BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30860.1
Length=2624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473328 jgi|Araly1|473328|fgenesh2_kg.1__3282__AT1G30860.1 3258 0.0
> Ahg473328 jgi|Araly1|473328|fgenesh2_kg.1__3282__AT1G30860.1
Length=2552
Score = 3258 bits (1764), Expect = 0.0
Identities = 2255/2486 (91%), Gaps = 57/2486 (2%)
Strand=Plus/Plus
Query 162 AAAACAGAGTTGTCCTCTAACTTCTTTCGATCGATTCAAAAACTCTAATGATTATTTGAT 221
||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct 98 AAAACAGAGTTGTCCTCTAACTTCTTTCGATCGCTTC-AAAACTCTAATGGGCATTTGAG 156
Query 222 TTTATGTTCG-TTTGTTCGATTCTTAGATCG-TaaaaaaaTGGTGTCTTCTCCTCAGAGA 279
||| |||||| ||| |||||||||||||| | ||||||||||| ||| | | |||| |||
Sbjct 157 TTTGTGTTCGATTT-TTCGATTCTTAGATTGTTAAAAAAATGGCGTC-T-T-CTCAAAGA 212
Query 280 TTCGGTTTAATCTTAAGAGATCGTAACCAAAACGCTGGCGTTTTTCAAAAGAATCTGAAA 339
||||||||| |||||||||||||||| |||||||||||||||| || | ||||||||||
Sbjct 213 TTCGGTTTAGTCTTAAGAGATCGTAATCAAAACGCTGGCGTTTACCAGACGAATCTGAAA 272
Query 340 TCTCCGGTGAAAGAGGTTTTGAAATCTCATGTCTCCGATGAGAATTTAGTTGATTCTTGG 399
|||||||||||||||||||| |||| ||||||||||||||||||||| || |||||||||
Sbjct 273 TCTCCGGTGAAAGAGGTTTTCAAATTTCATGTCTCCGATGAGAATTTGGTCGATTCTTGG 332
Query 400 ATCGAAACTCACAATAACAAGAACAATCGTGTTCTTGAATCTCC-GTTAGAATCGAAGAG 458
||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 333 ATCGAGACTCACAATAACAAGAACAATCGTGTTCTTGAATCTCCAG-TAGAATCGAAGAG 391
Query 459 AAACGACAAT-CTTGTGGCTTCTTCTTTGGTTCAGATATGGGAGGCGAGGCTAAACCGAT 517
||| || | | | || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 392 AAATGATAGTCCCGGT-GCTTCTTCTCTGGTTCAGATATGGGAGGCGAGGCTAAACCGAT 450
Query 518 CCAACGGTGGAAACTCGCCGAGTAGCAGTCAATCTACGGCGAGTAGTAGTAGTCGGAGCG 577
||||||| |||||||||||||| ||| | ||||| || | | | ||||||||||||||||
Sbjct 451 CCAACGGCGGAAACTCGCCGAGCAGCTGCCAATCGAC-G-GTG-AGTAGTAGTCGGAGCG 507
Query 578 ATTCAGGAGTTAGTGTTCAAG-ATTCCGGTCTTTCAGAATCTTCATCAATCGATGGAGAT 636
| |||||| | |||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 508 AGTCAGGACTCGGTGTTC-AGAATTCCGGTCTTTCAGAATCTTCATCAATCGACGGAGAT 566
Query 637 TCTGAAATTGCTGATCGAACGGTGGAGATTGAATCTAGGTCACATGGTTTGGTTTCTGAT 696
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TCTGAATTTGTTGATCGAACGGTGGAGATTGAATCTAGGTCACATGGTTTGGTTTCTGAT 626
Query 697 TCCGGAGAAAGTAAATGGGGACGAGTCGCTGACCTAATTCGGAGGCTTAGCAACGAAGAC 756
|| ||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 627 TCTGGAGAGAGCAAATGGGGACGAGTCGCTGACTTAATTCGGAGACTTAGCAACGAAGAG 686
Query 757 AAGAAACGAACCGCTGGAGATAATGGCAGCGGCGGTGGCGGTGGACTCGA-GATTATCAG 815
||||||| |||||| ||||||||||||||||| ||||||||||||||| | |||| ||||
Sbjct 687 AAGAAACTAACCGCCGGAGATAATGGCAGCGGTGGTGGCGGTGGACTC-ACGATTGTCAG 745
Query 816 AACGCCGAGGCCTTATTGCACTTCGTCGTCATCGGAGAAAAGTAATTTTCCGGTGGTTAG 875
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 746 AACGCCGAGGCCTTGTTGCACTTCGTCGTCGTCGGAGAAAAGTAATTTTCCGGTGGTTAG 805
Query 876 TTTCTCTCCGAAGATACGAGGACGACAAGCGTTTACCGATTTTCTTATGCAAATGGAACG 935
||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 806 TTTCTCTCCGAGGATTCGAGGACGGCAAGCGTTTACCGATTTGCTTATGCAAATGGAACG 865
