BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30910.1 Length=1121 Score E Sequences producing significant alignments: (Bits) Value Ahg473334 jgi|Araly1|473334|fgenesh2_kg.1__3288__AT1G30910.1 1718 0.0 Ahg943050 jgi|Araly1|943050|scaffold_603594.1 291 1e-77 > Ahg473334 jgi|Araly1|473334|fgenesh2_kg.1__3288__AT1G30910.1 Length=1089 Score = 1718 bits (930), Expect = 0.0 Identities = 1044/1098 (95%), Gaps = 11/1098 (1%) Strand=Plus/Plus Query 19 AAAAAGAAGAGATGGAGAATACTTTGTCGCCGTTGTTGTCACCGTCGCCGGCAAGTGAAG 78 |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| Sbjct 1 AAAAAGAAGAGATGGAGAATGCTTTGTCGCCGTCGCTGTCACCGTCGCCGGCAAGTGAAG 60 Query 79 TCGCTGCGAGAGTATCGTCTTTGTTCGTTTATCCGATCAAATCATGTCGAGGAATTTCTC 138 | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 61 TTGCTGCGAGAGTATCGTCTTTGTTCGTTTATCCGATCAAATCATGTAGAGGAATTTATT 120 Query 139 TGTCTCAGGCAGCTCTCACTCCCACCGGATTTCGATGGGATCGAAACTGGTTGATTGTGA 198 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGTCTCAGGCAGCTCTCAGTCCCACCGGATTTCGATGGGATCGAAACTGGTTGATTGTGA 180 Query 199 ATTCTAAAGGAAGAGGATTGACTCAGAGAGTGGAACCAAAGCTTTCTTTGATTGAAGTAG 258 | ||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||| Sbjct 181 ACTCTAAAGGACGAGGATTGACTCAAAGAGTGGAACCAAAGCTTGCCTTGATTGAAGTAG 240 Query 259 AAATGCCTAAGCATGCGTTTGGAGAGGACTGGGAGCCTGAGAAGAGCTCTAACATGGTGG 318 | |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 241 AGATGCCTGAGCATGCGTTTGGAGAAGACTGGGAGCCCGAGAAGAGCTCTAACATGGTGG 300 Query 319 TTAGAGCTCCTGGTATGGATGCCCTTAAGGTCTCCCTAGCTAAACCCGACAAAATAGCAG 378 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 TTAGAGCTCCTGGTATGGATGCCCTTAAGGTCTCCTTAGCTAAACCCGACAAAATAGCAG 360 Query 379 ACGGTGTCTCAGTTTGGGAGTGGTCTGGCTCCGCACTAGATGAAGGAGAAGAAGCATCTC 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACGGTGTCTCAGTTTGGGAGTGGTCTGGCTCCGCACTAGATGAAGGAGAAGAAGCATCTC 420 Query 439 AGTGGTTTACAAACTTTGTTGGGAAGCCTTGTCGACTTGTTCGTTTTAATTCAGCCTATG 498 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 421 AGTGGTTTACAAACTTTGTTGGGAAGCCTTGTCGACTTGTTCGTTTTGATTCAGCCTCTG 480 Query 499 AGACTAGGCCTGTGGATCCAAATTATGCTCCAGGTCACATTGCGATGTTCTCGGATATGT 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGACTAGGCCTGTGGATCCAAATTATGCTCCAGGTCACATTGCGATGTTCTCGGATATGT 540 Query 559 ATCCATTCTTGCTTATATCACAGGGTTCGCTTGATTCCCTGAATAAGCTTCTCAAGGAGC 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ATCCATTCTTGCTTATATCACAGGGTTCGCTTGATTCCCTGAATAAGCTTCTCAAGGAGC 600 Query 619 CTGTACCGATCAACCGATTTAGACCCAACATCTTTGTTGATGGATGTGAACCATTTGCTG 678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTGTACCGATCAACCGATTTAGACCCAACATCTTTGTTGATGGATGTGAACCATTTGCTG 660 Query 679 AAGACTTATGGACAGAGATCCTTATAAACGGTTTCACCTTTCACGGTGTGAAATTATGCT 738 