BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30870.1 Length=1238 Score E Sequences producing significant alignments: (Bits) Value Ahg473329 jgi|Araly1|473329|fgenesh2_kg.1__3283__AT1G30870.1 1661 0.0 > Ahg473329 jgi|Araly1|473329|fgenesh2_kg.1__3283__AT1G30870.1 Length=1169 Score = 1661 bits (899), Expect = 0.0 Identities = 1095/1187 (92%), Gaps = 23/1187 (2%) Strand=Plus/Plus Query 1 AAATTCATCAAAGCCAATCAAATTGAGAGAGATATCAAGAAAGCAAAATAATGAAGTTGG 60 ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 1 AAAATCATCAAAGCCAATCAAATAGAGATAGATATCAAGAAAGCAAAATAATGAAGTTGG 60 Query 61 CCGTGGTCTCAGTCGTTGTCATACTCGGAG-TTCTCGTGGCTTGGCCGGTATCGGCTGGC 119 ||||| |||||||||| ||| |||| || | |||||||||| ||||||||||||||| || Sbjct 61 CCGTGATCTCAGTCGTCGTCCTACT-GGTGATTCTCGTGGCCTGGCCGGTATCGGCTAGC 119 Query 120 CGAAAAGACTTACCTGGAGCGGGAGGATACGGAGGCGATGACGATGATGATACAAAGTCA 179 || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CGGAAAGACTTACCCCGATCGGGAGGATACGGAGGCGATGACGATGATGATACAAAGTCA 179 Query 180 TTGTTCCCTTTGGACAACCTATTATCGTTGAATTATTATGATAGGATTTGTCCAGATTTT 239 | ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 180 TGGTTTCCTTTGGACAATCTATTATCGTTGAATTACTATGATAGGATTTGTCCAGATTTT 239 Query 240 GAGAAAATCGTTGTTACGAAAGTGAGGGAATGGACTAAGAGTGACTCTTCCCTTGGTCCC 299 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GAGAAAATCGTTGATAGGAAAGTGAGGGAATGGACTAAGAGTGACTCTTCCCTTGGTCCC 299 Query 300 GCCCTCCTCCGCCTTATCTTCCACGATTGTGGCGTCACGGGATGTGATGCGTCTGTTCTT 359 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 300 GCCCTCCTCCGCCTTATCTTCCACGACTGTGGTGTCACGGGATGTGATGCGTCTGTTCTT 359 Query 360 CTAGACTACGAAGGGACAGAGAGAAGATCTCCGGCTAGCAAAA-CACTAAGAGGCTTCGA 418 |||||||||||||||||||||||||||||| |||| ||||||| | |||||||||||||| Sbjct 360 CTAGACTACGAAGGGACAGAGAGAAGATCTTCGGCGAGCAAAAGC-CTAAGAGGCTTCGA 418 Query 419 GCTAATTGACGATATCAAGTCCGAGATGGAGAAATCATGCCCCGGCA-AAGTATCCTGCG 477 |||||| |||||||||||||| |||||||||||||| |||||||| | ||| || |||| Sbjct 419 GCTAATCGACGATATCAAGTCTGAGATGGAGAAATCTTGCCCCGG-ATTAGTCTCATGCG 477 Query 478 CCGACATCCTAACATCAGCCAGCCGTGCCGCCACCGTCCAACTTGGTGGTCCTTACTGGC 537 | ||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||| Sbjct 478 CTGACATCCTAACATCAGCTAGTCGTGCTGCCACCGTCCAACTCGGTGGTCCTTACTGGC 537 Query 538 CCAACGTCTACGGTCGTCGTGACTCCAAACACTCTTACGCTAGAGACGTAGAGAAAGTCC 597 |||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| Sbjct 538 CCAACGTCTACGGTCGTCGTGATTCCAAAAACTCTTACGCTAGAGACGTTGAGAAAGTCC 597 Query 598 CTTCAGGCCGTCGTGATGTTACCGCCCTTCTCGAAACGTTTCAGTCATACGGTCTCAACG 657 |||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 598 CTTCAGGCCGCCGTGATGTTACCGCCCTTCTCGAAACGTCTCAGTCGTACGGTCTCAACA 657 Query 658 TCCTCGACCTAGTTGTCCTTTCCGGGGCCCACACCATCGGAAAAGCGTCCTGTGGCACCA 717 ||||||||||||||||||| ||||| |||||||||||||||||||| | |||||| |||| Sbjct 658 TCCTCGACCTAGTTGTCCTCTCCGGTGCCCACACCATCGGAAAAGCCTACTGTGGTACCA 717 Query 718 TCCAGTCGAGGCTTTACAACTACAACGCAACCAGTGGTTCAGATCCTTCGATTGACGCAA 777 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| Sbjct 718 TCCAGTCGAGGCTTTACAACTACAACGCAACCAATGGTTCAGATCCGTCGATTGACCCAA 777 Query 778 AATACGCTGATTACTTGCAACGCAGGTGTCGCTGGGCCTCTGAGACCGTCGATCTCGAC- 836 ||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 778 AATACGCAGATTACTTGCGACGCAGGTGTCGCTGGGCCTCTGAGACCGTTGAGCTCGACG 837 Query 837 CCTGTAACTCCAGCAGTGTTCGATAATCAGTACTACATTAATCTTCAGAAGCATATGGGA 896 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 CC-GTAACTCCAGCAGTGTTCGATAATCAGTACTACATTAATCTTCAGAAGCATATGGGA 896 Query 897 GTTTTGTCGACTGATCAGGAGCTTGTTAAGGACCCAAGGACTGCTCCGCTTGTAAAGACT 956 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || Sbjct 897 GTTTTGTCGACTGATCAGGAGCTTGTTAAGGACCCAAGGACAGCTCCACTTGTAAAGGCT 956 Query 957 TTCGCAGAGCAATCACCTCAGATATTCAGACAGCAGTTTGCTGTGTCCATGGCTAAGCTG 1016 ||||| |||||| |||||||||| |||||||| |||||||||||||| |||||||||||| Sbjct 957 TTCGCGGAGCAACCACCTCAGATGTTCAGACAACAGTTTGCTGTGTCAATGGCTAAGCTG 1016 Query 1017 GTCAACGTTGGAGTTCTCACTGGTGAAGATCGTGTCGGAGAGATCAGGAAGGTTTGCAGC 1076 ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 GTCAATGTTGGTGTCCTCACTGGTGAAGATCGTGTCGGAGAGATCAGGAAGGTTTGCAGC 1076 Query 1077 AAATCTAACTCCAGAGCTTACTAAATTATAA-TCATCATCCCTCATGAGAAGGAtctttt 1135 |||||||||||||||||||||||| | |||| | || |||||||||||| | || Sbjct 1077 AAATCTAACTCCAGAGCTTACTAA-TAATAAAT-ATTATCCCTCATGAG-----T-TT-- 1126 Query 1136 gtttcttgaaataatttcttgtttggtttttgagctcttttctattg 1182 ||| ||| | |||||||||||| ||||||||||||||||||||| Sbjct 1127 GTT----GAAGTCATTTCTTGTTTGATTTTTGAGCTCTTTTCTATTG 1169 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46243098321 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5