BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30925.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922179 jgi|Araly1|922179|scaffold_103460.1 824 0.0
Ahg336216 jgi|Araly1|336216|fgenesh1_pg.C_scaffold_1002781 508 3e-143
Ahg336203 jgi|Araly1|336203|fgenesh1_pg.C_scaffold_1002768 289 4e-77
Ahg922208 jgi|Araly1|922208|scaffold_103489.1 287 1e-76
Ahg338947 jgi|Araly1|338947|fgenesh1_pg.C_scaffold_2001046 265 6e-70
Ahg922218 jgi|Araly1|922218|scaffold_103499.1 263 2e-69
Ahg922296 jgi|Araly1|922296|scaffold_103577.1 215 6e-55
Ahg922192 jgi|Araly1|922192|scaffold_103473.1 178 8e-44
Ahg336202 jgi|Araly1|336202|fgenesh1_pg.C_scaffold_1002767 159 3e-38
Ahg336233 jgi|Araly1|336233|fgenesh1_pg.C_scaffold_1002798 154 1e-36
Ahg927913 jgi|Araly1|927913|scaffold_300370.1 119 5e-26
Ahg495332 jgi|Araly1|495332|fgenesh2_kg.8__1148__AT5G52620.1 67.6 2e-10
Ahg932652 jgi|Araly1|932652|scaffold_400640.1 56.5 4e-07
> Ahg922179 jgi|Araly1|922179|scaffold_103460.1
Length=2001
Score = 824 bits (446), Expect = 0.0
Identities = 553/605 (91%), Gaps = 6/605 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTATCCATCTGGTCCTGATGATCATAAAATTCTGACCTTGGGAACTAGAAGAATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 306 ATGGCTTATCCATCTGGTCCTGATGATCATAAAATTCTGACCTTGGGAACTCGAAAAATG 365
Query 61 AGGTGGAG-AAAGATCCATTGCCCCTTAACTCATGATCCTTTTTGTGAAGGGATATGCAT 119
|||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 366 AGGTGGAGGAAA-ATCCATTGTCCCTTAACTCATGATCCTTTTTGTGGAGGGATATGCAT 424
Query 120 CAATGGGGTTTTATATTACTTAGCTATCCAAATTGATGAACCCTTGGTTAACCA-AAGGT 178
|||||||||||| ||||||||||||||| ||| ||||||| |||||||||| | ||| |
Sbjct 425 CAATGGGGTTTTTTATTACTTAGCTATCAAAAGTGATGAAACCTTGGTTAAT-AGAAGAT 483
Query 179 CTTTTGTGATAGTTTGCTTTGATGTTAGATTTGAAAAATTCACGTTCATTGACGTAGATT 238
||| ||| |||||||||||||||||||||||||| ||||||| |||||| |||||||| |
Sbjct 484 CTTATGTCATAGTTTGCTTTGATGTTAGATTTGAGAAATTCAAGTTCATCGACGTAGAAT 543
Query 239 GCTTTTATCATTTGATAAATTATAAGGGAAAATTAGGTGGGATTGATTGGAAACATGGTA 298
||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||| ||
Sbjct 544 GCTTTTATCATTTAATAAATTATAAGGGAAAATTAGGCGGGATTAATTGGAATTATGCTA 603
Query 299 ACGCTAATGGAAGTCGTACCTTTGAGTTGAGTATGTGGGTTCTTGAGGATGTCGAGAAAC 358
|||| ||||||||||||||||||||||||| ||||||||||| || |||| ||||||||
Sbjct 604 GCGCTGATGGAAGTCGTACCTTTGAGTTGAGAATGTGGGTTCTAGATGATGCCGAGAAAC 663
