BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30940.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922181 jgi|Araly1|922181|scaffold_103462.1 1002 0.0
Ahg922183 jgi|Araly1|922183|scaffold_103464.1 821 0.0
Ahg336206 jgi|Araly1|336206|fgenesh1_pg.C_scaffold_1002771 553 1e-156
Ahg922215 jgi|Araly1|922215|scaffold_103496.1 416 2e-115
Ahg336209 jgi|Araly1|336209|fgenesh1_pg.C_scaffold_1002774 313 3e-84
Ahg922295 jgi|Araly1|922295|scaffold_103576.1 91.6 1e-17
Ahg922296 jgi|Araly1|922296|scaffold_103577.1 58.4 1e-07
> Ahg922181 jgi|Araly1|922181|scaffold_103462.1
Length=2185
Score = 1002 bits (542), Expect = 0.0
Identities = 825/956 (86%), Gaps = 41/956 (4%)
Strand=Plus/Plus
Query 298 TATGCCTCTGGTTTGATTTATTTTGATGGTATGTGCATCCGAAAGGAGGATGAGGATGCA 357
||||||||||||||||| |||||| || |||| |||||| || ||| ||||| |||| |
Sbjct 1080 TATGCCTCTGGTTTGATCTATTTTCATAATATGCGCATCCCAAGGGAAGATGAAGATGAA 1139
Query 358 AAGCATGTTTTATGTGACCCTCTCACAGGAAAGTATGTGATCTTACCTGAACTTAGAGTA 417
|||| ||| || |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1140 AAGCGTGTGTTGTGTGACCCTCTCACTGGACAGTATGTGATCTTACCTGAACTTAGAGTA 1199
Query 418 GGTGATTCGTATAGCTATTTAGGGTTTGATCCAG-TTGATAAGGAATTCAAGGTATTGTT 476
||| |||||| ||||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 1200 GGTCATTCGTGTAGCTATTTAGGGTTTGATCC-GATTGATAAGGAATTCAAGGTTTTGTT 1258
Query 477 CATGACTACTCGTAATAATATAGCTTGGAAGGATCTAGATCATTATATTCTGACATTGGG 536
||||| |||| || || | ||||| | |||||| |||||||||||||| ||||| ||||
Sbjct 1259 CATGAATACTAGTGATTACATAGCGTCTAAGGATGTAGATCATTATATTTTGACACTGGG 1318
Query 537 AACTGGGGAATTGAAATGGAGGAGGATCCGATGTGCTTTTACCCATGAGCCTGTGTGGGA 596
||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| |||
Sbjct 1319 AACTGGGAAATTGAAATGGAGGAAGATCCGATGTCCTTTTACCCATGAGCCTGTGT-GGA 1377
Query 597 A-AGGATTTGTATCAATGGAGTTTTGTATTACTCAGCTATGAA-TTCTGATGGA---AAT 651
| |||||||| |||||||| ||||||||||||| |||||| || |||| ||||| |
Sbjct 1378 ATAGGATTTGCATCAATGGGGTTTTGTATTACTTAGCTAT-AAGTTCTAATGGATTGCCT 1436
Query 652 TATGTGATAGTTTGTTTTGATGTTA----T------TTCAAGC-TCGTTGACGCAGAATG 700
||||| ||||||| |||||||||| | ||||||| || ||||| |||||
Sbjct 1437 TATGTTTTAGTTTGCTTTGATGTTAGGTCTGAGAAATTCAAGCTTC-TTGACATAGAATA 1495
Query 701 CCGTTCTAGATTTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGATTATTTTGGA 760
||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1496 CCGTTATGGATTTGATGGATTGATAAACTATAAGGGGAAATTATGTGGGATTAATTTGAA 1555
Query 761 GTATGCTAGTCATGATGGTGGATCTACC-GTTAAGTTGAGTATGTGGGTTTTAGAGGATG 819
||||||| | || ||||||||| | || |||||||||| |||| ||||| |||||||||
Sbjct 1556 GTATGCT--T-ATCATGGTGGAT-TTCCAGTTAAGTTGACTATGAGGGTTCTAGAGGATG 1611
Query 820 TCGAGAAACCGGAATGGTCGAAACATGTCTACTCGTTGTGGACGGAGAGTCAAGTCGTTA 879
||||||||| ||||||||||||||||| |||||| |||||| ||||||| |||||||||
Sbjct 1612 TCGAGAAACTGGAATGGTCGAAACATGACTACTCTTTGTGGGTGGAGAGTAAAGTCGTTA 1671
Query 880 AGGTTAACCATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGA 939
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 AGGTTAACAATAATCTTTCCGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGA 1731
Query 940 CAAAATATGCATCTCAG-CCGTTTTATGTTTTCTACTTCAATCCAGAAAGGAAA-ACTCT 997
|| |||| ||| || |||| ||| |||||||||||||||| ||||| ||| || ||
Sbjct 1732 TGAATTATGTATC-CAATCCGTGTTACATTTTCTACTTCAATCCGGAAAG-AAACACCCT 1789
Query 998 GCAAGTCCCAAGTGTTGAAGTCGAGGGTCTTGGAGCTAATCGTGCTTGCATGTCTTATTA 1057
