BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30880.1
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473330 jgi|Araly1|473330|fgenesh2_kg.1__3284__AT1G30880.1 726 0.0
> Ahg473330 jgi|Araly1|473330|fgenesh2_kg.1__3284__AT1G30880.1
Length=534
Score = 726 bits (393), Expect = 0.0
Identities = 507/556 (91%), Gaps = 32/556 (6%)
Strand=Plus/Plus
Query 65 CAACAATGGCGAAATCAATGAGATGCAAGAGGGTGAAGAGATTGAGAGCAATAAGAAGAG 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 7 CAACAATGGCGAAATCAATGAGATGCAAGAGAGTGAAGAGATTGAGAGCAATAAGAAGAG 66
Query 125 AAATAGTGGAGAAGGAATCATTCACTCTAACGAGAGAAGACGCCAAATCCGCCGCTATTG 184
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 67 AAATAGTGGAGAAGGAATCATTCACTTTAACGAGAGAAGACGCCAAATCCGCCGCTATCG 126
Query 185 AAGCCGCACTCGCTGCTCCGAAGTTACCAGTTCGTCAAGCC-CCAGTTTCTCCGTTTATG 243
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 127 AAGCCGCACTCGCTGCTCCGAAGTTACCAGTTCGTCAA-CCTCCAGTTTCTCCGTTTATG 185
Query 244 GAAGTTGCGACGCCTTCCTCTGAGTCTGCATCTGCCTCCACTACAATCGCCAACGATAGT 303
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 186 GAAGTTGCGACGCCGTCCTCTGAGTCTGCATCTGCCTCCACTACAATCGCCAACGATA-T 244
Query 304 G-ATGAGGAAATGGATGATGAGAAGAAAAACAAGTCGCTAAAACCTATTGGGAAGAAGTT 362
| ||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 245 GGATGTGGAAATGGATGATGAGAAGAAAACCAAGTTGCTTAAACCTATTGGGAAGAAGTT 304
Query 363 GAAGAAGAAGTTTAAGCTGGGGATGAAGAATCGTCGTAGTAAGGGTGTCCTTCGAGGCAA 422
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 305 GAAGAAGAAGTTTAAGCTGGGGATGAAGAATCGCCGCAGTAAGGGTGTCCTTCGAGGCAA 364
Query 423 ACGAAACTAAAACTGGTCTTGGCTTTCTTCTACTGGGTTTGTTTTCTACTTGCATAATTT 482
||||||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct 365 ACGAAACTAAA-CGGGTCTTGGCTTTCTACTACTGG-TTTGTTT-CTACTTGCATAATTG 421
Query 483 ATGTTCTCTCTTAATTTTGGGGTTCTTCAATGTCTTAGAATATAGCATCTTTTGTACTGT 542
||||| || ||| | || | || | | | |||| |||||||||||||||
Sbjct 422 G-GTTCT-TC--AAT---G---TT-T--AA-G----A-A-TATATCATCTTTTGTACTGT 461
Query 543 GTTTTTTCCATGAGTTTCAGTACT-ATAGAAACCCTAAAAACGTGATCG-CGTCTGAATT 600
||||||| ||||||||||||| || |||||||||||||||||||||| | ||||||| ||
Sbjct 462 GTTTTTTTCATGAGTTTCAGT-CTTATAGAAACCCTAAAAACGTGAT-GTCGTCTGA-TT 518
Query 601 GTGTCTCCCATCTTTC 616
||| ||||||||||||
Sbjct 519 GTGCCTCCCATCTTTC 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22530643947
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5