BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30825.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473323 jgi|Araly1|473323|fgenesh2_kg.1__3277__AT1G30825.1 1775 0.0
Ahg937125 jgi|Araly1|937125|scaffold_501316.1 285 6e-76
Ahg932941 jgi|Araly1|932941|scaffold_400929.1 285 6e-76
Ahg894642 jgi|Araly1|894642|Al_scaffold_0006_2638 285 6e-76
Ahg931232 jgi|Araly1|931232|scaffold_303689.1 274 1e-72
Ahg907761 jgi|Araly1|907761|Al_scaffold_0002_842 268 6e-71
Ahg344273 jgi|Araly1|344273|fgenesh1_pg.C_scaffold_4000615 268 6e-71
Ahg928779 jgi|Araly1|928779|scaffold_301236.1 215 7e-55
> Ahg473323 jgi|Araly1|473323|fgenesh2_kg.1__3277__AT1G30825.1
Length=1246
Score = 1775 bits (961), Expect = 0.0
Identities = 1115/1185 (94%), Gaps = 28/1185 (2%)
Strand=Plus/Plus
Query 1 GTTATCGAAGAAACGTTCAAGCTGTGACAGAGAATCTCGGTCGTCTTCGTTTGTCTCCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTATCGAAGAAACGTTCAAGCTGTGACAGAGAATCTCGGTCGTCTTCGTTTGTCTCCGA 60
Query 61 CGAGCTCTCTTTCTTCTCCGATTAGATCCCGTGAGAAGAACTCAAAGGCTCTAGGGTTTC 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CGAGCTCTCTTTCTTCTCCGATTAGATCCCGTGAGAAGAACTCAAAGACTCTAGGGTTTA 120
Query 121 TCTGTGATTCAGTTAACTCCTTTAGATATCGTAAGAAAGTAATCGATGATACTATTGCAG 180
|| || | || || | | || || | || || | | || | ||||
Sbjct 121 TC-GT-A---AGA-AAGT-----A-AT--CG-ATGA---TA--C--T-AT--T---GCAG 152
Query 181 TCACATTCAAGGTTTCTTCTTCAAACGCTATTGACGCGAGCTCAAAATCTTGATAAAGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TCACATTCAAGGTTTCTTCTTCAAACGCTATTGACGCGAGCTCAAAATCTTGATAAAGCA 212
Query 241 GTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACA 272
Query 301 ATGAAGAATCCAAATCTGTTGTTGCTTTCGGTTTCGTTACCAAATCCACCACCTGAAGCA 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 273 ATGAAGAATCCAAATCTGTTGTTGCTTTCGGTTTCGTTACCGAATCCACCACCTGAAGCA 332
Query 361 ATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAACCACTTACGGGACA 420
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 333 ATGTCCTTTGATGGACTTCCTTTGGGAGCTATAGAAGCTATTAAAACTACTTACGGGACG 392
Query 421 GGTTTTCAAATACTTGATCCTCCTAGAGATGGTTTTAGTTTAACCCTCAAGCTCAATTTC 480
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 393 GGTTTTCAAATACTTGATCCTCCAAGAGATGGGTTTAGTTTAACCCTGAAGCTCAATTTC 452
Query 481 TCTAAAGTTCGTCCTGATGAAGAGTTATTAACGAAGCTAGCTTCCATTAGAGAAGTGGTG 540
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 453 TCTAAAGTTCGTCCGGACGAAGAGTTATTAACGAAGCTAGCTTCCATTAGAGAAGTTGTG 512
Query 541 ATGGGTGCACCGTTAAAAATCATTTTCAAGCATTTAGCTTCAAGGACGGTTGCTCCTGAG 600
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 513 ATGGGTGCGCCGCTAAAAATCATTTTCAAGCATTTAGCTTCAAGAACGGTTGCTCCTGAG 572
Query 601 CTGGATAGGCTTGTAGCAATTATGCATAGACCTAACGAGACGTTTTTCCTCGTGCCTCAG 660
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 573 CTGGATAGGCTTGTAGCAGTTATGCATAGACCTAACGAGACATTTTTCCTCGTGCCTCAG 632
Query 661 GCGGATAAAGTCACTGTGGCATTTCCTATGAGATTTAAAGACTCCGTAGACACGATTCTG 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 633 GCGGATAAAGTCACCGTGGCATTTCCTATGAGATTTAAAGACTCCGTAGACACAATTCTA 692
Query 721 GCGACTTCTTTCCTTAAGGAATTTGTAGAGGCGAGGCGTGCTGCTGCGCTTAATACTGCT 780
|| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 693 GCAACTTCTTTCTTTAAGGAATTTGTAGAGGCGAGGCGTGCTGCTGCACTTAATACTGCT 752
Query 781 CCTTCTTGTTCTTGGTCTCCAACCGCACCGCAGGAATTAGAGGGAGCTCCTAAAGAAACA 840
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 753 CCTTCTTGTTCGTGGTCTCCAACCGCACCGCATGAATTAGAAGGAGCTCCTAAAGAAACA 812