Query 359 ATGAATGGTCGAAATACGACTGCACTTTTCTTGAGTATGAAGTCATGTTCTACAATATT- 417
|||||||||||| ||| |||| |||||||| || |||||||| | ||||||||||||
Sbjct 664 ATGAATGGTCGATATATGACTACACTTTTCCCGAACATGAAGTCTTTTTCTACAATATTG 723
Query 418 TCTCTTGCCGTTGGGATGACTGCTACATGTGAAATTGTTTTGTCGGAGAAGTTTGCATCT 477
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 724 T-TCTTGCCGTTGGGATGGCTGCTACATGTGAAATTGTTTTGTCGGAGAAGTTTACATCG 782
Query 478 AAATCGTTTTATGTCTTCTACTTCAATCCCGAAAGAGAAACTCTCCAAAGAGTTGAAATC 537
||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 783 AAACCGTTTTATGTCTTCTACTTCAATCCAGAAAGAGACACTCTCCAAAGAGTTGAAATC 842
Query 538 CAAGGATTGGAGAATCATTGTAGAGTTTACACTATTACAGACCATGTCGAGGATCTTAAT 597
||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||
Sbjct 843 CAAGGATTGGAGAATCACTGTAGAGTTTACACTATTGCAGACCATGTAGAGGATCTTAAT 902
Query 598 GTTAA 602
|||||
Sbjct 903 GTTAA 907
> Ahg336216 jgi|Araly1|336216|fgenesh1_pg.C_scaffold_1002781
Length=846
Score = 508 bits (275), Expect = 3e-143
Identities = 351/385 (91%), Gaps = 15/385 (4%)
Strand=Plus/Plus
Query 739 TCTACTACATTGATAAACTATAAGGGTAAAGTAGGTGTGATTAATTTGACGCATGCCTAT 798
||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 415 TCTTCTACATTGATAAACTATAAGGGTAAATTAGGTGTGATTAATTTGAGGCATGCCAAT 474
Query 799 GAACG-TGTATTTCCCCTTCAGTTACGTATGACGGTTCTAGAGGATTTTGAGAAACAGGA 857
| | | | ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 475 G-ATGTTATATTTCCCCTTCAGTTAAGTATGACGGTTCTAGAGGATTTCGAGAAACAGGA 533
Query 858 ATGGTCGACATATGTCTACACTTTGATGGCTGAGAATATAGTCGTT-A--AG------TA 908
|||||| ||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 534 ATGGTCAACATATGTCTACACTTTGATGGCTGAGAATATAGTCGTTAAGGAGAAACACTA 593
Query 909 TGTTTCCGTGGTTGGGATGACTGCTACAGGTGATATTGTTTTGGTGAA-AACAAATGCAT 967
||||||||| |||||| |||||||||||||||| |||||||||||||| || |||||||
Sbjct 594 TGTTTCCGTTGTTGGGGTGACTGCTACAGGTGAAATTGTTTTGGTGAATAA-GAATGCAT 652
Query 968 GCAAACCGTTTTATGTGTTCTACTTTAATCCCGG-AAGGAACACTCTCCTAAGTGTTGAA 1026
|||||||||||||||||||||||||||| |||| ||| |||||||| || |||||||||
Sbjct 653 GCAAACCGTTTTATGTGTTCTACTTTAA-GCCGGAAAGTAACACTCTTCTGAGTGTTGAA 711
Query 1027 ATCCAAGGTGTTGGAGAAGACCACAAATGCCTCAACTTTCATACAGTTTGCGCCTTTGTA 1086
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 712 ATCCAAGGTGTTGGAGAAGACCACAAATGGTTCAACTTTCATACAGTTTGCGCCTTTGTA 771
Query 1087 GACCATGTAGAGGATCTTCAGTTTA 1111
|||||||||||||||||||||||||
Sbjct 772 GACCATGTAGAGGATCTTCAGTTTA 796