||||||| |||||||||| || | |||||||| |||||||||| |||||| |||| ||
Sbjct 1790 CCAAGTCCAAAGTGTTGAAATCCAAGGTCTTGGTGCTAATCGTGATTGCATATCTTGCTA 1849
Query 1058 CGCCTTTGCT-GACTATGTAGAGGATCTTAGTGTTAACGATGCAGTGC-GACAACTCAAG 1115
|||||||| | ||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 1850 CGCCTTTG-TAGACTATGTAGAGGATCTTAGTGTTAACGATGCAATGCTG-CAACTCAAG 1907
Query 1116 TCAAGCCCTTTACAACAACAAGGCCAAAATATCGTTACCAAGAGGCCAAAACCAC-GACA 1174
||||||||||||| ||| |||| |||||||||||||||||||||||||||| | ||
Sbjct 1908 TCAAGCCCTTTACTGCAA---GGCCGAAATATCGTTACCAAGAGGCCAAAACCAAAG-CA 1963
Query 1175 AGGCCAAG-ATACATCTCATGACCTCTCCAAGTCTGCTCCGTCTGTGAAGAACAAG 1229
| || | | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1964 ACGC-AGGCATACATCTCGTGACCTCTCCAAGTCTGCTCCGTCTGTGAAGAACAAG 2018
Score = 754 bits (408), Expect = 0.0
Identities = 777/946 (82%), Gaps = 62/946 (7%)
Strand=Plus/Plus
Query 308 GTTTGATTTATTTTGATGGTATGTGCATCCGAAAGGAGGATGAGGATGCAA-AGCATGTT 366
||||||| |||||| || |||| |||||| |||||| ||||| |||| || ||| |||
Sbjct 1 GTTTGATCTATTTTCATAATATGCGCATCCCAAAGGAAGATGAAGATG-AACAGCGTGTG 59
Query 367 TTATGTGACCCTCTCACAGGAAAGTATGTGATCTTACCTGAACTTAGAGTAGGTGATTCG 426
|| | |||||||||||| ||| ||||||||||||||||| ||||| || |||||| |||
Sbjct 60 TTGTATGACCCTCTCACTGGACAGTATGTGATCTTACCTCAACTT--AG-AGGTGAATCG 116
Query 427 TATAGCTATTTAGGGTTTGATCCAG-TTGATAAGGAATTCAAGGTATTGTTCATGACTAC 485
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |||
Sbjct 117 GATAGCTATTTAGGGTTTGATCC-GATTGATAAGGAATTCAAGGTATTGGTCATGAATAC 175
Query 486 TCGTAATAATATAGCTTGGAAGGATCTAGATCATTATATTCTGACAT-TGGGAACTGGGG 544
| || || ||| ||||| || ||| |||||||| ||||| |||| | |||||||||||
Sbjct 176 TAGTTATTATACAGCTTATAATGATGTAGATCATCATATTTTGAC-TGTGGGAACTGGGA 234
Query 545 AATTGAAATGGAGGAGGATCCGATGTGCTTTTACCCATGAGCCTGTGTGGGAAAGGATTT 604
|| ||| ||||||| ||||| |||| ||||||| ||||||||| | ||||||||||| |
Sbjct 235 AACTGAGGTGGAGGAAGATCCAATGTCCTTTTACTCATGAGCCTTTTTGGGAAAGGATAT 294
Query 605 GTATCAAT-GGAGTTTTGTATTACTCAGCTATGA-ATTCTGATGGAA---ATTATGTGAT 659
| || ||| ||| |||||||||||| |||| | | |||||||||||| ||| | || |
Sbjct 295 GCATTAATGGGA-TTTTGTATTACTTAGCTCT-AGATTCTGATGGAAGGTATTTTATGGT 352
Query 660 AGTTTGTTTTGATGTT--A--T------TTCAAGCTCGTTGACGCAGAATGCCGTTCTAG 709
|||||| ||||||||| | | |||||||||||||| ||||||||||| | |
Sbjct 353 AGTTTGCTTTGATGTTCGATCTGAGAAATTCAAGCTCGTTGATATAGAATGCCGTT-TTG 411
Query 710 ATTTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGATT-ATTTTGGAGTATGCTA 768
| | || | | ||||||||||||||||||||||||||||| | |||| || |||||
Sbjct 412 A-TCAA---CTCG-TAAACTATAAGGGGAAATTATGTGGGATTGA-TTTGAAGAATGCT- 464
Query 769 GTCATGATGGTGGATCTACCGTTAAGTTGA-GTATGTGGGTTTTAGAGGATGTCGAGAAA 827
| || ||||||||| | || || |||| | ||||||||||| |||| |||||| |||||
Sbjct 465 -T-ATTATGGTGGATTTCCCCTTGAGTT-ACGTATGTGGGTTCTAGAAGATGTCCAGAAA 521
Query 828 CCGGAATGGTCGAAACATGTCTACTCGTTG-TGGACGGAGAGTCAAGTCGTTAAGGTTAA 886
| ||||||||||||| |||||||| | ||| ||| || | | ||||||||||||||||
Sbjct 522 CGGGAATGGTCGAAATATGTCTACACTTTGAGGGA-TGATAATAAAGTCGTTAAGGTTAA 580
Query 887 CCATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGACAAAAT- 945
| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 581 CTATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTTG-TTGAATA 639
Query 946 ATGCATCTCAGCCGTTTTATGTTTTCTACTTCAATCCAGAAAGGAAAACTCTGCAAGTCC 1005
|||||||| | |||| |||||||| |||||||||||| |||||||| ||||| ||| |||
