BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30910.1
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473334 jgi|Araly1|473334|fgenesh2_kg.1__3288__AT1G30910.1 1718 0.0
Ahg943050 jgi|Araly1|943050|scaffold_603594.1 291 1e-77
> Ahg473334 jgi|Araly1|473334|fgenesh2_kg.1__3288__AT1G30910.1
Length=1089
Score = 1718 bits (930), Expect = 0.0
Identities = 1044/1098 (95%), Gaps = 11/1098 (1%)
Strand=Plus/Plus
Query 19 AAAAAGAAGAGATGGAGAATACTTTGTCGCCGTTGTTGTCACCGTCGCCGGCAAGTGAAG 78
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 1 AAAAAGAAGAGATGGAGAATGCTTTGTCGCCGTCGCTGTCACCGTCGCCGGCAAGTGAAG 60
Query 79 TCGCTGCGAGAGTATCGTCTTTGTTCGTTTATCCGATCAAATCATGTCGAGGAATTTCTC 138
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 61 TTGCTGCGAGAGTATCGTCTTTGTTCGTTTATCCGATCAAATCATGTAGAGGAATTTATT 120
Query 139 TGTCTCAGGCAGCTCTCACTCCCACCGGATTTCGATGGGATCGAAACTGGTTGATTGTGA 198
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTCTCAGGCAGCTCTCAGTCCCACCGGATTTCGATGGGATCGAAACTGGTTGATTGTGA 180
Query 199 ATTCTAAAGGAAGAGGATTGACTCAGAGAGTGGAACCAAAGCTTTCTTTGATTGAAGTAG 258
| ||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 181 ACTCTAAAGGACGAGGATTGACTCAAAGAGTGGAACCAAAGCTTGCCTTGATTGAAGTAG 240
Query 259 AAATGCCTAAGCATGCGTTTGGAGAGGACTGGGAGCCTGAGAAGAGCTCTAACATGGTGG 318
| |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 241 AGATGCCTGAGCATGCGTTTGGAGAAGACTGGGAGCCCGAGAAGAGCTCTAACATGGTGG 300
Query 319 TTAGAGCTCCTGGTATGGATGCCCTTAAGGTCTCCCTAGCTAAACCCGACAAAATAGCAG 378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTAGAGCTCCTGGTATGGATGCCCTTAAGGTCTCCTTAGCTAAACCCGACAAAATAGCAG 360
Query 379 ACGGTGTCTCAGTTTGGGAGTGGTCTGGCTCCGCACTAGATGAAGGAGAAGAAGCATCTC 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGGTGTCTCAGTTTGGGAGTGGTCTGGCTCCGCACTAGATGAAGGAGAAGAAGCATCTC 420
Query 439 AGTGGTTTACAAACTTTGTTGGGAAGCCTTGTCGACTTGTTCGTTTTAATTCAGCCTATG 498
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 421 AGTGGTTTACAAACTTTGTTGGGAAGCCTTGTCGACTTGTTCGTTTTGATTCAGCCTCTG 480
Query 499 AGACTAGGCCTGTGGATCCAAATTATGCTCCAGGTCACATTGCGATGTTCTCGGATATGT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGACTAGGCCTGTGGATCCAAATTATGCTCCAGGTCACATTGCGATGTTCTCGGATATGT 540
Query 559 ATCCATTCTTGCTTATATCACAGGGTTCGCTTGATTCCCTGAATAAGCTTCTCAAGGAGC 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCCATTCTTGCTTATATCACAGGGTTCGCTTGATTCCCTGAATAAGCTTCTCAAGGAGC 600
Query 619 CTGTACCGATCAACCGATTTAGACCCAACATCTTTGTTGATGGATGTGAACCATTTGCTG 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGTACCGATCAACCGATTTAGACCCAACATCTTTGTTGATGGATGTGAACCATTTGCTG 660
Query 679 AAGACTTATGGACAGAGATCCTTATAAACGGTTTCACCTTTCACGGTGTGAAATTATGCT 738