> Ahg336203 jgi|Araly1|336203|fgenesh1_pg.C_scaffold_1002768
Length=963
Score = 289 bits (156), Expect = 4e-77
Identities = 301/369 (82%), Gaps = 17/369 (5%)
Strand=Plus/Plus
Query 749 TGATAAACTATAAGGGTAAAGTAGGTGTGATTAATTT-GACGCATGCCTATGAACGTGTA 807
|||||||||||||||||||| ||||| |||||||||| ||| |||| || || ||| |
Sbjct 542 TGATAAACTATAAGGGTAAATTAGGTTTGATTAATTTAGAC-TATGCTTACGATGGTGGA 600
Query 808 TTTCCCCTTCAGTTACGTATGAC-GGTTCTAGAGGATTTTGAGAAACAGGAATGGTCGAC 866
||||||||| ||||||||||| | ||||||||||||| | ||||||||||||||| | ||
Sbjct 601 TTTCCCCTTGAGTTACGTATG-CGGGTTCTAGAGGATGTCGAGAAACAGGAATGGACTAC 659
Query 867 ATATGTCTACACTTTGATGGCTGAGAATATAG---TC--G-TTAAGTA---TGTTTCCGT 917
||||||||||||||||||||||||||||| || || | |||| | | |||||||
Sbjct 660 ATATGTCTACACTTTGATGGCTGAGAATAAAGCCGTCATGGTTAACAACAATCTTTCCGT 719
Query 918 GGTTGGGATGACTGCTACAGGTGATATTGTTTTGGTGAAA-ACAAATGCATGCAAACCGT 976
|||||| |||||| ||||||| |||||||||| ||| | || ||||| ||||| |
Sbjct 720 TGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGGCGAAGGATAA-TGCATATAAACCTT 778
Query 977 TTTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTG 1036
||||||| ||||||||||| |||| |||||||||||||| ||||||||| || |||||||
Sbjct 779 TTTATGTTTTCTACTTTAACCCCGAAAGGAACACTCTCCGAAGTGTTGAGATTCAAGGTG 838
Query 1037 TTGGAGAAGACCACA-AATGCCTCAACTTTCATACAGTTTGCGCCTTTGTAGACCATGTA 1095
|| ||||||| | | |||| | | ||||| ||||| ||||||||||||||||
Sbjct 839 TTAGAGAAGAGGA-AGAATGGTTTGGCGATCATAGAGTTTATTACTTTGTAGACCATGTA 897
Query 1096 GAGGATCTT 1104
||| |||||
Sbjct 898 GAGAATCTT 906
Score = 145 bits (78), Expect = 8e-34
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 622 ATGGCTTTGGTAAGACGTTTCTTGGCTGCAAAGAAGATTATTGGTGGCTCTGTAGCGAAA 681
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCTGTGGTAAGACGTTTCTTGGCTGCAAAGAAGATTATTGGTGGCTCTGTAGCGGAA 60
Query 682 CTGAGGAAAGAAACTTCAGCAATATTA 708
||||||||||||| |||||||||||||
Sbjct 61 CTGAGGAAAGAAAATTCAGCAATATTA 87
> Ahg922208 jgi|Araly1|922208|scaffold_103489.1
Length=883
Score = 287 bits (155), Expect = 1e-76
Identities = 304/372 (82%), Gaps = 25/372 (7%)
Strand=Plus/Plus
Query 747 ATTGATAAACTATAAGGGTAAAGTAG-GTGTGATTAA-TTTGACGCATGCCTATGAACGT 804
|||||||||||||||||| ||||| | ||| |||||| || || | |||| ||||| ||
Sbjct 485 ATTGATAAACTATAAGGGGAAAGT-GTGTGGGATTAAGTTGGA-GTATGCTTATGATGGT 542
Query 805 GTATTTCCCCTTCAGTT-ACGTATGACGGTTCTAGAGGATTTTGAGAAACAGGAATGGTC 863
| |||||||||| |||| | || || ||||||||||||| |||||||||||||||||||
