BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30840.1
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473325 jgi|Araly1|473325|fgenesh2_kg.1__3279__AT1G30840.1 2418 0.0
> Ahg473325 jgi|Araly1|473325|fgenesh2_kg.1__3279__AT1G30840.1
Length=1563
Score = 2418 bits (1309), Expect = 0.0
Identities = 1490/1576 (95%), Gaps = 18/1576 (1%)
Strand=Plus/Plus
Query 4 TTGTGTTGTTGGAGACTGAACCATCAACGCTTTTTCGACACTTCTTCTTCTTCCTCCTTT 63
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1 TTGTGTTGTTGGAGACTGAACCATCAACGCTTTTTCAACACTTCTCCTTCTTCCTCCTTT 60
Query 64 CTCTCTTCATGcaaaatcacagttacaagaaataaacaaaagattataaatcaaaacata 123
||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 61 CTCTCTTCATGCAAAATCACAGTTACAAGAAATAAACAAAAGATTAT--A--AAAACACA 116
Query 124 aagagacaaaaatGAGTGATGGTCGAGTTAACGCAGATCCTCAACAAGAAGAGAACATGG 183
||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 117 AAGAGGCAAAAATGAGTGATGGTCGAGTTAACGCAGATCAACAACAACAAGAGAACATGG 176
Query 184 TTAAACCACCGGTTAAGAGATCTCTCACTCTCCTCATCGTGACTTACTTTTTTCTCTTCT 243
|||||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||
Sbjct 177 TTAAACCACCGGTTAAGAGATCTCTCACTCTCGTCATCGTCACTTACGTTTGTCTCTTCG 236
Query 244 TCGGCTCTATCGCTTCGAGCCTTCTCGCGAAGTACTATTTCGTCTACGGTGGCTCGAGCC 303
||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 237 TCGGCTCCATCGCTTCGAGCCTTCTCGCGAAGTACTACTTCGTCCACGGTGGCTCGAGCC 296
Query 304 GGTGGGTCTCCACGTGGGTTCAATCTGCTGGCTTCCCTCTCCTCCTCATCCTAATCTACT 363
|||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 297 GGTGGGTCTCGACGTGGGTTCAATCCGCTGGCTTCCCTCTCCTCCTCACCCTAATCTACT 356
Query 364 TCCCTCACTACGTTCTCAAAACCACCACTCGCCGTCCTTTCACGCGCTTCACGCTCCGCC 423
|||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 357 TCCCTCGCTATGTTTTCAAAACCACCACCCGCCGTCCTTTCACGCGCTTCACGCGCCGCC 416
Query 424 ATCTCATCTTCTCCGTGTTGATCGGGCTTGTTCTCGGTTTCAACAACTTCCTCTTCTCAT 483
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 417 ATCTCATCTTCTCCGTGTTGATCGGGTTTGTTCTCGGTTTCAACAACTTCCTCTTCTCAT 476
Query 484 GGGGAACCTCGTACCTTCCGGTGTCCACGTCATCGCTTCTCCTCTCGACACAACTCGTCT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 GGGGAACCTCGTACCTTCCGGTGTCCACGTCATCGCTTCTCCTCTCGACACAACTTGTCT 536
Query 544 TCACTCTCATTTTGTCTAG-GATCATAGTGAAACAGAAGATCACTTTCTCAAACCTCAAC 602
||||||||||||||||| | |||||| ||||||||||| |||| ||||||||||||||||
Sbjct 537 TCACTCTCATTTTGTCT-GCGATCATTGTGAAACAGAAAATCAATTTCTCAAACCTCAAC 595
Query 603 TGCGTTGTCCTGTTGACGTTAAGCTCTGTTTTGTTGGCTCTTGATTCGAGTAAAGATAAA 662
|| ||||| || ||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 596 TGTGTTGTTCTCTTGACGTTAAGCTCTGTTTTGTTGGCTCTCGGTTCGAGTAGAGATAAA 655
Query 663 CCGTCCGGTTTAACCAAAACCAAGTATTTCATCGGGTATGTATCCACGATCGGAGCCGGT 722
||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 656 CCGGCCGGTTTAACTAAAACCAAGTATTACATCGGGTTTGTATCCACGATCGGAGCCGGT 715
Query 723 TTACTCTTCGCTCTTTACCTCCCCGTGACGGAGAAGCTATACCGTACCGTTTATTGTTAC 782