Query 936 TGATCGCCACCGTGAATTGGATTCGCTTTTTGAACGCAACGCAGTTTCTAGGTTTACTCA 995
||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 866 CGATCGCCACCGCGAATTGGATTGGCTTCTTGACCGCAACGCAGTTTCTAGGTTTACTCA 925
Query 996 ACGTGGTCGTCTCCAGTCAATGCTAAGGTTAAGGAACCTCAATCGCTGTCTTGTGATTCA 1055
|||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||||
Sbjct 926 ACGTGGTCGTCTCCAGTCAATGCTAAAGCTAAGGAACCTCAATAGCTGTCTTGCGATTCA 985
Query 1056 AGATAGAAACCGGTCTAACGCAAAAACAACCGGATTAAACCGAATTGAATCAGGCTCTGC 1115
||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 986 AGATAGAAACCGGTCTAACGCAAAAACAACCGGATCAAACCGAATCGGATCAGGCTCTGC 1045
Query 1116 TGTTCTGCATTTAAGGGAGAAATTTCATGCGAACGTAGTAAACTCTGCGGCTGCAACAGA 1175
||||||||||||||||||||| || | | | | |||||| ||||||||||| ||||
Sbjct 1046 AGTTCTGCATTTAAGGGAGAAA-TT--T-C--A--T-GTAAACGCTGCGGCTGCAGCAGA 1096
Query 1176 TAAGAGGAAGAATCATCAACGATCCACTGAGATGA-ACAACAAATCCGTAGAAGAAACAG 1234
||| ||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||
Sbjct 1097 TAAAAGGAAGAATCATCAACGATCCGCTGAGAT-ATATAACAAATCCGTAGAAGAAACAG 1155
Query 1235 AAGGAACTACTACCACAAGCACGAGGTTAAAGGATGGTGGTGTTACTCTCGAAGCTTTTT 1294
||||||||||||||||||||| |||||| ||| | || ||| ||||||||||||||||||
Sbjct 1156 AAGGAACTACTACCACAAGCATGAGGTTGAAGAACGGCGGTCTTACTCTCGAAGCTTTTT 1215
Query 1295 TCGCAGAGCGGTTGAGACCCCGTAACCGCAAGATAGAGGAAGCAACGTTATGTAAGGAAG 1354
|||||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1216 TCGCAGAGCGTTTGAGAGTCCGTAACCGCAAGATAGAGGAAGCAACCTTATCTAAGGAAG 1275
Query 1355 AAGAATCTGTAAGTGGAACAGTTGATTCACAAAA-GAATTGCCTTCAGCTGcaagaaaca 1413
||||| | |||||||||| ||||| ||| |||| ||| |||||||||||||||||||||
Sbjct 1276 AAGAAACAGTAAGTGGAAGTGTTGAATCA-AAAACGAAATGCCTTCAGCTGCAAGAAACA 1334
Query 1414 agagaagtagaagaaacttgcaacgatggcaagtctgaaaagaaagaagaagaaaaTACT 1473
| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||
Sbjct 1335 AAAGAAGTAGAAGAAACTTGCAATGATGGCGAGTCTGAGAAGAAAGAAGAAGAAAAGACA 1394
Query 1474 AGCCCGAGTGAATATTT-ATCTCGAGAATCGCGGTTGAGACAGAATCAAGACGAGAACAA 1532
|||||||| | || ||| | ||| |||||||||||||||||||||||||| |||||||||
Sbjct 1395 AGCCCGAGCGGATGTTTGA-CTCAAGAATCGCGGTTGAGACAGAATCAAGGCGAGAACAA 1453
Query 1533 TGTGGGAAAGTATATGCAAGAAACTCGAGAAACAGAAGGTCTAGTTCATGAGAGTAATGA 1592
||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1454 TGTGGAAAAGTATATGCAAGAAACTCGAGAAACAGAAGGTCTGGTTCATGATAGTAATGA 1513
Query 1593 GATGGACCAGTGCCTTGATCAACAAGAAACATCCTATTTGAATAGATGGGGAGAACAAGA 1652
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1514 GATGGACCAGTGCCTTGATCAACAAGAAACGTCATATTTGAATAGATGGGGAGAACAAGA 1573
Query 1653 AGAGTATGCAGATGAGCAGTCTTATTATGGAGAATATAACGACGACTGGCTTAGTGAAAT 1712
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1574 AGAGTATGAAGATGAGCAGTCTTATTATGGAGAACCGAATGACGACTGGCTTAGTGAAAT 1633
Query 1713 AGCTAGGCCTCGGAGTTACTGGGAGGAATTGAGGAAGTCACGGTACCTGGAAGTAATGAA 1772
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 ATCTAGGCCTCGGAGTTACTGGGAGGAATTGAGGAAGTCACGGTACCTGGAAGTAATGAA 1693
Query 1773 CACTAGGTCTGAGAAAGATGACATATGCAGACTCCTTGAGCGAAGAACGGTGACAGATTT 1832