Sbjct 543 GGATTTCCCCTTAAGTTGA-GTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTC 601
Query 864 GACA-TATGT-CTACACT-TTGATGGCTGAGAAT-AT-AGTCGTTAA--G-TATGTTTCC 915
|| | ||| | |||| | | || || | ||||| | || | ||| | || ||||
Sbjct 602 GA-ATTAT-TCCTACTGTCTGGA-GGTTAAGAATGTTAAG--GCTAACTGCAATCTTTCT 656
Query 916 GTGGTTGGGATGACTGCTACAGGTGATATTGTTTTGGTGAAAACA-AATGCATGCAAACC 974
|| ||||||||||| |||| |||||| ||||||||||| || | |||||| |||||
Sbjct 657 GTTGTTGGGATGACGGCTAGAGGTGAAATTGTTTTGGT-TAAGGAGGATGCATTTAAACC 715
Query 975 GTTTTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAGG 1034
||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 716 GTTTTATGTTTTCTACTTTAATCCCGAAAGGAACACTCTCCAAAGTGTTGAAATCCAAGG 775
Query 1035 TGTTGGAGAAGACCACAAATGC-CTCAACTTTC-ATACAGTTTGCGCCTTTGTAGACCAT 1092
||||||||||| ||| ||||| || ||| | | ||| ||||| || |||||||||||||
Sbjct 776 TGTTGGAGAAGTCCAAAAATGGTCT-AACAT-CGATATAGTTTTCGGCTTTGTAGACCAT 833
Query 1093 GTAGAGGATCTT 1104
||||||||||||
Sbjct 834 GTAGAGGATCTT 845
> Ahg338947 jgi|Araly1|338947|fgenesh1_pg.C_scaffold_2001046
Length=1011
Score = 265 bits (143), Expect = 6e-70
Identities = 259/312 (83%), Gaps = 19/312 (6%)
Strand=Plus/Plus
Query 752 TAAACTATAAGGGTAAAGTAGGTGTGATTAATT-TGACGCATGCCT-ATGAACGTGTATT 809
||||||||||||| ||| |||||| |||| ||| || | ||| || |||| ||| |||
Sbjct 401 TAAACTATAAGGGCAAATTAGGTGGGATTTATTGGGA-GTATG-CTGATGATGGTGGATT 458
Query 810 TCCCCTTCAGTTA-CGTATGACGGTTCTAGAGGATTTTGAGAAACAGGAATGGTC-GACA 867
||| ||| ||||| | |||| ||||||||||||| |||||||| | |||||||| || |
Sbjct 459 TCCTCTTGAGTTATC-TATGTGGGTTCTAGAGGATCTTGAGAAAAATGAATGGTCGGA-A 516
Query 868 TATGTCTACACTTTGATGGCTGAGAATATAGTCGTTAA-G-----T---ATGTTTCCGTG 918
|||| ||||||||||| |||||| |||| |||||||| | | || |||| ||
Sbjct 517 TATGCCTACACTTTGAAGGCTGATAATAGCGTCGTTAAGGTTAACTACAATCTTTCTGTT 576
Query 919 GTTGGGATGACTGCTACAGGTGATATTGTTTTGGTGAAAACA-AATGCATGCAAACCGTT 977
|||||| ||||||||| |||||| |||||||||| || || ||||||| ||||||||
Sbjct 577 GTTGGGGTGACTGCTAGAGGTGAAATTGTTTTGG-CCAAGCAGTATGCATGTAAACCGTT 635
Query 978 TTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTGT 1037
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 636 TTATGTTTTCTACTTTAATCCCGAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTGT 695
Query 1038 TGGAGAAGACCA 1049
||||||||||||
Sbjct 696 TGGAGAAGACCA 707
> Ahg922218 jgi|Araly1|922218|scaffold_103499.1
Length=959
