCTCTCTTACATGCTTCTGTGGC 1316
| || | | || || ||||||| || | || | ||||||||||| || |||||||||||
Sbjct 942 GAGCTT-T-TGGATTCTTATCTGTC-GA-TTCACAAGGCTCTCTTGCACGCTTCTGTGGC 997
Query 1317 TTGTCGCAA-AAAGCTCGT-AGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAAGAAACT 1374
| |||| ||| || || | | |||||| || ||||| ||||||| || ||| |
Sbjct 998 AAGGGGCAAGAAA-CTTGTCA-TAGATTGGATTTCAGCTAGTGATCTTGAGCAAGGTGCA 1055
Query 1375 GAGAAAG-AGAATCCAGA-TGCGTATAAAGCTGCTTGGAAGTTGCTAAAGGGTG-TAGAT 1431
| |||| ||||||| || ||| ||||| || || |||||||| || ||||||| | |||
Sbjct 1056 AA-AAAGGAGAATCC-GAATGCATATAAGGCCGCCTGGAAGTTACTCAAGGGTGCT-GAT 1112
Query 1432 GGAATTCTTGTACCTGGAGGTTTTGGTGATAGAGGAGTGGAAGGGAAGATTCTTGCTGC- 1490
|| |||||||| || ||||||||||| ||||||| || ||||| ||||| || || ||
Sbjct 1113 GGTATTCTTGTGCCGGGAGGTTTTGGCAATAGAGGTGTAGAAGGAAAGATGCTGGCAGCG 1172
Query 1491 AAAGTATGC-ACGTGAAAACAAAATCCCGTTCCTCGGTATTTGTCTTGGAATGCAGATT- 1548
||| || || | | ||||||| | | || | ||||||||| ||||| || ||||| | |
Sbjct 1173 AAA-TACGCCA-GAGAAAACAGAGTTCCATACCTCGGTATCTGTCTAGGGATGCA-ACTC 1229
Query 1549 GCTGTCATCGAGTTTGC-ACGATCAGTTCTAAGCTTGCAAGACGCAAACAGCACAGAATT 1607
||||| || |||||||| | || | || ||| | |||| ||| ||||||||||| ||| |
Sbjct 1230 GCTGTGATTGAGTTTGCCA-GAACTGTACTAGGTTTGCCAGATGCAAACAGCACTGAACT 1288
Query 1608 TAA-CCCTGAA-ACCAAACATCCTTGCATCATTTTCATGCCCGAGGGTTCTAAAACTCAT 1665
| | ||| || |||||| | || || | ||||||||||| ||||| || ||||| |||
Sbjct 1289 TGATCCC--AACACCAAAAACCCATGTGTTATTTTCATGCCTGAGGGCTCGAAAACGCAT 1346
Query 1666 ATGGGAGGCACTATGCGCTTAGGATCAAGAA-AATCC-ATCTT-CAATGTCAAAGACAGC 1722
||||||||||||||| | ||||| ||||||| || || | ||| || | | |||||| |
Sbjct 1347 ATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAA-CCTA-CTTTCAGTCT-AAAGACTCC 1403
Query 1723 AAATCTGCAAAACTATACGAGAACAAAAGCTTTGTAGATGAGAGGCATCGTCACAGATAC 1782
||||| ||||||||||| | ||||| | | ||||||||||| || || || ||||||||
Sbjct 1404 AAATCAGCAAAACTATATGGGAACAGAGGTTTTGTAGATGAAAGACACCGACACAGATAT 1463
Query 1783 GAGGTGAATCCGGACATGGTTGAACGCCTT-GAGAAGGC-C-GGTCTTTCTTTCGCTGCG 1839
||||| ||||| ||||||||| ||| || |||| | | | || || | ||| | | |
Sbjct 1464 GAGGTAAATCCAGACATGGTTCCACGT-TTCGAGA-G-CTCTGGACTCACATTCACAG-G 1519
Query 1840 AAA-GATGAAACTGG-CAAACGCATGGAGATCATTGAACTTCCAAACCATCCTTTCTTT- 1896
||| ||||| || || || || ||||||||| ||||||| || || ||||| || ||
Sbjct 1520 AAAAGATGAGACGGGTCAG-CGAATGGAGATCTTTGAACTGCCTAATCATCCGTT-TTAC 1577
Query 1897 ATCGGTGCTCAATTCCACCCCGAGTTCAAATCCAGACCCGGGAAAGCTTCTCCTCTGTTT 1956
|| || ||||| ||||| ||||||| |||||| |||||||| ||| | ||||||||||||
Sbjct 1578 ATTGGAGCTCAGTTCCATCCCGAGTACAAATCAAGACCCGGAAAACCATCTCCTCTGTTT 1637
Query 1957 TTAGGGCTCATTGCAGCA 1974
|||| || |||| ||||
Sbjct 1638 CTAGGACTAATTGGAGCA 1655
> Ahg908150 jgi|Araly1|908150|Al_scaffold_0002_1231
Length=693
Score = 230 bits (124), Expect = 5e-59
Identities = 248/302 (82%), Gaps = 32/302 (11%)
Strand=Plus/Plus
Query 1871 TTGAACTTCCAAACCATCCTTTCTTTATCGGTGCTCAATTCCACCCCGAGTTCAAATCCA 1930