Sbjct 640 ATGCATCTAATCCGTATTATGTTTCCTACTTCAATCCGGAAAGGAACACTCTCCAAATCC 699
Query 1006 CAAGTGTTGAAGTCGAGGGTCTTGGAGCTAATCGTGCTTGCATGTCTTA-T--TACGCCT 1062
|||||||||| || | |||||| |||||||| ||| | ||||| |||| | |||||||
Sbjct 700 AAAGTGTTGAAATCCAAGGTCTTCGAGCTAATTGTGATCGCATGGCTTATTACTACGCCT 759
Query 1063 TTGCT-GACTATGTAGAGGATCTTAGTGTTAACGATGC-AGTGCGACAACTCAAGTCAAG 1120
||| | |||||||||||||||||||||||||||||||| | ||| | | |||||||||||
Sbjct 760 TTG-TAGACTATGTAGAGGATCTTAGTGTTAACGATGCGA-TGC-A-A-CTCAAGTCAAG 814
Query 1121 CCCTTTACAACAACAAGGCCAAAATATCGTTACCAAGAGGCCAAAACCACGACAAGGCCA 1180
||||||||||||| | ||||||||||||||| ||| ||| ||||||||| ||
Sbjct 815 CCCTTTACAACAAT--G-CCAAAATATCGTTACT--GAG---AAA-CCACGACAACGCTG 865
Query 1181 AGATACATCTCATGACCTCTCCAAGTCTGCTCCGTCTGTGAAGAAC 1226
|||| |||| |||||||||||| |||||||||||||||| ||||
Sbjct 866 CTATACGTCTCGTGACCTCTCCAATTCTGCTCCGTCTGTGATGAAC 911
Score = 200 bits (108), Expect = 2e-50
Identities = 142/158 (90%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 1072 ATGTAGAGGATCTTAGTGTTAACGATGCAGTGCGACAACTCAAGTCAAGCCCTTTACAAC 1131
|||||||||||||||||||||| |||||||||| ||||||||||||| |||||| ||
Sbjct 913 ATGTAGAGGATCTTAGTGTTAATGATGCAGTGCTTCAACTCAAGTCAAACCCTTT---AC 969
Query 1132 AACAAGGCCAAAATATCGTTACCAAGAGGCCAAAACCACGACAAGGCCAAGATACATCTC 1191
||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||| |
Sbjct 970 AACAATGCCAAAATATCGTTACCAAGAGGCCAAAACCACGACATCGCCGACATACATCAC 1029
Query 1192 ATGACCTCTCCAAGTCTGCTCCGTCTGTGAAGAACAAG 1229
|||||||||||||||| |||||| |||||||||||||
Sbjct 1030 GTGACCTCTCCAAGTCTTCTCCGTTTGTGAAGAACAAG 1067
> Ahg922183 jgi|Araly1|922183|scaffold_103464.1
Length=1129
Score = 821 bits (444), Expect = 0.0
Identities = 788/947 (83%), Gaps = 52/947 (5%)
Strand=Plus/Plus
Query 308 GTTTGATTTATTTTGATGGTATGTGCATCCGAAAGGAGGATGAGGATGCAAAGCATGTTT 367
||||||| |||||| || |||| |||||| |||||| ||||| |||||||||| ||| |
Sbjct 1 GTTTGATCTATTTTCATAATATGCGCATCCCAAAGGAAGATGAAGATGCAAAGCGTGTGT 60
Query 368 TATGTGACCCTCTCACAGGA-AAGTATGTGATCTTACCTGAACTTAGA-GT-AGGT-G-A 422
|||||||||||||||||||| || ||||| |||||||||||||||||| || | | | |
Sbjct 61 TATGTGACCCTCTCACAGGACAA-TATGTTATCTTACCTGAACTTAGAGGTCA-CTCGTA 118
Query 423 TTCGTATAGCTATTTAGGGTTTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATGAC 482
|||||||| ||||||||||||||||||| | || |||||||||||||| ||||||||||
Sbjct 119 TTCGTATAACTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTTTTGTTCATGAA 178
Query 483 TACTCGTAATAATATAGCTTGGAAGGATCTAGATCATTATATTCTGACATTGGGAACTGG 542
|||| || || |||||| | |||||| |||||||| ||||| ||||| | ||| ||||
Sbjct 179 TACTAGTGATTTTATAGCGTCTAAGGATGTAGATCATCATATTTTGACACTAGGAGCTGG 238
Query 543 GGAATTGAAATGGAGGAGGATCCGATGTGCTTTTACCCATGAGCCTGTGTGGGAA-AGGA 601
|||||||||||||||| |||||||||| |||||||||||||||||| || |||| ||||
Sbjct 239 AGAATTGAAATGGAGGAAGATCCGATGTCCTTTTACCCATGAGCCTGGGT-GGAATAGGA 297
Query 602 TTTGTATCAATGGAGTTTTGTATTACTCAGCTATGA-ATTCTGATGGA---AATTATGTG 657
|||| |||||||| ||||||||||||| |||| | | ||||||||||| |||||||
Sbjct 298 TTTGCATCAATGGGGTTTTGTATTACTTAGCTCT-ACATTCTGATGGAGGTCCTTATGTG 356
Query 658 ATAGTTTGTTTTGATGTTA----T------TTCAAGCTCGTTGACGCAGAATGCCGTTCT 707
|||||||| |||||||||| | |||||| || | | |||| || | | |||
Sbjct 357 ATAGTTTGCTTTGATGTTAGTTCTGAGAAATTCAAGTTCATAGGCGCA-AAAGAC-TTCC 414
Query 708 A-GATTTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGATTATTTTGGAGTATGC 766
| || | | | ||||| ||||||||||| |||||||||||| ||| | ||||| |||
