BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30850.1 Length=1218 Score E Sequences producing significant alignments: (Bits) Value Ahg922170 jgi|Araly1|922170|scaffold_103451.1 1365 0.0 > Ahg922170 jgi|Araly1|922170|scaffold_103451.1 Length=955 Score = 1365 bits (739), Expect = 0.0 Identities = 890/961 (93%), Gaps = 17/961 (2%) Strand=Plus/Plus Query 12 ttttttttttCGTTGACAAATCTAGTTATGCCTCCTCCGGCAATGCTTGCGTTTGACGAT 71 |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 TTTTTTTTCCCGTTGAC-AATCTAGTTATGCCTCCTCCGGCAATGCTTACGTTTGACGAT 59 Query 72 GGTTTAGCCCGGAAATCTAACGATAATGAGTGGCAAGGTTTCAGAGTTTTTCCAGGAG-- 129 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 60 GGTTTAGCCCGGAAATCTAACGACAATGAGTGGCAAGGTTTCAGAGTTTTTCCCGGAGAA 119 Query 130 -A-AAATA--CTAACCCTAACCCTAATATAAATTTCTTGGTTAAGAAGGCAATTCTGCAG 185 | ||| | |||||||| ||||| || | ||||||||||||||||||||||||||||| Sbjct 120 AACAAAAACCCTAACCCTTACCCTGATTTCAATTTCTTGGTTAAGAAGGCAATTCTGCAT 179 Query 186 AACGAGAAATCAATCACTCCTCTTTTCTCCCGTTCGTCGGCAAGAGATGATAGCTTC-AG 244 | ||||||||||| || |||||||||||||||||| ||| ||||||| ||||||||| || Sbjct 180 AGCGAGAAATCAACCAATCCTCTTTTCTCCCGTTCTTCGACAAGAGACGATAGCTTCAAG 239 Query 245 AATTGTGTTGCCGCCGGCGTTGCCTCCTCCTAGAGACTCCACCGTTCCGCTTCCTATGCT 304 |||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||| Sbjct 240 -ATTGTGTTGCCGCCTGCGATGCCTCCTCCTAGAGACTCCGCAGTTCCGCTTCCTATGCT 298 Query 305 TCCGGAGCCGATGAGAGTCCGGAAGAAGCTTAGCCACCAAGAATCAGTCATATTTATGA- 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CCCGGAGCCGATGAGAGTCCGGAAGAAGCTTAGCCACCAAGAATCAGTCATATTTATGAC 358 Query 364 GCAAATCGCGTTTCGCAGAGAAAATCCTCTACAAGGAAGAAGATTTCAAATGTAACGCCT 423 | |||||||||| | ||||||| || ||||||||| |||||||||||||||||||||||| Sbjct 359 G-AAATCGCGTTACTCAGAGAAGATTCTCTACAAGAAAGAAGATTTCAAATGTAACGCCT 417 Query 424 TCTGCTTGTCTCTACCTGGCTTCGG-AAAGAACAAGCT-GATTAGATCTTCTTCGAAACG 481 ||||||||||||||||| ||||||| ||| ||||||| | ||||||||||||||||||| Sbjct 418 TCTGCTTGTCTCTACCTAGCTTCGGGAAA-AACAAGCCAG-TTAGATCTTCTTCGAAACG 475 Query 482 CCAAAATTCTATGGAGAA-GAAGATGATCAGAGCTTCTTCCTTCACGGGATCAACTGTTT 540 |||| |||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 476 CCAAGATTCGATGG-GAAAGAAGATGATTAGAGCTTCTTCCTTCACGGGATCAACTGTTT 534 Query 541 CTGTACGCGCCTCGCTAGAGAAATTCGAATGCGGTTCTTGGGCATCGACGACAGCTCTTA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 535 CTGTACGCGCCTCGCTAGAGAAATTCGAATGCGGTTCTTGGGCATCGACGACAGCTCTGA 594 Query 601 TTCAAGATAACGGTCGGTTGTTTTTCGATTTTCCGGTTGAGATGACGAAGTGCAACAGCC 660 ||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||| Sbjct 595 TTCAAGATAACGGTCGGTTGTTTTTCGATCTTCCGATGGAGATGACGAAATGCAACAGCC 654 Query 661 GCGGTGGAAATGGAGGAAGAGATGTGCAAGAACCGGTGACCTCTGGTTTCTTATTCGATA 720 |||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||| Sbjct 655 GCGGTGGAAACGGAGGAAGAGATGTGCAAGAACCGGTGACTTCCGGATTCTTGTTCGATA 714 Query 721 GAGAAACAGAGACTTTGGCTCTGAGAAGCGTTTTAAAGACGAGGAGTACTCGTGATCACC 780 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 715 GAGAAACAGAGACTTTGGCTCTTAGAAGCGTTTTAAAGACGAGGAGTACTCGAGATCACC 774 Query 781 GGAGATCAGCTGAGTCTTCACCGCAACGTCGTGTTAGGTTCTCGACTTCGTCTTCATCGG 840 || ||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||| Sbjct 775 GGCGATCAGCTGAGACTTCACCGCAACGTCGTGTAAGATTCTCGACTTCGTCTGCATCGG 834 Query 841 CTTCAGTTTCGTGCCCTACTTCGCCTCGAACTTGTATCACTCCACGTTTGCGTAAGGCTA 900 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 835 CTTCAGTTTCGTGCCCTACTTCGCCGCGAACTTGTATCACTCCACGTTTGCGTAAGGCTA 894 Query 901 GAGATGACTTCAACACCTTCTTGACCGCACAAAACGCTTGAATAAGGAAAACAAAAACAG 960 ||||||||||||| |||||||| |||||||||||| |||||||||||||| ||||||||| Sbjct 895 GAGATGACTTCAATACCTTCTTAACCGCACAAAACTCTTGAATAAGGAAACCAAAAACAG 954 Query 961 A 961 | Sbjct 955 A 955 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45480639981 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5