Score = 263 bits (142), Expect = 2e-69
Identities = 304/379 (80%), Gaps = 24/379 (6%)
Strand=Plus/Plus
Query 749 TGATAAACTATAAGGGTAAAGTAGGTGTGATTAATTTGACGCATGCCTATGAACGTGTAT 808
|||||||||||||||||||| || ||| | ||||||||| | |||| |||| ||| ||
Sbjct 500 TGATAAACTATAAGGGTAAATTATGTGGGGTTAATTTGAAGTATGCTTATGGTGGTGGAT 559
Query 809 TTCCCCTTCAGTTACGTATGACGGTTCTAGAGGATTTTGAGAAACAGGAATGGTCGACAT 868
|||||||| ||||||||||| ||||||||||||| | |||||| |||||||| || |||
Sbjct 560 TTCCCCTTGAGTTACGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGTCAT 619
Query 869 ATGTCTACACTTTGATGGCTGAGAATATAGTC------GTTAAGT---ATGTTTCCGTGG 919
||| ||||||||||| || |||||||| |||| ||||| | || ||||||| |
Sbjct 620 ATGCCTACACTTTGAGGGATGAGAATAAAGTCTTTAAGGTTAACTACAATCTTTCCGTTG 679
Query 920 TTGGGATGACTGCTACAGGTGATATTGTTTTGGTGAAAACA-AATGCATGC-AAACCGTT 977
||||| |||||||| ||||||| |||||||||||| || || ||| ||| | ||||||||
Sbjct 680 TTGGGGTGACTGCTTCAGGTGAAATTGTTTTGGTG-AACCATAATACAT-CTAAACCGTT 737
Query 978 TTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTGT 1037
||||| ||||||||||||||| |||||||||| ||| || ||||||||||||| || |
Sbjct 738 ATATGTTTTCTACTTTAATCCCAAAAGGAACACTTTCCAAAATGTTGAAATCCAAAGTTT 797
Query 1038 TGGAG--AAGACCACAAATGCCTCA-AC---TTTCATACAGTTTG-CGCCTTTGTAGACC 1090
||||| ||| || | | | || |||| | || ||| ||||||||||||||
Sbjct 798 TGGAGCTAAG-GGTGAAGCGTTTAAGACTAGTTTCCT--AG-TTGACGCCTTTGTAGACC 853
Query 1091 ATGTAGAGGATCTTCAGTT 1109
|||||||||||||| ||||
Sbjct 854 ATGTAGAGGATCTTAAGTT 872
> Ahg922296 jgi|Araly1|922296|scaffold_103577.1
Length=1162
Score = 215 bits (116), Expect = 6e-55
Identities = 425/563 (75%), Gaps = 66/563 (12%)
Strand=Plus/Plus
Query 23 ATGATCA-TAAAATTCTGACCTTGGGAACTAGAAGAATGAGGTGGAGAAAGATCCATTGC 81
||||||| | | ||| |||| || |||||| ||| |||||||||||| |||||||| ||
Sbjct 244 ATGATCACT-ATATTTTGACATTAGGAACTGGAAAAATGAGGTGGAGGAAGATCCAATGT 302
Query 82 CCCTTAACT-CATGATCCTTT--TTGTGAAGGGATATGCATCAATGGGGTTTTATATTAC 138
||||||| | |||| | ||| |||||||||||||||||||||||||||||| ||||||
Sbjct 303 CCCTTAA-TCCATGGT--TTTAGTTGTGAAGGGATATGCATCAATGGGGTTTTGTATTAC 359
Query 139 TTAGCTATCCAAATT-GATG-AACC-CTTGGTTA-ACCAAAGGTCTTTTGTGATAGTTTG 194
|||||| | |||||| ||| ||| || | | | | ||| || ||| |||||||
Sbjct 360 TTAGCT-TACAAATTTGATATAACGTCT-GATGATA--AAAC-TCACTTGC--TAGTTTG 412
Query 195 CTTTGATGTTAGATTTGAAAAATTCACGTTCATTGACGTAGATTGC-TTTT--AT----- 246
|||||||||||| | ||||||| ||| ||| |||| | | | ||| |||| ||
