BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30840.1 Length=1590 Score E Sequences producing significant alignments: (Bits) Value Ahg473325 jgi|Araly1|473325|fgenesh2_kg.1__3279__AT1G30840.1 2418 0.0 > Ahg473325 jgi|Araly1|473325|fgenesh2_kg.1__3279__AT1G30840.1 Length=1563 Score = 2418 bits (1309), Expect = 0.0 Identities = 1490/1576 (95%), Gaps = 18/1576 (1%) Strand=Plus/Plus Query 4 TTGTGTTGTTGGAGACTGAACCATCAACGCTTTTTCGACACTTCTTCTTCTTCCTCCTTT 63 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1 TTGTGTTGTTGGAGACTGAACCATCAACGCTTTTTCAACACTTCTCCTTCTTCCTCCTTT 60 Query 64 CTCTCTTCATGcaaaatcacagttacaagaaataaacaaaagattataaatcaaaacata 123 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | Sbjct 61 CTCTCTTCATGCAAAATCACAGTTACAAGAAATAAACAAAAGATTAT--A--AAAACACA 116 Query 124 aagagacaaaaatGAGTGATGGTCGAGTTAACGCAGATCCTCAACAAGAAGAGAACATGG 183 ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 117 AAGAGGCAAAAATGAGTGATGGTCGAGTTAACGCAGATCAACAACAACAAGAGAACATGG 176 Query 184 TTAAACCACCGGTTAAGAGATCTCTCACTCTCCTCATCGTGACTTACTTTTTTCTCTTCT 243 |||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||| Sbjct 177 TTAAACCACCGGTTAAGAGATCTCTCACTCTCGTCATCGTCACTTACGTTTGTCTCTTCG 236 Query 244 TCGGCTCTATCGCTTCGAGCCTTCTCGCGAAGTACTATTTCGTCTACGGTGGCTCGAGCC 303 ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 237 TCGGCTCCATCGCTTCGAGCCTTCTCGCGAAGTACTACTTCGTCCACGGTGGCTCGAGCC 296 Query 304 GGTGGGTCTCCACGTGGGTTCAATCTGCTGGCTTCCCTCTCCTCCTCATCCTAATCTACT 363 |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 297 GGTGGGTCTCGACGTGGGTTCAATCCGCTGGCTTCCCTCTCCTCCTCACCCTAATCTACT 356 Query 364 TCCCTCACTACGTTCTCAAAACCACCACTCGCCGTCCTTTCACGCGCTTCACGCTCCGCC 423 |||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 357 TCCCTCGCTATGTTTTCAAAACCACCACCCGCCGTCCTTTCACGCGCTTCACGCGCCGCC 416 Query 424 ATCTCATCTTCTCCGTGTTGATCGGGCTTGTTCTCGGTTTCAACAACTTCCTCTTCTCAT 483 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 417 ATCTCATCTTCTCCGTGTTGATCGGGTTTGTTCTCGGTTTCAACAACTTCCTCTTCTCAT 476 Query 484 GGGGAACCTCGTACCTTCCGGTGTCCACGTCATCGCTTCTCCTCTCGACACAACTCGTCT 543 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 477 GGGGAACCTCGTACCTTCCGGTGTCCACGTCATCGCTTCTCCTCTCGACACAACTTGTCT 536 Query 544 TCACTCTCATTTTGTCTAG-GATCATAGTGAAACAGAAGATCACTTTCTCAAACCTCAAC 602 ||||||||||||||||| | |||||| ||||||||||| |||| |||||||||||||||| Sbjct 537 TCACTCTCATTTTGTCT-GCGATCATTGTGAAACAGAAAATCAATTTCTCAAACCTCAAC 595 Query 603 TGCGTTGTCCTGTTGACGTTAAGCTCTGTTTTGTTGGCTCTTGATTCGAGTAAAGATAAA 662 || ||||| || ||||||||||||||||||||||||||||| | |||||||| ||||||| Sbjct 596 TGTGTTGTTCTCTTGACGTTAAGCTCTGTTTTGTTGGCTCTCGGTTCGAGTAGAGATAAA 655 Query 663 CCGTCCGGTTTAACCAAAACCAAGTATTTCATCGGGTATGTATCCACGATCGGAGCCGGT 722 ||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 656 CCGGCCGGTTTAACTAAAACCAAGTATTACATCGGGTTTGTATCCACGATCGGAGCCGGT 715 Query 723 TTACTCTTCGCTCTTTACCTCCCCGTGACGGAGAAGCTATACCGTACCGTTTATTGTTAC 782 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 