||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 394 TTGAACTTCCAAACCATCCTTTCTTCATCGGTGCTCAATTCCACCCAGAGTACAAATCCA 453
Query 1931 GACCCGGGAAAGCTTCTCCTCTGTTTT--TAGGGCT---C--ATT-G-CA--G--CA--- 1974
|||||||||||||||||||||| | || |||| || | ||| | || | ||
Sbjct 454 GACCCGGGAAAGCTTCTCCTCTCTGTTCATAGGTCTGAGCCTATTTGTCATCGATCACAA 513
Query 1975 -TC---G-----T---GTGGCGAGTTAGACACAGTCCTGAATCCAGCTTCTGCTCATCAA 2022
|| | | |||| ||| ||||||||||| |||||| ||| |||| |||||||
Sbjct 514 CTCATTGCAGCATCTTGTGGTGAGCTAGACACAGTCATGAATCAAGCCTCTGTTCATCAA 573
Query 2023 CAT-TCGATTAGTAACGGTCC-AACAAACATTTTCATCAATGGAACTTCCAAGAAATCTC 2080
||| | ||||||||||||||| || |||| |||| ||| |||||| ||||||||| |||
Sbjct 574 CATCT-GATTAGTAACGGTCCGAA-AAACGTTTTTGTCAGTGGAACCTCCAAGAAAGCTC 631
Query 2081 CCAATGGCTTGGCTGATGTAAGATATAATAACGGCTACTGCAATGGCCTCTACACTAGAT 2140
| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 632 CTAATGGCTTGGCTGATGTAAGATACAATAACGGATACTGCAACGGCCTCTACACTAGAT 691
Query 2141 AG 2142
||
Sbjct 692 AG 693
Score = 189 bits (102), Expect = 9e-47
Identities = 114/120 (95%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 1264 CTCTCTGATGCTTATCTCTCTGTCTTAAAGGCTCTCTTACATGCTTCTGTGGCTTGTCGC 1323
|||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CTCTTTGATGCCTATCTCTCTGTCTTGAAGGCTCTCTTACATGCTTCTGTGGCTTGTCGC 60
Query 1324 AAAAAGCTCGTAGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAAGAAACTGAGAAAGAG 1383
|||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 61 AAAAAGCTCGAAGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAGGAAACTGCGAAAGAG 120
> Ahg908158 jgi|Araly1|908158|Al_scaffold_0002_1239
Length=675
Score = 193 bits (104), Expect = 7e-48
Identities = 116/122 (95%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 1262 GCCTCTCTGATGCTTATCTCTCTGTCTTAAAGGCTCTCTTACATGCTTCTGTGGCTTGTC 1321
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 107 GCCTCTTTGATGCCTATCTCTCTGTCTTGAAGGCTCTCTTACATGCTTCTGTGGCTTGTC 166
Query 1322 GCAAAAAGCTCGTAGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAAGAAACTGAGAAAG 1381
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 167 GCAAAAAGCTCGAAGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAGGAAACTGCGAAAG 226
Query 1382 AG 1383
||
Sbjct 227 AG 228
Score = 135 bits (73), Expect = 1e-30
Identities = 79/82 (96%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1871 TTGAACTTCCAAACCATCCTTTCTTTATCGGTGCTCAATTCCACCCCGAGTTCAAATCCA 1930
||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 337 TTGAACTTCCAAACCATCCTTTCTTCATCGGTGCTCAATTCCACCCAGAGTACAAATCCA 396
Query 1931 GACCCGGGAAAGCTTCTCCTCT 1952
||||||||||||||||||||||
Sbjct 397 GACCCGGGAAAGCTTCTCCTCT 418
Score = 106 bits (57), Expect = 9e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 1303 CATGCTTCTGTGGCTTGTCGCAAAAAGCTCGTAGTTGATTGGGTTCCAGCTTGTGATCTC 1362
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 107 CATGCTTCTGTGGCTTGTCGCAAAAAGCTCGAAGTTGATTGGGTTCCAGCTTGTGATCTC 48
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473461230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5