Query 841 CTATCCGCTAATGCCGGTTTTGTAACTTTTGTCATTTTTCCTCGGCATGTGGAAGGGAAA 900
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CTCTCTGCTAATGCCGGTTTTGTAACTTTTGTCATTTTTCCTCGGCATGTGGAAGGGAAA 872
Query 901 AAGCTCGATCGTACTGTCTGGAATTTATCGACCTTTCATGCTTATGTTAGTTATCACGTC 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 873 AAGCTTGATCGTACTGTCTGGAATTTATCGACCTTTCATGCTTATGTTAGTTACCATGTC 932
Query 961 AAGTTCTCAGAGGGATTTATGCACACCAGGATGCGGCGTCGCGTGGAATCTATGATTCAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 AAGTTCTCAGAGGGATTTATGCACACCAGGATGCGGCGTCGCGTGGAATCTATGATTCAG 992
Query 1021 GCTCTGGATCAAGCTAAGCCATTGGAGAAAACAAGATCGATGAACAACAAGTCATTTAAA 1080
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 993 GCTCTGGATCAAGCTAAGCCATTGGAGAAAACAAGATCAATGAACAACAAGTCATTTAAA 1052
Query 1081 CGGCTAGGACTCAACGAGGTCAATCACACCAACTCGAAGTAGTTGGATTTCTCACGAAGC 1140
||||||||||||||||| | ||||||||||||||| |||||||| |||||||||| ||||
Sbjct 1053 CGGCTAGGACTCAACGATGCCAATCACACCAACTCCAAGTAGTTTGATTTCTCACAAAGC 1112
Query 1141 AATTTTGTAAAAACTTGTGATTAGCTGAGACATGTAttttttttA 1185
|||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1113 AATTTTGTAAAAACTTGTGAGTAGCTGAGACATGTTTTTTTTTTA 1157
Score = 154 bits (83), Expect = 2e-36
Identities = 93/98 (95%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1207 TTTATTTTAGTACAATTCTTTCAGATATTTCTATACATCTGATCTTGCTAAATATTTGAA 1266
||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1149 TTTTTTTTAGTACAATTCTTTCAGATATTTCTATACATCTGATCCTGCGAAATATTTGAA 1208
Query 1267 CAAATGTATAATGTGAAAATTGTAAGAAACTCACCTTG 1304
|||||||||| |||||||||||||||||| ||||||||
Sbjct 1209 CAAATGTATAGTGTGAAAATTGTAAGAAATTCACCTTG 1246
> Ahg937125 jgi|Araly1|937125|scaffold_501316.1
Length=915
Score = 285 bits (154), Expect = 6e-76
Identities = 187/203 (92%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287
|||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||||
Sbjct 285 TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 344
Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346
||||||||||||| ||||||||||||| || ||||||||| | |||||||||||||||||
Sbjct 345 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 403
Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 404 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 463
Query 407 CCACTTACGGGACAGGTTTTCAA 429
| |||||| |||| |||||||||
Sbjct 464 CTACTTACAGGACTGGTTTTCAA 486
> Ahg932941 jgi|Araly1|932941|scaffold_400929.1
Length=914
Score = 285 bits (154), Expect = 6e-76
Identities = 187/203 (92%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287
|||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||||
Sbjct 284 TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 343
Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346
||||||||||||| ||||||||||||| || ||||||||| | |||||||||||||||||
Sbjct 344 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 402
Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 403 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 462
Query 407 CCACTTACGGGACAGGTTTTCAA 429
| |||||| |||| |||||||||
Sbjct 463 CTACTTACAGGACTGGTTTTCAA 485
> Ahg894642 jgi|Araly1|894642|Al_scaffold_0006_2638
Length=432
Score = 285 bits (154), Expect = 6e-76
Identities = 187/203 (92%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287
|||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||||
Sbjct 150 TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 209
Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346
