BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30870.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473329 jgi|Araly1|473329|fgenesh2_kg.1__3283__AT1G30870.1 1661 0.0
> Ahg473329 jgi|Araly1|473329|fgenesh2_kg.1__3283__AT1G30870.1
Length=1169
Score = 1661 bits (899), Expect = 0.0
Identities = 1095/1187 (92%), Gaps = 23/1187 (2%)
Strand=Plus/Plus
Query 1 AAATTCATCAAAGCCAATCAAATTGAGAGAGATATCAAGAAAGCAAAATAATGAAGTTGG 60
||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1 AAAATCATCAAAGCCAATCAAATAGAGATAGATATCAAGAAAGCAAAATAATGAAGTTGG 60
Query 61 CCGTGGTCTCAGTCGTTGTCATACTCGGAG-TTCTCGTGGCTTGGCCGGTATCGGCTGGC 119
||||| |||||||||| ||| |||| || | |||||||||| ||||||||||||||| ||
Sbjct 61 CCGTGATCTCAGTCGTCGTCCTACT-GGTGATTCTCGTGGCCTGGCCGGTATCGGCTAGC 119
Query 120 CGAAAAGACTTACCTGGAGCGGGAGGATACGGAGGCGATGACGATGATGATACAAAGTCA 179
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGGAAAGACTTACCCCGATCGGGAGGATACGGAGGCGATGACGATGATGATACAAAGTCA 179
Query 180 TTGTTCCCTTTGGACAACCTATTATCGTTGAATTATTATGATAGGATTTGTCCAGATTTT 239
| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 TGGTTTCCTTTGGACAATCTATTATCGTTGAATTACTATGATAGGATTTGTCCAGATTTT 239
Query 240 GAGAAAATCGTTGTTACGAAAGTGAGGGAATGGACTAAGAGTGACTCTTCCCTTGGTCCC 299
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGAAAATCGTTGATAGGAAAGTGAGGGAATGGACTAAGAGTGACTCTTCCCTTGGTCCC 299
Query 300 GCCCTCCTCCGCCTTATCTTCCACGATTGTGGCGTCACGGGATGTGATGCGTCTGTTCTT 359
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 300 GCCCTCCTCCGCCTTATCTTCCACGACTGTGGTGTCACGGGATGTGATGCGTCTGTTCTT 359
Query 360 CTAGACTACGAAGGGACAGAGAGAAGATCTCCGGCTAGCAAAA-CACTAAGAGGCTTCGA 418
|||||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||
Sbjct 360 CTAGACTACGAAGGGACAGAGAGAAGATCTTCGGCGAGCAAAAGC-CTAAGAGGCTTCGA 418
Query 419 GCTAATTGACGATATCAAGTCCGAGATGGAGAAATCATGCCCCGGCA-AAGTATCCTGCG 477
|||||| |||||||||||||| |||||||||||||| |||||||| | ||| || ||||
Sbjct 419 GCTAATCGACGATATCAAGTCTGAGATGGAGAAATCTTGCCCCGG-ATTAGTCTCATGCG 477
Query 478 CCGACATCCTAACATCAGCCAGCCGTGCCGCCACCGTCCAACTTGGTGGTCCTTACTGGC 537
| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 478 CTGACATCCTAACATCAGCTAGTCGTGCTGCCACCGTCCAACTCGGTGGTCCTTACTGGC 537
Query 538 CCAACGTCTACGGTCGTCGTGACTCCAAACACTCTTACGCTAGAGACGTAGAGAAAGTCC 597
|||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 538 CCAACGTCTACGGTCGTCGTGATTCCAAAAACTCTTACGCTAGAGACGTTGAGAAAGTCC 597
Query 598 CTTCAGGCCGTCGTGATGTTACCGCCCTTCTCGAAACGTTTCAGTCATACGGTCTCAACG 657
|||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 598 CTTCAGGCCGCCGTGATGTTACCGCCCTTCTCGAAACGTCTCAGTCGTACGGTCTCAACA 657
Query 658 TCCTCGACCTAGTTGTCCTTTCCGGGGCCCACACCATCGGAAAAGCGTCCTGTGGCACCA 717
||||||||||||||||||| ||||| |||||||||||||||||||| | |||||| ||||
Sbjct 658 TCCTCGACCTAGTTGTCCTCTCCGGTGCCCACACCATCGGAAAAGCCTACTGTGGTACCA 717
Query 718 TCCAGTCGAGGCTTTACAACTACAACGCAACCAGTGGTTCAGATCCTTCGATTGACGCAA 777
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 718 TCCAGTCGAGGCTTTACAACTACAACGCAACCAATGGTTCAGATCCGTCGATTGACCCAA 777
Query 778 AATACGCTGATTACTTGCAACGCAGGTGTCGCTGGGCCTCTGAGACCGTCGATCTCGAC- 836
||||||| |||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 778 AATACGCAGATTACTTGCGACGCAGGTGTCGCTGGGCCTCTGAGACCGTTGAGCTCGACG 837
Query 837 CCTGTAACTCCAGCAGTGTTCGATAATCAGTACTACATTAATCTTCAGAAGCATATGGGA 896
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CC-GTAACTCCAGCAGTGTTCGATAATCAGTACTACATTAATCTTCAGAAGCATATGGGA 896
Query 897 GTTTTGTCGACTGATCAGGAGCTTGTTAAGGACCCAAGGACTGCTCCGCTTGTAAAGACT 956
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 897 GTTTTGTCGACTGATCAGGAGCTTGTTAAGGACCCAAGGACAGCTCCACTTGTAAAGGCT 956
Query 957 TTCGCAGAGCAATCACCTCAGATATTCAGACAGCAGTTTGCTGTGTCCATGGCTAAGCTG 1016
||||| |||||| |||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 957 TTCGCGGAGCAACCACCTCAGATGTTCAGACAACAGTTTGCTGTGTCAATGGCTAAGCTG 1016
Query 1017 GTCAACGTTGGAGTTCTCACTGGTGAAGATCGTGTCGGAGAGATCAGGAAGGTTTGCAGC 1076
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTCAATGTTGGTGTCCTCACTGGTGAAGATCGTGTCGGAGAGATCAGGAAGGTTTGCAGC 1076
Query 1077 AAATCTAACTCCAGAGCTTACTAAATTATAA-TCATCATCCCTCATGAGAAGGAtctttt 1135
|||||||||||||||||||||||| | |||| | || |||||||||||| | ||
Sbjct 1077 AAATCTAACTCCAGAGCTTACTAA-TAATAAAT-ATTATCCCTCATGAG-----T-TT-- 1126
Query 1136 gtttcttgaaataatttcttgtttggtttttgagctcttttctattg 1182
||| ||| | |||||||||||| |||||||||||||||||||||
Sbjct 1127 GTT----GAAGTCATTTCTTGTTTGATTTTTGAGCTCTTTTCTATTG 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5