716 TTACTCTTCGCTCTTTACCTCCCCGTGACGGAGAAGCTATACCGTAGCGTTTATTGTTAC 775 Query 783 GCGATGGTCATGGAGGTGCAACTGGTGATGGAATTCGCAGCGACGGTTTTCGCGACAATC 842 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 776 GCGATGGTCATGGAGGTGCAACTGGTGATGGAATTCGCTGCCACGGTTTTCGCGACAATC 835 Query 843 GGTATGGCTTGCGAAGGCGGGTTTAAG-GAAATGGTTAAGGAAGCGAACCATGTTTTCAC 901 ||||||| || ||| ||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 836 GGTATGGTTTTCGACGGCGGGTTT-AGAGAAATGGTTAAGGAAGCTAACCATGTTTTCAC 894 Query 902 CAAAGGACCAACATTTTATTGGACGTTTGCGATACTAGCAAATGTGGTGACGTGGCAGCT 961 ||||||||||||| ||||||||||| ||||||| | || |||||||||||||||||||| Sbjct 895 CAAAGGACCAACAGTTTATTGGACGGTTGCGATTTTTGCGAATGTGGTGACGTGGCAGCT 954 Query 962 CTCTTTCGCAGCCACGTCAGGGATGGTTTACTTGACGTCAGGTATCACCGGAGGTATCTG 1021 || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 955 CTGTTTCGCAGCCACGTCAGGGATAGTTTACTTGACCTCAGGTATCACCGGAGGTATCTG 1014 Query 1022 CATGACGGCGTTGCTCGCGATGAATGTGATAGGAGGTGTGGTGGCTTACGGTGACGTGTT 1081 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||| Sbjct 1015 CATGACGGCGTTGCTTGCGATGAATGTGATAGGAGGTGTGGTGGTTTACGGTGATGAGTT 1074 Query 1082 TGGTGGAGTGAAGATTGTGTCGACGGTGCTATGTATTTGGGGATTCTCATCTTACA-CAT 1140 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | Sbjct 1075 TGGTGGAGTGAAGATTGTGTCGACGGTGCTATGTATTTGGGGATTCTCATCGTACATC-T 1133 Query 1141 ACGGGATGTATATGAAGATGAAGAAGGAGGAGAAGGAGAAGGGAGAATATTCCGGCGTAA 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1134 ACGGGATGTATATGAAGATGAAGAAGGAGGAGAAGGAGAAGGGAGAATATTCTGGCGTAA 1193 Query 1201 AGACGACGGAAGACAGCGGAGAGATGGAGGTGGAAATGGGAAATGTTAAAGATGACGTGG 1260 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1194 AGACGACGGAAGACGGCGGAGAGATGGAGGTGGAAATGGGAAAAGTTAAAGATGACGTGG 1253 Query 1261 CGGCGGCGGATGATAGGGCTTGAAGATATCTGTGTGATTGAGACGGCCGTTATGATTATT 1320 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 CGGCGGCGGATGATAGGGTTTGAAGATATCTGTGTGATTGAGACGGCCGTTATGATTATT 1313 Query 1321 ATTAGGAAGGAAGCCAACaaaaaaaaaaaaaGTAGTAGTAtc-tttttgtgttctttctt 1379 ||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||| Sbjct 1314 ATTAGGAAGGAAG-C--C---AAAAAAAAAAGTAGTAGTATCTTTTTTGTGTTCTTTCTT 1367 Query 1380 tttctcaccttatgtttttttagtaatgcatttgcttttgtttttcttgtt-tttttagg 1438 ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1368 TTTCTCACCTTATTTTTTTTTAGTAATGCATTTGCTTTTGTTTTGGTTGTTGTTTTTAGG 1427 Query 1439 ttgttttgtttttccttttctggttatttttATGAATTATCCTCTTATCATGGCCACAAC 1498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1428 TTGTTTTGTTTTTCCTTTTCTGGTTATTTTTATGAATTATCCTCTTATCATGGCCACAAC 1487 Query 1499 TAATGATGTTGTACACTTTTTAAGTGTGGATTTTCCAATGTCGGTTGATAAGTATGTATT 1558 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1488 TAATGATGTTGTACACTTTTTAAGTGTGGATTTTCCAATGTGGGTCGATAAGTATGTATT 1547 Query 1559 TTTCTGTTATCTATGG 1574 |||||||||||||||| Sbjct 1548 TTTCTGTTATCTATGG 1563 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59573143180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5