Sbjct 415 ATGA--TCA--G-TTGATTAACTATAAGGGAAAATTATGTGGGGTTAATGTGGAGCATG- 468
Query 767 TAGTCATGATGGTGGATCTACCGTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGAA 826
| | ||| |||||||| | ||||||||||| ||||||||||| |||| |||||| ||||
Sbjct 469 -A-TAATGGTGGTGGATTTCCCGTTAAGTTGTGTATGTGGGTTCTAGAAGATGTCCAGAA 526
Query 827 ACCGGAATGGTCGAAACATGTCTACTCGTTGTGGACGGAGAGTCAAGTCGTTAAGGTTAA 886
||| |||||||| ||| |||||||| | ||| || | || | | |||||||||| |||||
Sbjct 527 ACCTGAATGGTCCAAATATGTCTACACTTTGAGGGCTGATAATAAAGTCGTTAATGTTAA 586
Query 887 C-CATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGACAAAAT 945
| | |||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 587 CTC-TAATATTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGTTGAA-T 644
Query 946 ATG-CATCTCAGCC-GTTTTATGTTTTCTACTTCAATCCAGAAAGGAAAACTCTGCAAGT 1003
||| |||| || | || ||||||||||||||||||||| ||| |||| ||||| |||||
Sbjct 645 ATGGCATC-CAATCTGTATTATGTTTTCTACTTCAATCCGGAATGGAACACTCTCCAAGT 703
Query 1004 CCCAAGTGTTGAAGTCGAGGGTCTTGGAGCTAATCGTGCTTGCAT-GTCTTATTACGCCT 1062
|| |||||||||| || | ||||||||||||||||||| | |||| | |||| |||||||
Sbjct 704 CCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCGCATAG-CTTACTACGCCT 762
Query 1063 TTGCT-GACTATGTAGAGGATCTTAGTGTTAACGATGCAGTGC-GACAACTCAAGTCAAG 1120
||| | ||||||||||||||||||||||||||||||||| ||| | || ||||||||||
Sbjct 763 TTG-TAGACTATGTAGAGGATCTTAGTGTTAACGATGCACTGCTGCCAT-TCAAGTCAAG 820
Query 1121 CCCTTTACAACAACAAGGCCAAA-ATATCGTTACCAAGAGGCCAAAACCACGACAAGGCC 1179
||||||||||||| ||| ||| |||| ||||||||||||| ||||||||||||| ||
Sbjct 821 CCCTTTACAACAA---GGC-AAAGATATAGTTACCAAGAGGCTAAAACCACGACAACTCC 876
Query 1180 AAGATACATCTCATGACCTCTCCAAGTCTGCTCCGTCTGTGAAGAAC 1226
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 877 GCTATACATCTCGTGACCTTTCCAAGTCTGCTCCATCTGTGAAGAAC 923
Score = 80.5 bits (43), Expect = 3e-14
Identities = 54/59 (92%), Gaps = 2/59 (3%)
Strand=Plus/Plus
Query 1072 ATGTAGAGGATCTTAGTGTTAACGATGCAGTGC-GACAACTCAAGTCAAGCCCTTTACA 1129
||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||
Sbjct 1072 ATGTAGAGGATCTTAGTGTTAACGATGCAATGCTGT-AACTTAAGTCAAGCCCTTTACA 1129
> Ahg336206 jgi|Araly1|336206|fgenesh1_pg.C_scaffold_1002771
Length=2166
Score = 553 bits (299), Expect = 1e-156
Identities = 743/941 (79%), Gaps = 95/941 (10%)
Strand=Plus/Plus
Query 328 ATGTGCATCCGAAAGGAGGATGAGGATGCAAAGCATGTTTTATGTGACCCTCTCACAGGA 387
||| |||||| |||||| ||||| |||| ||||| ||| |||||||||||||||||||||
Sbjct 1 ATGCGCATCCCAAAGGAAGATGAAGATGAAAAGCGTGTGTTATGTGACCCTCTCACAGGA 60
Query 388 -AAGTATGTGATCTTACCTGAACTTAGA-GT-AGGT-G-ATTCGTATAGCTATTTAGGGT 442
|| ||||| |||||||||||||||||| || | | | |||||||||||||||||||||
Sbjct 61 CAA-TATGTTATCTTACCTGAACTTAGAGGTCA-CTCGTATTCGTATAGCTATTTAGGGT 118
Query 443 TTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATGACTACTCGTAATAATATAGCTT 502
||||||| |||||||||||||||||||| |||||||||| |||| || || ||| ||||
Sbjct 119 TTGATCCGGTTGATAAGGAATTCAAGGTGTTGTTCATGAATACTAGTGATTTTATGGCTT 178
Query 503 GGAAGGAT-CTAGATCATTATATTCTGACATTGGGAACTGGGGAATTGAAATGGAGGAGG 561
|| || | ||||||| ||||| ||||| | ||| |||| |||||||||||||||| |
Sbjct 179 ATAATTATAC-AGATCATCATATTTTGACACTAGGAGCTGGAGAATTGAAATGGAGGAAG 237
Query 562 ATCCGATGTGCTTTTACCCATGAGCC-TGTGTGGGAAAGGATTTGTATCAATGGAGTTTT 620
|||| |||| ||||||| |||||||| | | ||||||||||| || || |||||||||||
Sbjct 238 ATCCAATGTCCTTTTACTCATGAGCCCTTT-TGGGAAAGGATATGCATTAATGGAGTTTT 296
