BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G30845.1

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473326 jgi|Araly1|473326|fgenesh2_kg.1__3280__AT1G30845.1         710    0.0  


> Ahg473326 jgi|Araly1|473326|fgenesh2_kg.1__3280__AT1G30845.1
Length=569

 Score =  710 bits (384),  Expect = 0.0
 Identities = 493/544 (91%), Gaps = 13/544 (2%)
 Strand=Plus/Plus

Query  25   cttcttcAATTTTCAGATTTGATAGCTCTCAAAATCGTTAAACTACAGAAACGAAAAAGG  84
            ||| ||||||||||||||||||||||||||||||||| |    || ||    | |||  |
Sbjct  1    CTTGTTCAATTTTCAGATTTGATAGCTCTCAAAATCG-T----TA-AG----G-AAATTG  49

Query  85   AAATTGCGGCGATC-TAAGGTTAAATCCATGGCTGATGCACATTTGAAGCAAAGAGGCTA  143
              |||    ||||| | ||||||||||||||||||||||||| |||||| ||||||||||
Sbjct  50   CGATTAAAACGATCTTGAGGTTAAATCCATGGCTGATGCACAGTTGAAGAAAAGAGGCTA  109

Query  144  TATCTCGGCAGTTGCAGCTGGACTCAATGCAGCTCTTGCAGCAATCTCTGCTAAGTTCTT  203
            ||||| |||| || ||||||||||||||||||||||||| || || || || ||||||||
Sbjct  110  TATCTGGGCAATTTCAGCTGGACTCAATGCAGCTCTTGCCGCCATTTCAGCCAAGTTCTT  169

Query  204  CACATCTCTTGTGATTAAGTATGGATTAGTTGTAATCTGCAATGTGGTTATGTGGGCATG  263
            | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  170  CTCATCTCTCGTGATTAAGTATGGATTAGTTGTAATCTGCAATGTGGTTATGTGGGCATG  229

Query  264  TTATGTAAACAGTTTAAGAGCTTTGTCCTCTCTACAAGCTACTGTCACAAACTTTGCTGC  323
            |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  230  TTATGTTAACAGCTTAAGAGCTTTGTCCTCTCTTCAAGCTACTGTCACAAACTTTGCTGC  289

Query  324  TAATTTTCTATCTTCTGGTTTAGCTGGTCTCTTTCTTTTTCAAGAATCGTTATCGTTTCG  383
            ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  290  TAATTTTCTATCTTCTGGTTTAGCTGGACTCTTTCTTTTTCAAGAATCGTTGTCGTTTCG  349

Query  384  TTGGTTTGCGGGAGCTTTATCGATTACTACCGGAGTTCTTATCCTCAGTAAGTCGAGTGT  443
            |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct  350  TTGGTTTGCGGGAGCTTTATCGATCACTATCGGAGTTCTAATCCTCAGTAAGTCGAGTGT  409

Query  444  CGATAAGAAGGTAAGCTCGGATTAATGGAGAATCGAATATGATAGCTTCTGTTTTGGAGA  503
            |||||||||||| |||||||||||||  ||||| || ||| ||||||| |||||||||||
Sbjct  410  CGATAAGAAGGTTAGCTCGGATTAATCAAGAATTGA-TATAATAGCTTTTGTTTTGGAGA  468

Query  504  AGGCTGCTTTTGGTTGAAAGGAATTAGAGATGTTAAGTTGTTCTGAGTTTTGAGTTTTAG  563
            ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  469  AGGCTACTTTTGGTTGAAAGGAATTAGACATGTTAAGTTGTTCTGAGTTTTGAGTTTTAG  528

Query  564  AGGT  567
            ||||
Sbjct  529  AGGT  532



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26838533568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5