Sbjct 413 CTTTGATGTTAGGTCTGAAAAAGTCAAGTTTGTTGATGCAAACTGCGTTTTTGATGATTG 472
Query 247 --C-A-T---TTGATAAATTATAAGGGAAAATTAGGTGGGATTGATTGGAAACATGGTAA 299
| | | |||||||| |||||||| ||||| |||| ||| ||||||| ||| | |
Sbjct 473 GTCTACTACATTGATAAACTATAAGGGTAAATTCGGTGTTATTAATTGGAAGTATGATGA 532
Query 300 CGCTAATGGAAGTCGTACCTTTGAGTTGAGTATGTGGGTTCTTGAGGATGTCGAGAAACA 359
||| | | | | || |||||||||||||||||||||| ||||||| |||||||
Sbjct 533 TGCT--T--A--T-G--CCATTGAGTTGAGTATGTGGGTTCTAGAGGATG---AGAAACA 580
Query 360 TGAATGGTCGAAATACGACTGCACTTTTCTTGAG-T-A-TGAAGTC-ATGTTCTACAATA 415
||||||||| ||||| | || |||||||| ||| | | | ||| | ||| ||| | |
Sbjct 581 TGAATGGTCAAAATATGTCTACACTTTTCCGGAGATTAATAAAGCCCATGATCT-CGACC 639
Query 416 TTTCTCTTGCCGTTGG-GATGACTGCTACATGTGAAATTGT-TTTGTC--GGAG-AAGTT 470
|| |||| | || | |||||||| || |||||||||| ||| || || | || |
Sbjct 640 TTAGACTTGA--T-GGAG-TGACTGCTGCAGGTGAAATTGTATTT-TCAAGGTGGAAATC 694
Query 471 TGCATCTAAATCGTTTTATGTCTTCTACTTCAATCCCGAAAGAGAA-ACTCTCCAAAGA- 528
| ||| |||| |||||||||| || |||| |||||||| ||| ||| |||||||||| |
Sbjct 695 TACATGTAAACCGTTTTATGTTTTATACTACAATCCCGGAAG-GAACACTCTCCAAA-AC 752
Query 529 GTTGAAATCCAAGGATT-GGAGA 550
|||||||||||||| || |||||
Sbjct 753 GTTGAAATCCAAGGTTTTGGAGA 775
Score = 145 bits (78), Expect = 8e-34
Identities = 245/320 (77%), Gaps = 33/320 (10%)
Strand=Plus/Plus
Query 739 TCTACTACATTGATAAACTATAAGGGTAAAGTAGGTGTGATTAATTTGACGCATGCCT-A 797
|||||||||||||||||||||||||||||| | ||||| ||||||| || | ||| | |
Sbjct 474 TCTACTACATTGATAAACTATAAGGGTAAATTCGGTGTTATTAATTGGAAGTATGA-TGA 532
Query 798 TGAACGTGTATTTCCCCTTCAGTT-ACGTATGACGGTTCTAGAGGATTTTGAGAAACAGG 856
|| | | ||| || || |||| | ||||| ||||||||||||| |||||||| |
Sbjct 533 TG--C-T-TATG-CCA-TTGAGTTGA-GTATGTGGGTTCTAGAGGAT---GAGAAACATG 582
Query 857 AATGGTCGACATATGTCTACACTTTGATGGCTGAG-AATATAGTCGTTAAGTAT-GTTTC 914
||||||| | ||||||||||||||| || || |||| || | | | | | | |
Sbjct 583 AATGGTCAAAATATGTCTACACTTTTCCGGA-GATTAATAAAGCCCATGA-TCTCGA--C 638
Query 915 CGTGG--TTG--GGA-TGACTGCTACAGGTGATATTGT-TTT----GGTGAAAA-CAAAT 963
| | | ||| ||| |||||||| ||||||| ||||| ||| |||| ||| | |
Sbjct 639 CTTAGACTTGATGGAGTGACTGCTGCAGGTGAAATTGTATTTTCAAGGTGGAAATCTA-- 696
Query 964 GCATGCAAACCGTTTTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTT 1023
|||| |||||||||||||| || |||| |||||||||||||||||||||| || |||
Sbjct 697 -CATGTAAACCGTTTTATGTTTTATACTACAATCCCGGAAGGAACACTCTCCAAAACGTT 755
