BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30850.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922170 jgi|Araly1|922170|scaffold_103451.1 1365 0.0
> Ahg922170 jgi|Araly1|922170|scaffold_103451.1
Length=955
Score = 1365 bits (739), Expect = 0.0
Identities = 890/961 (93%), Gaps = 17/961 (2%)
Strand=Plus/Plus
Query 12 ttttttttttCGTTGACAAATCTAGTTATGCCTCCTCCGGCAATGCTTGCGTTTGACGAT 71
|||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TTTTTTTTCCCGTTGAC-AATCTAGTTATGCCTCCTCCGGCAATGCTTACGTTTGACGAT 59
Query 72 GGTTTAGCCCGGAAATCTAACGATAATGAGTGGCAAGGTTTCAGAGTTTTTCCAGGAG-- 129
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 60 GGTTTAGCCCGGAAATCTAACGACAATGAGTGGCAAGGTTTCAGAGTTTTTCCCGGAGAA 119
Query 130 -A-AAATA--CTAACCCTAACCCTAATATAAATTTCTTGGTTAAGAAGGCAATTCTGCAG 185
| ||| | |||||||| ||||| || | |||||||||||||||||||||||||||||
Sbjct 120 AACAAAAACCCTAACCCTTACCCTGATTTCAATTTCTTGGTTAAGAAGGCAATTCTGCAT 179
Query 186 AACGAGAAATCAATCACTCCTCTTTTCTCCCGTTCGTCGGCAAGAGATGATAGCTTC-AG 244
| ||||||||||| || |||||||||||||||||| ||| ||||||| ||||||||| ||
Sbjct 180 AGCGAGAAATCAACCAATCCTCTTTTCTCCCGTTCTTCGACAAGAGACGATAGCTTCAAG 239
Query 245 AATTGTGTTGCCGCCGGCGTTGCCTCCTCCTAGAGACTCCACCGTTCCGCTTCCTATGCT 304
|||||||||||||| ||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 240 -ATTGTGTTGCCGCCTGCGATGCCTCCTCCTAGAGACTCCGCAGTTCCGCTTCCTATGCT 298
Query 305 TCCGGAGCCGATGAGAGTCCGGAAGAAGCTTAGCCACCAAGAATCAGTCATATTTATGA- 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CCCGGAGCCGATGAGAGTCCGGAAGAAGCTTAGCCACCAAGAATCAGTCATATTTATGAC 358
Query 364 GCAAATCGCGTTTCGCAGAGAAAATCCTCTACAAGGAAGAAGATTTCAAATGTAACGCCT 423
| |||||||||| | ||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 359 G-AAATCGCGTTACTCAGAGAAGATTCTCTACAAGAAAGAAGATTTCAAATGTAACGCCT 417
Query 424 TCTGCTTGTCTCTACCTGGCTTCGG-AAAGAACAAGCT-GATTAGATCTTCTTCGAAACG 481
||||||||||||||||| ||||||| ||| ||||||| | |||||||||||||||||||
Sbjct 418 TCTGCTTGTCTCTACCTAGCTTCGGGAAA-AACAAGCCAG-TTAGATCTTCTTCGAAACG 475
Query 482 CCAAAATTCTATGGAGAA-GAAGATGATCAGAGCTTCTTCCTTCACGGGATCAACTGTTT 540
|||| |||| |||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 476 CCAAGATTCGATGG-GAAAGAAGATGATTAGAGCTTCTTCCTTCACGGGATCAACTGTTT 534
Query 541 CTGTACGCGCCTCGCTAGAGAAATTCGAATGCGGTTCTTGGGCATCGACGACAGCTCTTA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 535 CTGTACGCGCCTCGCTAGAGAAATTCGAATGCGGTTCTTGGGCATCGACGACAGCTCTGA 594
Query 601 TTCAAGATAACGGTCGGTTGTTTTTCGATTTTCCGGTTGAGATGACGAAGTGCAACAGCC 660
||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||
Sbjct 595 TTCAAGATAACGGTCGGTTGTTTTTCGATCTTCCGATGGAGATGACGAAATGCAACAGCC 654
Query 661 GCGGTGGAAATGGAGGAAGAGATGTGCAAGAACCGGTGACCTCTGGTTTCTTATTCGATA 720
|||||||||| ||||||||||||||||||||||||||||| || || ||||| |||||||
Sbjct 655 GCGGTGGAAACGGAGGAAGAGATGTGCAAGAACCGGTGACTTCCGGATTCTTGTTCGATA 714
Query 721 GAGAAACAGAGACTTTGGCTCTGAGAAGCGTTTTAAAGACGAGGAGTACTCGTGATCACC 780
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 715 GAGAAACAGAGACTTTGGCTCTTAGAAGCGTTTTAAAGACGAGGAGTACTCGAGATCACC 774
Query 781 GGAGATCAGCTGAGTCTTCACCGCAACGTCGTGTTAGGTTCTCGACTTCGTCTTCATCGG 840
|| ||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 775 GGCGATCAGCTGAGACTTCACCGCAACGTCGTGTAAGATTCTCGACTTCGTCTGCATCGG 834
Query 841 CTTCAGTTTCGTGCCCTACTTCGCCTCGAACTTGTATCACTCCACGTTTGCGTAAGGCTA 900
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 835 CTTCAGTTTCGTGCCCTACTTCGCCGCGAACTTGTATCACTCCACGTTTGCGTAAGGCTA 894
Query 901 GAGATGACTTCAACACCTTCTTGACCGCACAAAACGCTTGAATAAGGAAAACAAAAACAG 960
||||||||||||| |||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 895 GAGATGACTTCAATACCTTCTTAACCGCACAAAACTCTTGAATAAGGAAACCAAAAACAG 954
Query 961 A 961
|
Sbjct 955 A 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5