Query 621 GTATTACTCAGCT-ATGAATTCTGAT----G--GAAA----T-T-ATGTGATAGTTTGTT 667
||||||||||||| | | ||||||| | |||| | | ||||||||||||| |
Sbjct 297 GTATTACTCAGCTCAACA-TTCTGATTCTAGTCGAAAAAGGTCTTATGTGATAGTTTGCT 355
Query 668 TTGATGTTATTTCA-AGC--T-C--GTTGA--CGC--AGAATGCCGTTC-TAGATTTAAT 716
||||||||| || || | | ||| | ||| |||| || || | | | | |
Sbjct 356 TTGATGTTAGGTCTGAGAAATTCAAGTTCATACGCGCAGAACGCTGT-CATGG-TC-A-- 410
Query 717 GGATTGATAAACTATAAGGGGAAATTATGTGGGATTATTTTGGAGTATGCTAGTCATGAT 776
| |||||||||||||||||||| ||||||||| ||| | || ||||| | || | |
Sbjct 411 G--TTGATAAACTATAAGGGGAAGTTATGTGGGGTTAATGTGTAGTATAATTGTG--G-T 465
Query 777 GGTGGATCTACCGTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGAAACCGGAATGG 836
||||| | | || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 466 GGTGGTTTTCCCCTTAAGTTGAGTATGTGGGTTCTAGAGGATGTCGAGAAACCGGAATGG 525
Query 837 TCGAAACATGTCTACTCGTTGTGGACGGAGAGTCAAGTCGTTAAGGTTAACCA-TAATCT 895
|| ||| |||| ||||| |||||| | || | | | | ||| || || || |||
Sbjct 526 TCTAAATATGTATACTCTTTGTGGGCTGA---T-A--T--TAAAG-TTGCCCGCTA-TCT 575
Query 896 TTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGAC--AAAATATGCATCT 953
||| |||||||||||||||||||||||||||||||||||||||| |||| | | |||
Sbjct 576 TTCCGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGATGGAAAACACG--TCT 633
Query 954 CAGCCGTTTTATGTTTTCTACTTCAATCCAGAAAGGAAAACTCTGCAAGTCCCAAGTGTT 1013
| || |||||||| |||||||||||||| | |||||||||||| ||| | |||||
Sbjct 634 AACCCATTTTATGTCTTCTACTTCAATCCCGGAAGGAAAACTCTTCAA-T-----GTGTT 687
Query 1014 GAAGTCGAGGGTCTTGGAGCTAATCGTGCTTGCATGTCTTATTACGCCTTTGCT-GACTA 1072
||| || | ||| |||| | |||||||| || || | | | | |||| | |||||
Sbjct 688 GAAATCCAAGGTTTTGGTGGTAATCGTG-TT---TG-C--A---C-C-TTTG-TAGACTA 734
Query 1073 TGTAGAGGATCTTAGTGTTAACGATGCAGTGCGACAACTCAAGTCAAGCCCTTTACAACA 1132
|||||||||||||||| |||||| || | ||| | ||| ||||||||||||||||||||
Sbjct 735 TGTAGAGGATCTTAGTATTAACGTTGAAATGCAA-AAC--AAGTCAAGCCCTTTACAACA 791
Query 1133 ACAAGGCCAAAATATCGTTACCAAGAG--GCCA-AAACCACGACAAGGCCAAG-ATACAT 1188
| | || ||||||||||| ||||| || | ||||||| |||| || | ||||||
Sbjct 792 AT--G-CCGAAATATCGTTA--AAGAGAAGC-AGAAACCACAACAACGCGG-GCATACAT 844
Query 1189 CTCATGACCTCTCCAAGTCTGCTCCGTCTGTGAAGAACAAG 1229
||| |||||||| ||| ||||| ||||||||||||||||||
Sbjct 845 CTCGTGACCTCTGCAATTCTGCGCCGTCTGTGAAGAACAAG 885
Score = 512 bits (277), Expect = 2e-144
Identities = 800/1029 (78%), Gaps = 130/1029 (13%)
Strand=Plus/Plus
Query 259 ATGAAGTTTTCTAAAGGCATAAG-CAATTATTCTTGTAGTTATGCCTCTGGTTTGATTTA 317
||| |||| |||||||| ||||| | | || |||||| ||||||||||||||||| ||
Sbjct 1156 ATGGAGTTGTCTAAAGGGATAAGCCGA-TACAATTGTAGCTATGCCTCTGGTTTGATCTA 1214
Query 318 TTTTGATGGTATGTGCATCCGAAAG-GAGGATGAGGATGCAAAGCATGT-TTTATGTGAC 375
|| | || ||||||| ||| |||||||||||| ||||| ||| || ||| ||
Sbjct 1215 --TT-A---TA---GCATCCG-AAGCAAGGATGAGGATGAAAAGCGTGTGATT-TGTAAC 1263
Query 376 CCTCTCACAGGAAAGTATGTGATCTTACCTGAACTTAGAGTAGGTGATTCGTATAGC--T 433
|| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1264 CCCCTCACAGGACAGTATGTGATCTTACCTGAACTTAGAGTAGGTCATTCGTATAGCTAT 1323
Query 434 ---A--TTTAG--------GGTTTGATCCAG-TTGATAAGGAATTCAAGGTATTGTTCAT 479
| ||||| ||||||||| | | || |||||||||||||||||||||||
Sbjct 1324 ACAATGTTTAGCTATTTAATGTTTGATCC-GATAGACAAGGAATTCAAGGTATTGTTCAT 1382
Query 480 G-A-C-TACTCGTAATAATATAGCTTGGAAGGATCTAGATCATTATATTCTGACATTGGG 536