Query 1024 GAAATCCAAGGTGTTGGAGA 1043
|||||||||||| |||||||
Sbjct 756 GAAATCCAAGGTTTTGGAGA 775
> Ahg922192 jgi|Araly1|922192|scaffold_103473.1
Length=973
Score = 178 bits (96), Expect = 8e-44
Identities = 241/306 (79%), Gaps = 29/306 (9%)
Strand=Plus/Plus
Query 747 ATTGATAAACTATAAGGGTAAAGTAGGTGTGATTAATTTGACGCATGCCTATGAACGTGT 806
|||||||||||||||||| ||| |||||| ||||||||||| | | | || || ||
Sbjct 500 ATTGATAAACTATAAGGGGAAATTAGGTGGGATTAATTTGA-AC-T-ACAAT-AA--TGG 553
Query 807 ATTTCCCCTTCAGTTACGTATGACGGTTCTAGAGGATTTTGAGAAACAGGAATGGTCGAC 866
|||||||||| | | |||| ||||||||| ||| | |||||||| ||||||||||
Sbjct 554 ATTTCCCCTT-A---A--TATGTGGGTTCTAGAAGATGTCGAGAAACAAGAATGGTCGAA 607
Query 867 ATATGTCTACACTTTGATG-GCTGAGAATATAGTCGTTAA-G-T------ATG-TTTCCG 916
|||||| ||| ||||| || ||||||| || ||||||||| | | | | |||| |
Sbjct 608 ATATGTATACTCTTTG-TGTGCTGAGAGTAAAGTCGTTAAGGTTAACCCCAAGCTTTCTG 666
Query 917 TGGTTGGGATGACTGCTACAGGTGATATTGTTTTG--GTGAAAACAAATGCATGC-AAAC 973
| |||||||||||||||||||||||||| |||||| | | || || || | || |
Sbjct 667 TTGTTGGGATGACTGCTACAGGTGATATAGTTTTGTCGGGGAAGTTTAT--AT-CTAATC 723
Query 974 CGTTTTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAG 1033
| |||||||| || ||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 724 CATTTTATGTTTTTTACTTCAATCCCGAAAGGAACACTCTCCTAAGTGTTGAAATCAAAG 783
Query 1034 GTGTTG 1039
|| |||
Sbjct 784 GTCTTG 789
> Ahg336202 jgi|Araly1|336202|fgenesh1_pg.C_scaffold_1002767
Length=384
Score = 159 bits (86), Expect = 3e-38
Identities = 228/294 (78%), Gaps = 20/294 (7%)
Strand=Plus/Plus
Query 826 ATGACGGTTCTAGAGGATTTTGAGAAACAGGAATGGTCGACATATGTCTACACTTTGATG 885
||| |||||||||||||| | |||||| ||||||||||| |||||||||||| || ||
Sbjct 1 ATGTCGGTTCTAGAGGATGTCGAGAAATTGGAATGGTCGAAATATGTCTACAC-TT--TG 57
Query 886 GCTGAGAAT-ATAGTCGT-T-AAGTATGTTTCCGTGGTTGGGATGACTGCTACAGGTGAT 942
|| | ||| | | | || | | |||||| || ||||| ||||| |||| ||||||
Sbjct 58 CCTCACAATGACATTGGTGTCTACAATGTTTTTGTCGTTGGTATGACGGCTAGAGGTGAA 117
Query 943 ATTGTTTTGG-TGAAAACAAATGCATGC-AAACCGTTTTATGTGTTCTACTTTAATCCCG 1000
|||||||||| || || || ||| | ||||| |||||||| || ||||| ||| |||
Sbjct 118 ATTGTTTTGGCGGAGAA-GTATACAT-CAAAACCATTTTATGTTTTGTACTTCAAT-CCG 174
Query 1001 G-AAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTGTTGGAG-AAGAC-CACAAATGCC 1057
| || ||||||| ||| |||||||||||||||||||||||||| | || || |
Sbjct 175 GAAAAGAACACTATCCAAAGTGTTGAAATCCAAGGTGTTGGAGCTA-ACGGTGAAGCGTT 233