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 661 AAGATTTATGGACAGAGATCCTTATAAACGGTTTCACCTTTCACGGTGTGAAACTATGCT 720 Query 739 CTCGCTGCAAGGTACCTACGATTAGTCAAGAAACTGGTATTGGAGGTCAAGAGCCAATTG 798 | || ||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| Sbjct 721 CCCGTTGCAAGGTACCGACGATTAATCAAGAAACTGGTATTGGAGGTCAAGAGCCGATTG 780 Query 799 AGACTTTGAGGACTTTCAGGTCAGACAAAGTTTTACAGCCAAAGAGTAAACCACACGGAA 858 ||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||| |||| Sbjct 781 AGACTCTGAGGAATTTCAGGTCAGACAAAGTTTTACAGCCAAGGAGGAAACCACAGGGAA 840 Query 859 AGATATACTTTGGGCAGAACATGGTTTGGAAAGACGGATTCGGCGATGGAATTGGAAAAA 918 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 841 AGATATACTTTGGGCAGAACATGGTTTGGAAAGACGGATTCGGCGATGGAATAGGAAAAA 900 Query 919 CAATTGAAATTGGTGATTCCGTTGTTGTCCTTCGAAAACTCTCATCTCCTGCTGAAGCAG 978 |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| Sbjct 901 CAATTGAAATTGGTGATTCCGTTGTTGTCCTTGGAAAACTCTCCTCTCCTGCTAAAGCAG 960 Query 979 CAACTTGAAAGAGACTTGCAGCTTGTTATA--TATATAATTGTGAATCTTCCACAAGAAC 1036 |||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| Sbjct 961 CAACTTGAAAGAGACTTGCAGCTTGTTATAAATATATAATTGTGAATCTTTCATGAGAAC 1020 Query 1037 TGTGACCACTTTTACCAGAACACCCCAAATCCACGTTTGACCCCCAATTGAAGCAACCAC 1096 |||||||||||||| |||| |||| | | | |||||||||||| ||||||||||| Sbjct 1021 TGTGACCACTTTTATCAGA-CACC--A---C-A--TTTGACCCCCAAAAGAAGCAACCAC 1071 Query 1097 ATCAAATATATTGATTTT 1114 |||||||||||| ||||| Sbjct 1072 ATCAAATATATTCATTTT 1089 > Ahg943050 jgi|Araly1|943050|scaffold_603594.1 Length=1415 Score = 291 bits (157), Expect = 1e-77 Identities = 236/271 (87%), Gaps = 17/271 (6%) Strand=Plus/Plus Query 313 TGGTGGTTAGAGCTCCTGGTATGGATGCCCTTAAGGTCTCCCTAGCTAAACCCGACAAAA 372 ||| ||||||||| ||||||||||||||||||||||| || |||||||||| ||||||| Sbjct 1112 TGG-GGTTAGAGCACCTGGTATGGATGCCCTTAAGGTTTCGTTAGCTAAACCGGACAAAA 1170 Query 373 TAGCAGACGGTGTCTCAGTTTGGGAGTGGTCTGGCTCCGCACTAGATGAAGGAGAAGAAG 432 ||||| | ||||||||||||||||||||||||||||| || || || |||||||| |||| Sbjct 1171 TAGCACATGGTGTCTCAGTTTGGGAGTGGTCTGGCTCTGCGCTTGACGAAGGAGATGAAG 1230 Query 433 CATCTCAGTGGTTTACAAACTTTGTTGGGAAGCCTTGTCGACTTGTTCGTTTTAATTCAG 492 ||||||||||||||||| | ||| |||||||||||||||||||| || | | ||||| Sbjct 1231 CATCTCAGTGGTTTACAGATTTTTTTGGGAAGCCTTGTCGACTT-TT-G----A-TTCAG 1283 Query 493 CCTATGAGACTAGGCCTGTGGATCCAAATTATGCTCCAGGTCACATTGCGATGTTCTCGG 552 ||| || | | |||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1284 ACTA-GA--C----C-TGTGGATCCAAATTATGCACCAGGTCACATTGCGATGTTCTCAG 1335 Query 553 ATATGTATCCATTCTTGCTT-ATATCACAGG 582 |||||||||||||||||||| |||||||||| Sbjct 1336 ATATGTATCCATTCTTGCTTTATATCACAGG 1366 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41782717032 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5