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 716 TTACTCTTCGCTCTTTACCTCCCCGTGACGGAGAAGCTATACCGTAGCGTTTATTGTTAC 775
Query 783 GCGATGGTCATGGAGGTGCAACTGGTGATGGAATTCGCAGCGACGGTTTTCGCGACAATC 842
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 776 GCGATGGTCATGGAGGTGCAACTGGTGATGGAATTCGCTGCCACGGTTTTCGCGACAATC 835
Query 843 GGTATGGCTTGCGAAGGCGGGTTTAAG-GAAATGGTTAAGGAAGCGAACCATGTTTTCAC 901
||||||| || ||| ||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 836 GGTATGGTTTTCGACGGCGGGTTT-AGAGAAATGGTTAAGGAAGCTAACCATGTTTTCAC 894
Query 902 CAAAGGACCAACATTTTATTGGACGTTTGCGATACTAGCAAATGTGGTGACGTGGCAGCT 961
||||||||||||| ||||||||||| ||||||| | || ||||||||||||||||||||
Sbjct 895 CAAAGGACCAACAGTTTATTGGACGGTTGCGATTTTTGCGAATGTGGTGACGTGGCAGCT 954
Query 962 CTCTTTCGCAGCCACGTCAGGGATGGTTTACTTGACGTCAGGTATCACCGGAGGTATCTG 1021
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 955 CTGTTTCGCAGCCACGTCAGGGATAGTTTACTTGACCTCAGGTATCACCGGAGGTATCTG 1014
Query 1022 CATGACGGCGTTGCTCGCGATGAATGTGATAGGAGGTGTGGTGGCTTACGGTGACGTGTT 1081
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 1015 CATGACGGCGTTGCTTGCGATGAATGTGATAGGAGGTGTGGTGGTTTACGGTGATGAGTT 1074
Query 1082 TGGTGGAGTGAAGATTGTGTCGACGGTGCTATGTATTTGGGGATTCTCATCTTACA-CAT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 1075 TGGTGGAGTGAAGATTGTGTCGACGGTGCTATGTATTTGGGGATTCTCATCGTACATC-T 1133
Query 1141 ACGGGATGTATATGAAGATGAAGAAGGAGGAGAAGGAGAAGGGAGAATATTCCGGCGTAA 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1134 ACGGGATGTATATGAAGATGAAGAAGGAGGAGAAGGAGAAGGGAGAATATTCTGGCGTAA 1193
Query 1201 AGACGACGGAAGACAGCGGAGAGATGGAGGTGGAAATGGGAAATGTTAAAGATGACGTGG 1260
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1194 AGACGACGGAAGACGGCGGAGAGATGGAGGTGGAAATGGGAAAAGTTAAAGATGACGTGG 1253
Query 1261 CGGCGGCGGATGATAGGGCTTGAAGATATCTGTGTGATTGAGACGGCCGTTATGATTATT 1320
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CGGCGGCGGATGATAGGGTTTGAAGATATCTGTGTGATTGAGACGGCCGTTATGATTATT 1313
Query 1321 ATTAGGAAGGAAGCCAACaaaaaaaaaaaaaGTAGTAGTAtc-tttttgtgttctttctt 1379
||||||||||||| | | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1314 ATTAGGAAGGAAG-C--C---AAAAAAAAAAGTAGTAGTATCTTTTTTGTGTTCTTTCTT 1367
Query 1380 tttctcaccttatgtttttttagtaatgcatttgcttttgtttttcttgtt-tttttagg 1438
||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1368 TTTCTCACCTTATTTTTTTTTAGTAATGCATTTGCTTTTGTTTTGGTTGTTGTTTTTAGG 1427
Query 1439 ttgttttgtttttccttttctggttatttttATGAATTATCCTCTTATCATGGCCACAAC 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TTGTTTTGTTTTTCCTTTTCTGGTTATTTTTATGAATTATCCTCTTATCATGGCCACAAC 1487
Query 1499 TAATGATGTTGTACACTTTTTAAGTGTGGATTTTCCAATGTCGGTTGATAAGTATGTATT 1558
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1488 TAATGATGTTGTACACTTTTTAAGTGTGGATTTTCCAATGTGGGTCGATAAGTATGTATT 1547
Query 1559 TTTCTGTTATCTATGG 1574
||||||||||||||||
Sbjct 1548 TTTCTGTTATCTATGG 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59573143180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5