BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30890.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473331 jgi|Araly1|473331|fgenesh2_kg.1__3285__AT1G30890.1 1639 0.0
> Ahg473331 jgi|Araly1|473331|fgenesh2_kg.1__3285__AT1G30890.1
Length=1038
Score = 1639 bits (887), Expect = 0.0
Identities = 990/1040 (95%), Gaps = 5/1040 (0%)
Strand=Plus/Plus
Query 1 ACTGTTTGATTTCTGAGG-AGAATCCATTGTTTCCATTTGAAGAAAACTCTAACTTTCTC 59
|||||||||||||||||| |||||| |||||||||||| ||||||| ||||||| |||||
Sbjct 1 ACTGTTTGATTTCTGAGGAAGAATCTATTGTTTCCATTAGAAGAAAGCTCTAACATTCTC 60
Query 60 GTTGAAGCTTTGAGCTCTCTACCTCTTTATCTCCG--GAGATGTATAATAACATGGGACC 117
|| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 61 GTCGAAGCTTTGAG--CTCTACCTCTTCATCTCCGCAGAGATGTATAATAACATGGGACC 118
Query 118 TCAACCGGGGATGCCAAGACCTCCAGGAAACCCTGAGCCTGGTCCATTTGGTAATCCTTT 177
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 119 TCAACCGGGGATGCCAAGACCTCCAGGAAACCCTGAGCCTGGTCCGTTTGGAAATCCATT 178
Query 178 CACTGGAGCTGGCTCGGGTTTTATCCGTGGTGGTTTGGGAGCGTATGGGGAGAGAATTTT 237
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 CACTGGAGCTGGCTCGGGATTTATCCGTGGTGGTTTGGGAGCGTACGGGGAGAGAATTTT 238
Query 238 AGGATCGAGCTCTGAGTATGTTCAGAGCAATATAAGCCGGTACTTCTCTGATCCGCAATA 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGGATCAAGCTCTGAGTATGTTCAGAGCAATATAAGCCGGTACTTCTCTGATCCGCAATA 298
Query 298 CTATTTCCAAGTGAATGATCAATATGTGAGGAATAAACTGAAGGTTGTTCTGTTTCCTTT 357
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 299 CTATTTCCAAGTGAATGATCAATATGTGAGGAACAAACTGAAGGTTGTCCTGTTTCCTTT 358
Query 358 CCTACACCGGGGACACTGGACCAGAATATCTGAACCAGTTGGTGGTAGGCTCTCATACAA 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCTACACCGGGGACATTGGACCAGAATATCTGAACCAGTTGGTGGTAGGCTCTCATACAA 418
Query 418 GCCTCCAATATATGATATCAATGCTCCAGACTTGTACATTCCCTTTATGGCATTTGGTAC 477
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 GCCTCCGATCTATGATATCAATGCTCCAGACTTGTACATTCCGTTTATGGCATTTGGTAC 478
Query 478 CTACGTTGTTCTTGCTGGTCTTTCATTGGGACTTAATGGAAAGTTTACACCGGAAGCTTT 537
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 479 CTACGTTGTTCTTGCTGGCCTTTCATTGGGACTTAATGGAAAGTTTACGCCAGAAGCTTT 538
Query 538 GAATTGGCTGTTTGTGAAAGGATTGGTTGGTTGGTTTTTGCAAGTAATGCTCCTGAAAGT 597
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 539 GAATTGGTTGTTTGTGAAAGGATTGGTTGGTTGGTTTTTGCAAGTGATGCTCCTGAAAGT 598
Query 598 AACACTTCTATCACTTGGTAGTGGAGAGGCACCATTACTAGATATTGTGGCATACGGAGG 657
||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||
Sbjct 599 AACACTTCTATCACTTGGTAGCGGAGAGGCGCCTTTACTAGACATTGTGGCATACGGAGG 658
Query 658 GTATGCTTTTGCTGGTCTGTGTCTTGCGGGCTTTGCCAAAATAATGTGGGGATACTCGTA 717
|| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 659 CTACGCTTTTGCTGGTCTATGTCTTGCGGGTTTTGCCAAGATAATGTGGGGATACTCGTA 718
Query 718 CTACGCGTTGATGCCATGGACTTGTCTATGCACTGGGATTTTCTTGGTGAAGACGATGAA 777
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTACGCCTTGATGCCGTGGACTTGTCTATGCACTGGGATTTTCTTGGTGAAGACGATGAA 778
Query 778 ACGTGTTCTGTTTGCTGAAGTAAGAAGTTACGATTCGAGCAAACATCACTACCTTCTTCT 837
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 779 ACGCGTTCTGTTTGCTGAAGTAAGAAGTTATGATTCGAGCAAACATCACTACCTTCTGCT 838
Query 838 GTTTTTAGCCTTGGTCCAGTTCCCACTTTTGATATGGCTTGGTAACATTAGTGTTAATTG 897
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 839 GTTTTTAGCCTTGGTCCAGTTCCCTCTTTTGATATGGCTTGGGAACATTAGTGTTAATTG 898
Query 898 GCTTCTTTGAAATGAAAAAGACGTTTTTGTGAATTCTTATTGGTATTTGTAGCGTAATTT 957
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 899 GCTTCTTTGAAATGAAAAATACGTTTTTGTGAATTCTTATTGGTACTTGTAGCGTAATTT 958
Query 958 GAACGTTCTTGGCATTTGGCAATGTATGTTTGTTGTCTATTCTATTCATTTGCATGACGT 1017
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GAACATTCTTGGTATTTGGCAATGTATGTTTGTTGTCTATTCTATTCATTTGCATGACGT 1018
Query 1018 GAAGAAAAAGTTATTTTGAA 1037
||||||| ||| ||||||||
Sbjct 1019 GAAGAAAGAGTGATTTTGAA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5