Query 1058 TCA-ACT--TTCATACAGTTTGCGCCTTTGTAGACCATGTAGAGGATCTTCAGT 1108
| | ||| || || ||||| |||||||||||||||||||||||||||| |||
Sbjct 234 TGAGACTGATT-GTAGAGTTTACGCCTTTGTAGACCATGTAGAGGATCTT-AGT 285
> Ahg336233 jgi|Araly1|336233|fgenesh1_pg.C_scaffold_1002798
Length=840
Score = 154 bits (83), Expect = 1e-36
Identities = 146/176 (83%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 938 GTGATATTGTTTTGGTGAAAACAAATGCATGCAAACCGTTTTATGTGTT-CTACTTTAAT 996
|||| |||||||||| ||| ||||| || ||| ||||||||||| || ||||||||||
Sbjct 494 GTGAAATTGTTTTGGCGAAGGGAAATGTATACAATCCGTTTTATGT-TTACTACTTTAAT 552
Query 997 CCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTGTTGGAGAAGACCACAAA-TG 1055
|||| || ||||||||||||||||||||||||||||||||| |||||| | | | ||
Sbjct 553 CCCGAAAAAAACACTCTCCTAAGTGTTGAAATCCAAGGTGTTAGAGAAGGGGA-AGACTG 611
Query 1056 C-CTCAACTTTCATACAGTTTGCGCCTTTGTAGACCATGTAGAGGATCTTCAGTTT 1110
|| ||| |||||| ||||| | ||||||||| |||||||||| ||||||||||
Sbjct 612 GTCT-AACATTCATAGAGTTTACTACTTTGTAGATCATGTAGAGGGTCTTCAGTTT 666
> Ahg927913 jgi|Araly1|927913|scaffold_300370.1
Length=336
Score = 119 bits (64), Expect = 5e-26
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 613 AAACACAAAATGGCTTTGGTAAGACGTTTCTTGGCTGCAAAGAAGATTATTGGTGGCTCT 672
||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 13 AAACA-AAAATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGATTATTGGTGGCTCA 71
Query 673 GTAGC-GAAACTGAGGAAAGAAACTTCAGC 701
||||| | | | ||||||||||||||||||
Sbjct 72 GTAGCAGGAGC-GAGGAAAGAAACTTCAGC 100
> Ahg495332 jgi|Araly1|495332|fgenesh2_kg.8__1148__AT5G52620.1
Length=1068
Score = 67.6 bits (36), Expect = 2e-10
Identities = 88/112 (79%), Gaps = 7/112 (6%)
Strand=Plus/Plus
Query 31 AAA-ATTCTGACCTTGGGAACTAGAAGAATG-AG-GTGGAGAAAGATCCATTGCCCCTTA 87
||| |||| ||| || ||||| ||| || | || ||||| | |||||| || | | ||
Sbjct 513 AAATATTCAGACATTACGAACTGGAA-AA-GTAGCATGGAGGACGATCCAATGTCTCGTA 570
Query 88 -ACTCATGATCCTTTTTGTGAAGGGATATGCATCAATGGGGTTTTATATTAC 138
|| ||| ||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 571 GAC-CATTATCCTATAAGTGAAGGGATATGCATCAATGGGGTTTTGTATTAC 621
> Ahg932652 jgi|Araly1|932652|scaffold_400640.1
Length=719
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 113 TATGCATCAATGGGGTTTTATATTACTTAG 142
||||||||||||||||||||||||||||||
Sbjct 206 TATGCATCAATGGGGTTTTATATTACTTAG 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5