|||| ||||||||| ||| |||||| |||||||||||||||| ||||| |||||||||||
Sbjct 1694 CACTCGGTCTGAGAGAGAGGACATACGCAGACTCCTTGAGCGGAGAACTGTGACAGATTT 1753
Query 1833 CCTCGACAGCGGGTTGCGAGAGAAGATCGATAATCTCATGATGTCCCGTGTACAGACACA 1892
|| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1754 TCTGGAGAGCGGGTTGCGAGAGAAGATCGATAATCTCATGATGTCCCGCGTGCAGACACA 1813
Query 1893 CTCGGATAAGCACTCCAAAAAATGGGAATTGCAACAAGAAGAAGAGGAGGAAGTAAATTT 1952
|||| ||||||| || |||||||||||||||||||||| || ||||| | || |||
Sbjct 1814 CTCGAATAAGCATTCTGAAAAATGGGAATTGCAACAAGAGGATGAGGAAG-AG-AAA-AA 1870
Query 1953 TGAAATTGATGAAGAAATC--A-AAGAAGAGCCATTAAGAG-GAGGTGAAGAGCAAGATG 2008
||||| ||| |||||| || | ||||||||||||| || | ||| ||||||||||| |
Sbjct 1871 TGAAACTGAAGAAGAAGTCAAAGAAGAAGAGCCATT-AGCGAAAGGCGAAGAGCAAGACG 1929
Query 2009 ATAGAGATGACTTGAGCCAATCGTCGTCTTCACATATATCTGCATCGTCTCCTGCAGGAT 2068
|||||||||| ||||||||||| || |||||||| |||| ||||||||||||||||||||
Sbjct 1930 ATAGAGATGATTTGAGCCAATCTTCTTCTTCACAGATATTTGCATCGTCTCCTGCAGGAT 1989
Query 2069 CATGGAGTTCTCAAGACACTGATGTTACTTCCACTCCTGCCTTGGT-TGTTCAGAATCCT 2127
|||||||||||||||||||||| || ||||||||||||| ||| | |||||| ||||||
Sbjct 1990 CATGGAGTTCTCAAGACACTGACGTGACTTCCACTCCTGTCTT-ATCTGTTCACAATCCT 2048
Query 2128 CAGTCACCTGAAATGGAGCTGATAAGCGGTATGAGATCACAGATCCAACAGCTTCAGCAA 2187
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2049 CATTCACCTGAAATGGAGCTGATAAGCGGTATGAGATCACAAATCCAACAGCTTCAGCAA 2108
Query 2188 GAAATGTCAGTACTACGAGATTCTGTCAAAACGTGTTTAGATGCTAACGCGAGCTTGCAA 2247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2109 GAAATGTCAGTACTACGAGATTCTGTCAAAACGTGTTTAGATGCTAACGCGAGCTTACAA 2168
Query 2248 CACAAGGCTCACCAAGAAAACCCAATGAAACGAAAATGCTGCGTCTGCGACGAAACACAG 2307
|| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2169 CAGAAAGTTCACCGAGAAAACCCAATGAAACGAAAATGCTGCGTCTGCGACGAAACACAG 2228
Query 2308 GTCGAGGCGGTTTTGTACAGGTGTGGACATATGTGCATGTGCCTAAAATGTGCCAACGAA 2367
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2229 GTCGAGGCGGTTTTGTATAGGTGCGGACATATGTGCATGTGCCTAAAATGTGCCAACGAA 2288
Query 2368 CTACATTGGAGTGGAGGGAAATGTCCGATTTGCAGAGCTCAGATTGTTGACGTTGTTCGT 2427
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 2289 CTACACTGGAGTGGAGGGAAATGTCCGATTTGCCGAGCTCAGATTGTGGACGTTGTTCGT 2348
Query 2428 GTCATCTACGATACAAGAAACTGAAATCAACCGTTTTGAAAACGCTGA-AGAATTCACTA 2486
||| ||| ||||||||| ||||||||| ||||||||| |||||||||| | ||||| |||
Sbjct 2349 GTCTTCTTCGATACAAGTAACTGAAATAAACCGTTTTAAAAACGCTGACA-AATTCTCTA 2407
Query 2487 ACCCATTA----A--AC-CC-TCTTTTC---CTTATCGAGTTTGCGTTATTTGGCGTTTT 2535
|||||||| | || || |||||| ||||||| |||||||||||||||||||||
Sbjct 2408 ACCCATTAGGCCATTACACCCTCTTTTTGTTCTTATCGCGTTTGCGTTATTTGGCGTTTT 2467
Query 2536 GGGTCTGAATATCGTATTATGCTCTCTTTATACAGTTTTTAGGTTATGTTACCAACACTT 2595
|| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2468 GGATCTGAATATCGTATTATGCTCTCTTTATACAGTATT-AGGTTATGTTACCAACATTT 2526
Query 2596 TGTCCAGTTTTATGAAGTTTTTGATC 2621
|||||||||||| |||| ||||||||
Sbjct 2527 TGTCCAGTTTTAAGAAGCTTTTGATC 2552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98958456510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5