| | | || |||| | ||| ||||| || || |||||||||||||| ||||| ||||
Sbjct 1383 GAACCTTAATCGT--T-ATACAGCTTATAATTATGTAGATCATTATATTTTGACACTGGG 1439
Query 537 AACTGGGGAATTGAAATGGAGGAGGATCCGATGTGCTTTTACCCATGAGCCTGTGTG-GG 595
||||||| |||||| ||||||| ||||| |||| |||||||||||||| || | || ||
Sbjct 1440 AACTGGGAAATTGAGGTGGAGGAAGATCCAATGTCCTTTTACCCATGAG-CTTTTTGAGG 1498
Query 596 AAAGGATTTGTATCAATGGAGTTTTGTATTACTCAGCT----A---TGAATTCTGATGG- 647
|||||| || || |||||||||||||||||||||||| | || ||||||||||
Sbjct 1499 GAAGGATATGCATTAATGGAGTTTTGTATTACTCAGCTGAACATTCTG-ATTCTGATGGA 1557
Query 648 A-AA----TTATGTGATAGTTTGTTTTGATGTTA--T--------TTCAAGCTCGTTGAC 692
| || || |||| ||||||| |||||||||| | |||||| || | | |
Sbjct 1558 AGAAGGTCTTGTGTGTTAGTTTGCTTTGATGTTAGGTCCGAGAAATTCAAGTTCATAGGC 1617
Query 693 GC-AGAATGCCGTTCTAGATTTAATGGA-TTGATAAACTATAAGGGGAAATTATGTGGGA 750
|| |||| | | || | || || | |||||||||||||||| |||||||||| ||
Sbjct 1618 GCAAGAA-ACTG-TC---A-TT-AT-CAGCTGATAAACTATAAGGGAAAATTATGTGAGA 1669
Query 751 TTATTTTGGAGTATGCTAGTCATGATGGTGGATCTACCGTTAAGTTGAGTATGTGGGTTT 810
||| | ||||||||||| | |||||||| ||| | || ||||||||||||||||||
Sbjct 1670 TTAATGTGGAGTATGCT--T-ATGATGGTAGATTTCCCCCCAAGTTGAGTATGTGGGTTC 1726
Query 811 TAGAGGATGTCGAGAAACCGGAATGGTCGAAACATGTCTACTCGTTGTGGACG--GAGAG 868
|||||||||||||||||||||||||||||||| |||| ||||| || |||| | |||||
Sbjct 1727 TAGAGGATGTCGAGAAACCGGAATGGTCGAAATATGTGTACTC-TT-TGGATGTTGAGAG 1784
Query 869 TCAAGTCGTTAAGGTTAACCATAATCTTT-CTGTTTCTGGGATGACTGCTACCGGTGACA 927
| |||| | | | | || ||||| | ||||||||||||||||||||||||||||
Sbjct 1785 TAAAGTTGCCA-G-----C--TA-TCTTTAC-GTTTCTGGGATGACTGCTACCGGTGACA 1834
Query 928 TTGTTTTGTCGACA-A-AATATGCATCTCAGCCGTTTTATGTTTTCTACTTCAATCCAGA 985
||||||||| || | || | ||||| | || |||||||| |||||||||||||| ||
Sbjct 1835 TTGTTTTGTTGATGGATAACA--CATCTAACCCTTTTTATGTCTTCTACTTCAATCCGGA 1892
Query 986 AAGGAAAACTCTGCAAGTCCCAAGTGTTGAAGTCGAGGGTC-TTGGA-GCTAATCGTGCT 1043
|||||||||||| ||| | ||||||| || | || | ||||| | |||||||| |
Sbjct 1893 AAGGAAAACTCTTCAAAT------TGTTGAAATCCAAGG-CATTGGAAG-TAATCGTG-T 1943
Query 1044 TGCATGTCTTATTACGCCTTTGCT-GACTATGTAGAGGATCTTAGTGTTAACGATGCAGT 1102
| || | | | | |||| | |||||||||||||||||||||||||||| |||| |
Sbjct 1944 T---TG-C--A---C-C-TTTG-TAGACTATGTAGAGGATCTTAGTGTTAACGTTGCACT 1991
Query 1103 GCGACAACTCAAGTCAAGCCCTTTACAACAACAAGGCCAAAATATCGTTACCAAGAGGCC 1162
|| | ||| |||||||||||||||||| ||| | || |||||||||||| ||| ||
Sbjct 1992 GCAA-AAC--AAGTCAAGCCCTTTACAAGAAC--G-CCGAAATATCGTTACGGAGAAGCT 2045
Query 1163 -AAAACCACGACAAGGCCAAG-ATACATCTCATGACCTCTCCAAGTCTGCTCCGTCTGTG 1220
||||| || |||| ||| | |||||||||||||||||| ||||| ||| |||||||||
Sbjct 2046 TAAAAC-ACAACAACGCCG-GCATACATCTCATGACCTCTGCAAGTTTGCCCCGTCTGTG 2103
Query 1221 AAGAACAAG 1229
|||||||||
Sbjct 2104 AAGAACAAG 2112
> Ahg922215 jgi|Araly1|922215|scaffold_103496.1
Length=956
Score = 416 bits (225), Expect = 2e-115
Identities = 488/608 (80%), Gaps = 46/608 (8%)
Strand=Plus/Plus
Query 422 ATTCGTATAGCTATTTAGGGTTTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATGA 481
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 185 ATTCGTATAGCTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTATTGTTCATGA 244
Query 482 CTACTCGT-AATAATATAGCTTGGAAG-GATCTAGATCATTATATTCTGACATTGGGAAC 539
|||| || ||| |||||||| || ||| |||||||||||||| ||||| | |||||
Sbjct 245 ATACTAGTAAAT-TTATAGCTT-CTAGTGATATAGATCATTATATTTTGACACTAGGAAC 302