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 AAGATTTATGGACAGAGATCCTTATAAACGGTTTCACCTTTCACGGTGTGAAACTATGCT 720
Query 739 CTCGCTGCAAGGTACCTACGATTAGTCAAGAAACTGGTATTGGAGGTCAAGAGCCAATTG 798
| || ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 721 CCCGTTGCAAGGTACCGACGATTAATCAAGAAACTGGTATTGGAGGTCAAGAGCCGATTG 780
Query 799 AGACTTTGAGGACTTTCAGGTCAGACAAAGTTTTACAGCCAAAGAGTAAACCACACGGAA 858
||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 781 AGACTCTGAGGAATTTCAGGTCAGACAAAGTTTTACAGCCAAGGAGGAAACCACAGGGAA 840
Query 859 AGATATACTTTGGGCAGAACATGGTTTGGAAAGACGGATTCGGCGATGGAATTGGAAAAA 918
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 AGATATACTTTGGGCAGAACATGGTTTGGAAAGACGGATTCGGCGATGGAATAGGAAAAA 900
Query 919 CAATTGAAATTGGTGATTCCGTTGTTGTCCTTCGAAAACTCTCATCTCCTGCTGAAGCAG 978
|||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 901 CAATTGAAATTGGTGATTCCGTTGTTGTCCTTGGAAAACTCTCCTCTCCTGCTAAAGCAG 960
Query 979 CAACTTGAAAGAGACTTGCAGCTTGTTATA--TATATAATTGTGAATCTTCCACAAGAAC 1036
|||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 961 CAACTTGAAAGAGACTTGCAGCTTGTTATAAATATATAATTGTGAATCTTTCATGAGAAC 1020
Query 1037 TGTGACCACTTTTACCAGAACACCCCAAATCCACGTTTGACCCCCAATTGAAGCAACCAC 1096
|||||||||||||| |||| |||| | | | |||||||||||| |||||||||||
Sbjct 1021 TGTGACCACTTTTATCAGA-CACC--A---C-A--TTTGACCCCCAAAAGAAGCAACCAC 1071
Query 1097 ATCAAATATATTGATTTT 1114
|||||||||||| |||||
Sbjct 1072 ATCAAATATATTCATTTT 1089
> Ahg943050 jgi|Araly1|943050|scaffold_603594.1
Length=1415
Score = 291 bits (157), Expect = 1e-77
Identities = 236/271 (87%), Gaps = 17/271 (6%)
Strand=Plus/Plus
Query 313 TGGTGGTTAGAGCTCCTGGTATGGATGCCCTTAAGGTCTCCCTAGCTAAACCCGACAAAA 372
||| ||||||||| ||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 1112 TGG-GGTTAGAGCACCTGGTATGGATGCCCTTAAGGTTTCGTTAGCTAAACCGGACAAAA 1170
Query 373 TAGCAGACGGTGTCTCAGTTTGGGAGTGGTCTGGCTCCGCACTAGATGAAGGAGAAGAAG 432
||||| | ||||||||||||||||||||||||||||| || || || |||||||| ||||
Sbjct 1171 TAGCACATGGTGTCTCAGTTTGGGAGTGGTCTGGCTCTGCGCTTGACGAAGGAGATGAAG 1230
Query 433 CATCTCAGTGGTTTACAAACTTTGTTGGGAAGCCTTGTCGACTTGTTCGTTTTAATTCAG 492
||||||||||||||||| | ||| |||||||||||||||||||| || | | |||||
Sbjct 1231 CATCTCAGTGGTTTACAGATTTTTTTGGGAAGCCTTGTCGACTT-TT-G----A-TTCAG 1283
Query 493 CCTATGAGACTAGGCCTGTGGATCCAAATTATGCTCCAGGTCACATTGCGATGTTCTCGG 552
||| || | | |||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1284 ACTA-GA--C----C-TGTGGATCCAAATTATGCACCAGGTCACATTGCGATGTTCTCAG 1335
Query 553 ATATGTATCCATTCTTGCTT-ATATCACAGG 582
|||||||||||||||||||| ||||||||||
Sbjct 1336 ATATGTATCCATTCTTGCTTTATATCACAGG 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41782717032
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5