BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30950.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922193 jgi|Araly1|922193|scaffold_103474.1 2126 0.0
> Ahg922193 jgi|Araly1|922193|scaffold_103474.1
Length=1375
Score = 2126 bits (1151), Expect = 0.0
Identities = 1270/1327 (96%), Gaps = 10/1327 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCAACTGTGTTCATCAATAACCCATCTTTAACCTTACCTTTCTCTTACACATTT 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 21 ATGGATTCAAATGTGTTCATCAATAACCCATCTTTAACCTTACCTTTCTCTTACACCTTT 80
Query 61 ACCAGTAGCAGCAACAGTAGCACAACAACGAGCACCACCACAGACTCAAGCTCCGGTCAA 120
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 81 ACCAGTAGCAGCAACAGTAGCACAACCACAAGCACCACCACAGACTCAAGCTCCGGTCAA 140
Query 121 TGGATGGACGGTCGGATTTGGAGCAAGCTACCACCTCCTCTTCTTGACCGCGTCATTGCT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 141 TGGATGGACGGTCGGATTTGGAGCAAGCTACCACCTCCACTTCTTGACCGCATCATCGCT 200
Query 181 TTTCTTCCACCTCCGGCGTTTTTCCGGACACGTTGCGTCTGCAAGAGATTCTACAGTCTA 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TTTCTTCCACCTCCCGCGTTTTTCCGGACACGTTGCGTCTGCAAGAGATTCTACAGTCTA 260
Query 241 CTTTTCTCCAACACCTTCCTCGAGACATATCTACAACTACTTCCTCTCCGACACAACTGT 300
|||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 261 CTTTTCTCCAACGCGTTCCTCGAGACATATCTACAACTACTTCCTCTCGGACACAACTGT 320
Query 301 TTCCTCTTCTTCAAACACAAAACCCTAAAGAGTTACATTTAC-A-AGA-GAGGAGGAACA 357
|||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||
Sbjct 321 TTCCTCTTCTTCAAACACAAAACCCTAAAGAGCTACATTTACAAGAGAGGAGGAGGAACA 380
Query 358 AACGATGATGATTCCAATAAAGCTGAAGGCTTTTTGTTTGATCCTAATGAGATCCGATGG 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AACGATGATGATTCCAGTAAAGCTGAAGGCTTTTTGTTTGATCCTAATGAGATCCGATGG 440
Query 418 TACCGTCTCTCTTTTGCTTATATCCCTTCAGGGTTTTATCCTTCAGGATCATCAGGAGGG 477
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 441 TACCGTCTCTCTTTTGCTTATATCCCTTCAGGGTATTATCCTTCTGGATCATCAGGAGGG 500
Query 478 TTAGTGAGTTGGGTCTCCGAAGAAGCTGGTCTTAAAACCATTCTCTTGTGTAACCCTCTT 537
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 501 TTAGTGAGTTGGGTCTCCGAAGAAGCTGGTCTTAAAACCATTCTCTTATGTAACCCTCTT 560
Query 538 GTCGGATCCGTGAGTCAGTTGCCACCAATATCAAGGCCAAGGCTTTTCCCTTCGATAGGT 597
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 561 CTTGGATCCGTGAGTCAGTTGCCACCAATTTCAAGACCAAGGCTTTTCCCTTCGATAGGT 620
Query 598 CTCTCGGTAACACCAACCTCTATTGATGTTACTGTCGCTGGAGATGATCTCATATCTCCT 657
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 621 CTCTCAGTAACACCAACCTCTATTGATGTTACTGTCGCTGGAGACGATCTCATATCTCCT 680
Query 658 TACGCTGTGAAAAACCTCTCATCGGAGAGTTTCCATGTCGACGCCGGCGGATTCTTTTCC 717
||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||
Sbjct 681 TACGCCGTGAAAAACCTCTCCTCGGAAAGTTTCCATGTTGACGCAGGCGGATTCTTCTCC 740
Query 718 CTCTGGGCGATGACTTCTTCTTTGCCACGGCTTTGTAGCTTGGAATCTGGTAAGATGGTT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTCTGGGCGATGACTTCTTCTTTGCCACGGCTTTGTAGCTTGGAATCTGGTAAGATGGTT 800
Query 778 TACGTGCAAGGCAAGTTTTACTGTATGAACTATAGCCCTTTTAGCGTTTTGTCCTATGAA 837
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 801 TACGTGCAAGGCAAGTTTTACTGTATGAACTATAGTCCTTTTAGCGTTTTGTCCTATGAG 860
Query 838 GTTACTGGAAACCGGTGGATCAAGATTCAAGCTCCGATGAGGAGATTTCTCAGATCTCCA 897
||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct 861 GTTACTGGAAACCGGTGGATCAAGATTCAAGCTCCCATGAGGAGGTTTCTCCGATCTCCA 920
Query 898 AGCTTGTTAGAGAGCAAAGGGAGGCTTATTCTTGTAGCAGCTGTTGAGAAAAGCAAG-TT 956
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 921 AGCTTGTTAGAGAGCAAAGGGAGGCTTATTCTTGTAGCAGCCGTTGAGAAAAGCAAGCTT 980
Query 957 GAACGTTCCCAAAAGCC-TACGACTTTGGAGTTTGCAACAAGATAACGCCACATGGGTCG 1015
|||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||
Sbjct 981 -AACGTTCCCAAAAGCCTTA-GGCTTTGGAGTTTGCAACAAGATAACGCCACGTGGGTCG 1038
Query 1016 AGATCGAACGGATGCCTCAGCCGCTCTACACACAGTTTGCAGCAGAAGAAGGTGGAAAAG 1075
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1039 AGATTGAACGGATGCCTCAGCCGCTCTACACACAGTTTGCAGCTGAAGAAGGCGGAAAAG 1098
Query 1076 GATTCGAGTGTGTCGGAAATCAAGAGTTTGTAATGATTGTGTTAAGAGGAACCTCGTTGC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 GATTCGAGTGTGTCGGAAATCAAGAGTTTGTAATGATTGTGTTAAGAGGAACCTCGTTGC 1158
Query 1136 AGTTGCTGTTTGATATAGTGAGAAAAAGCTGGCTGTGGGTCCCACCGTGTCCTTACTCCG 1195
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 AGTTGCTGTTTGATATGGTAAGAAAAAGCTGGCTGTGGGTCCCACCGTGTCCTTACTCCG 1218
Query 1196 GCAGTGGTGGCGGTAGCTCAGGTGGCGGTTCAGACGGAGAGGTCTTGCAGGGTTTTGCTT 1255
|| |||||||| || ||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 1219 GCTGTGGTGGCAGTGGCTCAGG---CGGTTCAGACGGTGAGGTGTTGCAGGGTTTTGCTT 1275
Query 1256 ATGACCCGGTGCTTACTACACCGGTGGTTAGTCTTCTTGATCAGTTAACACTTCCATTTC 1315
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 ATGACCCGGTACTTACTACACCGGTGGTTAGTCTTCTTGATCAGTTAACACTTCCATTTC 1335
Query 1316 CTGGAGT 1322
|||||||
Sbjct 1336 CTGGAGT 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5