Query 540 TGGGGAATTGAAATGGAGGAGGATCCGATGTGCTTTTACCCATGAGCCTGTGTGGGAA-A 598
|||| |||||| ||||||| ||||| |||| ||||||||||| | ||| | | |||| |
Sbjct 303 TGGGAAATTGAGGTGGAGGAAGATCCAATGTCCTTTTACCCATAACCCT-TTTTGGAATA 361
Query 599 GGATTTGTATCAATGGAGTTTTGTATTACTCAGCTATGAATTCTG-ATGGAA--ATTATG 655
||||||| |||||||| ||||||||||||| ||| | |||||| | | || ||||||
Sbjct 362 GGATTTGCATCAATGGGGTTTTGTATTACTTAGC--T-CATTCTGAAAGAAAGTATTATG 418
Query 656 TGATAGTTTGTTTTGATGTT--A--T------TTCAAGCTCGTTG-AC-GCA--GAATGC 701
| ||||||| ||||||||| | | ||||||||||||| || || | ||
Sbjct 419 CGGTAGTTTGCTTTGATGTTAGATCTGAGAAATTCAAGCTCGTTGAACTACACCGTTTG- 477
Query 702 CG-TT-CTAGAT-TTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGATTATTTTG 758
| || || | | || ||||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 478 -GATTGCT-G-TCTTTATGGACTGATAAACTATAAGGGGAAATTATGTGGGGTTAATTTG 534
Query 759 GAGTATGCTAGTCATGATGGTGGATCTACCGTTAAGTTGA-GTATGTGGGTTTTAGAGGA 817
|||||||| || ||||||||||| | || || |||| | ||||||||||| |||||||
Sbjct 535 AAGTATGCT--TC-TGATGGTGGATTTCCCCTTGAGTT-ACGTATGTGGGTTCTAGAGGA 590
Query 818 TGTCGAGAAACCGGAATGGTCGAAACATGTCTACTCGTTGTGG-ACGGAGAGTCAAGTCG 876
|||||||||| ||||||| ||| | ||| |||| | ||| || | | ||| | || |||
Sbjct 591 TGTCGAGAAAGAGGAATGGACGACATATGCCTACACTTTGAGGGATG-AGAATAAACTCG 649
Query 877 TTAAGGTTAACCATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTG- 935
||||||||||| | |||||||| ||| ||||| |||||||| | ||||| |||||||||
Sbjct 650 TTAAGGTTAACTACAATCTTTCCGTTGCTGGGGTGACTGCTTCAGGTGAAATTGTTTTGG 709
Query 936 TCGACAA-AATATGCATCTCAGCCGTTTTATGTTTTCTACTTCAATCC-AGAAAGGAAAA 993
| ||| | |||| ||| | | ||||| |||||||||||||| ||||| | ||||||| |
Sbjct 710 TGGACCATAATA--CATGTAAACCGTTCTATGTTTTCTACTTTAATCCCA-AAAGGAACA 766
Query 994 CTCTGCAA 1001
|||| |||
Sbjct 767 CTCTCCAA 774
> Ahg336209 jgi|Araly1|336209|fgenesh1_pg.C_scaffold_1002774
Length=645
Score = 313 bits (169), Expect = 3e-84
Identities = 266/312 (85%), Gaps = 9/312 (3%)
Strand=Plus/Plus
Query 328 ATGTGCATCCGAAAGGAGGATGAGGATGCAAAGCATGTTTTATGTGACCCTCTCACAGGA 387
||| |||||| |||||| ||||| |||| ||||| ||| |||||||||||||||||||||
Sbjct 1 ATGCGCATCCCAAAGGAAGATGAAGATGAAAAGCGTGTGTTATGTGACCCTCTCACAGGA 60
Query 388 -AAGTATGTGATCTTACCTGAACTTAGA-GT-AGGT-G-ATTCGTATAGCTATTTAGGGT 442
|| ||||| |||||||||||||||||| || | | | |||||||||||||||||||||
Sbjct 61 CAA-TATGTTATCTTACCTGAACTTAGAGGTCA-CTCGTATTCGTATAGCTATTTAGGGT 118
Query 443 TTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATGACTACTCGTAATAATATAGCTT 502
||||||| |||||||||||||||||||| |||||||||| |||| || || ||| ||||
Sbjct 119 TTGATCCGGTTGATAAGGAATTCAAGGTGTTGTTCATGAATACTAGTGATTTTATGGCTT 178
Query 503 GGAAGGAT-CTAGATCATTATATTCTGACATTGGGAACTGGGGAATTGAAATGGAGGAGG 561
|| || | ||||||| ||||| ||||| | ||| |||| |||||||||||||||| |
Sbjct 179 ATAATTATAC-AGATCATCATATTTTGACACTAGGAGCTGGAGAATTGAAATGGAGGAAG 237
Query 562 ATCCGATGTGCTTTTACCCATGAGCCTGTGTGGGAAAGGATTTGTATCAATGGAGTTTTG 621
|||| |||| ||||||| ||||||||| | ||||||||||| || || ||||| ||||||
Sbjct 238 ATCCAATGTCCTTTTACACATGAGCCTTTTTGGGAAAGGATATGCATTAATGGGGTTTTG 297
Query 622 TATTACTCAGCT 633
||||||||||||
Sbjct 298 TATTACTCAGCT 309
Score = 289 bits (156), Expect = 4e-77
Identities = 241/281 (86%), Gaps = 9/281 (3%)
Strand=Plus/Plus
Query 772 ATGATGGTGGATCTACCGTTAAGTTGA-GTATGTGGGTTTTAGAGGATGTCGAGAAACCG 830
|||||||||||| | || || |||| | ||||||||||| |||| |||||| | ||||||