||||||||||||| ||||||||||||| || ||||||||| | |||||||||||||||||
Sbjct 210 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 268
Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 269 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 328
Query 407 CCACTTACGGGACAGGTTTTCAA 429
| |||||| |||| |||||||||
Sbjct 329 CTACTTACAGGACTGGTTTTCAA 351
> Ahg931232 jgi|Araly1|931232|scaffold_303689.1
Length=637
Score = 274 bits (148), Expect = 1e-72
Identities = 185/203 (91%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287
||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||||
Sbjct 245 TCTTGATAAAGTTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 304
Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346
||||||||||||| ||||||||||||| || ||||||||| | |||||||||||||||||
Sbjct 305 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 363
Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 364 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 423
Query 407 CCACTTACGGGACAGGTTTTCAA 429
| |||||| ||| |||||||||
Sbjct 424 CTACTTACAAGACTGGTTTTCAA 446
> Ahg907761 jgi|Araly1|907761|Al_scaffold_0002_842
Length=465
Score = 268 bits (145), Expect = 6e-71
Identities = 184/203 (91%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287
|||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||||
Sbjct 93 TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 152
Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346
|||||||||| || |||| ||| |||| || ||||||||| | |||||||||||||||||
Sbjct 153 TGTTCAGGTGGCAGTGAATAATGCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 211
Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 212 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 271
Query 407 CCACTTACGGGACAGGTTTTCAA 429
| |||||| |||| |||||||||
Sbjct 272 CTACTTACAGGACTGGTTTTCAA 294
> Ahg344273 jgi|Araly1|344273|fgenesh1_pg.C_scaffold_4000615
Length=507
Score = 268 bits (145), Expect = 6e-71
Identities = 185/204 (91%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287
||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||||
Sbjct 135 TCTTGATAAAGTTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 194
Query 288 TGTTCAGGTGACAA-TGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAAT 345
||||||||||| || ||||||||||||| || ||||||||| | ||||||||||||||||
Sbjct 195 TGTTCAGGTGA-AAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAAT 252
Query 346 CCACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAA 405
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 253 CCACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAA 312
Query 406 ACCACTTACGGGACAGGTTTTCAA 429
| |||||| ||| |||||||||
Sbjct 313 GCTACTTACATGACTGGTTTTCAA 336
> Ahg928779 jgi|Araly1|928779|scaffold_301236.1
Length=1142
Score = 215 bits (116), Expect = 7e-55
Identities = 133/141 (94%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 259 TGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACAATGAAGAATCCAAATCTG 318
||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| ||
Sbjct 904 TGGATTGCATTTGATGATGTTTGTTACCATGTTCAGGTGACAGTGAAGAATCCAAACCTC 963
Query 319 TTGTTGCTT-TCGGTTTCGTTACCAAATCCACCACCTGAAGCAATGTCCTTTGATGGACT 377
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TTGTTGCTTGT-GGTTTCGTTACCAAATCCACCACCTGAAGCAATGTCCTTTGATGGACT 1022
Query 378 TCCTTTAGGAGCTATAGAAGC 398
||| |||||||||||||||||
Sbjct 1023 TCCATTAGGAGCTATAGAAGC 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5