Sbjct 368 ATGATGGTGGATTTCCCCTTGAGTT-ACGTATGTGGGTTCTAGAAGATGTCCATAAACCG 426
Query 831 GAATGGTCGAAACATGTCTACTCGTTG-TGGACGGAGAGTCAAGTCGTTAAGGTTAAC-C 888
|||||||||||| |||||||| | ||| ||| || | | ||||||||||||||||| |
Sbjct 427 GAATGGTCGAAATATGTCTACACTTTGAGGGA-TGATAATAAAGTCGTTAAGGTTAACTC 485
Query 889 ATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGA-CAAAATAT 947
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 486 -TAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGTTCAAG-TAT 543
Query 948 GCATCTCAGCCGTTTTATGTTTTCTACTTCAATCCAGAAAGGAAAACTCTGCAAGTCCCA 1007
|||||| | |||| |||||||||||||||||||| |||||||| ||||| ||||||| |
Sbjct 544 GCATCTAATCCGTATTATGTTTTCTACTTCAATCTGGAAAGGAACACTCTCCAAGTCCAA 603
Query 1008 AGTGTTGAAGTCGAGGGTCTTGGAGCTAATCGTGCTTGCAT 1048
||||||||| || | ||||||| ||||||||||| | ||||
Sbjct 604 AGTGTTGAA-TCCAAGGTCTTGAAGCTAATCGTGATCGCAT 643
> Ahg922295 jgi|Araly1|922295|scaffold_103576.1
Length=930
Score = 91.6 bits (49), Expect = 1e-17
Identities = 390/544 (72%), Gaps = 66/544 (12%)
Strand=Plus/Plus
Query 493 AATATAGCTTGGAA-GGATCTAGATCATT-ATATTCTGACATTGGGAACTGGGGAATTGA 550
||||||| ||| || ||| | | | ||| ||||| ||||||| | || ||| || |||
Sbjct 175 AATATAGTTTGTAATGGAAC--GCTTATTGATATTTTGACATTAGAAAGTGGAAAAATGA 232
Query 551 AATGGAGGAGGATCCGATGTGCTTTTACCCATGA-GCCTGTGTGGGAAAGGATTTGTATC 609
||||||| |||| | ||| | || ||||| || | ||| | ||| |||| || |||
Sbjct 233 GGTGGAGGAAGATCTGTTGTCCCTTAACCCACGAGGTTTGT-TTTGAACGGATATGCATC 291
Query 610 AATGGAGTTTTGTATTACTCA-GCTATGAATTCTGATGGAA-A---TTATGTGATAGTTT 664
||||||||||||||||||| | | || || ||||| ||| | ||||||| ||| ||
Sbjct 292 AATGGAGTTTTGTATTACTTAGGTTA-CAAAACTGAT-GAAGAGTCTTATGTGGTAGCTT 349
Query 665 GTTTTGATG-T---TAT------TTCAAGCTCGTTGACGCAGAATGCCGTT---CTAGAT 711
| ||||||| | ||| |||||| | | || ||| |||| | || | |||
Sbjct 350 GCTTTGATGTTAGGTATGAGGAATTCAAGTTTATAGATGCAAAATG-CATTGGGCGAGA- 407
Query 712 TTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGATTATTTTGGAGTATGCTAGTC 771
| | ||||||| ||||||||||| |||||| ||||| | || || | || |||
Sbjct 408 -GACTAGATTGATTAACTATAAGGGTAAATTAGGTGGG---A--TT-GA-T-TG--GGTC 456
Query 772 ATGATGGTGGATCTACCGTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGAAACCGG 831
| | || || | |||| | ||||| |||||||||||||||||||||||||||||| |
Sbjct 457 A--AAGGAGG-T-AACCG-TGAGTTGTGTATGTGGGTTTTAGAGGATGTCGAGAAACAAG 511
Query 832 AATGGTCGAAACATGTCTACTCGTTGTGGACGGAGAGTCAAGTCGTTAAG-G-TTAACCA 889
||||||||||| |||| ||| | || || | |||| | ||||| | || | || | |
Sbjct 512 AATGGTCGAAATATGTTTACAC-TT-TGC-CAGAGAATGAAGTCCT-AATTGATTTAT-A 566
Query 890 TAA-TCTTTCTGTTTCTGG-GATGACTGCTACCGGTGACA-TTGTTTTGTCGACAAAATA 946
|| | | |||| |||| | |||| |||| ||||| | |||||||||||| ||||
Sbjct 567 CAAGTATAA-TGTTGCTGGAG-TGACGGCTAGAGGTGA-AGTTGTTTTGTCGAGGAAATT 623
Query 947 TGCA--TCTCAG--C--C---GTTTTATGTTTTCTACTTCAATCCAGAAAGGAAAACTCT 997
|||| | | | | | |||||||||||||| ||||||||| |||| ||| |||||
Sbjct 624 TGCAGATATGTGGTCGTCACAGTTTTATGTTTTCTTCTTCAATCCCGAAAAGAACACTCT 683
Query 998 GCAA 1001
|||
Sbjct 684 CCAA 687
> Ahg922296 jgi|Araly1|922296|scaffold_103577.1
Length=1162
Score = 58.4 bits (31), Expect = 1e-07
Identities = 45/51 (88%), Gaps = 3/51 (6%)
Strand=Plus/Plus
Query 1071 TATGTAGAGGATCTTAGTGTTAACGATGCAGTGCGACAACTCAAGTCAAGC 1121
|||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 825 TATGTAGAGGATCTTAGTGTTAACGATGCAAA---ACAACTCAATTCAAGC 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5