BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30960.1
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922194 jgi|Araly1|922194|scaffold_103475.1 2089 0.0
> Ahg922194 jgi|Araly1|922194|scaffold_103475.1
Length=1350
Score = 2089 bits (1131), Expect = 0.0
Identities = 1283/1355 (95%), Gaps = 16/1355 (1%)
Strand=Plus/Plus
Query 43 CCATTGTTACAAAAATGAAAGCTTTTAGATCTCTACGTATACTAATTTCCATCTCACGAA 102
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 7 CCATTGTTGCAAAAATGAAAGCTTTTAGATCTCTACGTATACTAATTTCCATCT--C--A 62
Query 103 CGACGACGAAGACAACACCTC-GTAATCCCCATCAAGCACAAAACTTTCTCCGCCGATTT 161
||| || | |||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 63 CGA--AC--A-ACAACACCTCACAAAT-CCCATCAAGCTCAAAACTTTCTCCGCCGATTT 116
Query 162 TACTCAGCGCAGCCGAATCTAGACGAACCCACTTCCATCAATGAAGACGGATCAAGCAGC 221
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 117 TACTCAGCGCAGCCGAATCTAGACGAACCCACTTCCGTCAACGAAGACGGAACAAGCAGC 176
Query 222 GACTCTGTTTTCGATAGTAGTCAATACCCAATCGACGATTCCAATGTAGATTCCGTGAAG 281
||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||
Sbjct 177 GACTCTGTTTTCGATAGTAGTCAATACCCAATCGAAGATTCCCATGGAGATTCTGTGAAG 236
Query 282 AAGCCCAAGGAAGCAACTTGGGATAAAGGGTACAGAGAAAGAGTAAACAAAGCCTTCTTT 341
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 237 AAGCCCAAGGAAGCAACTTGGGATAAAGGGTACAGAGAAAGAGTGAACAAAGCCTTCTTT 296
Query 342 GGAAACTTGACAGAGAAAGGTAAAGTGAAAGTTGCAGAAGAAGAGAGTTCTGA--A-GAT 398
|||||||||||||||||||||||| |||||||||||||||||| ||| ||||| | |||
Sbjct 297 GGAAACTTGACAGAGAAAGGTAAATTGAAAGTTGCAGAAGAAGTGAGCTCTGATGATGAT 356
Query 399 GATGAGGATAGTGTTGATAGGTCAAGGATTCTCGCTAAGGCTCTCTTAGAGGCTGCGTTA 458
||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 357 GATGAGGATAGTGTTGATAGGTCTAGGATTCTCGCTAAGGCTCTGTTAGAGGCGGCGTTG 416
Query 459 GAGTCACCAGATGAAGAACTTGGTGAAGGTGAAGTTAGAGAAGAAGATCAGAAGTCGCTT 518
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 GAGTCACCTGATGAAGAACTTGGTGAAGGTGAAGTTAGAGAAGAAGATCAGAAGTCTCTT 476
Query 519 AATGTCGGCATCATCGGTCCACCTAATGCAGGAAAATCTTCGCTGACTAATTTCATGGTT 578
|||||||| |||||||||||||| || || || ||||| |||||||||||||||||||||
Sbjct 477 AATGTCGGTATCATCGGTCCACCGAACGCCGGGAAATCGTCGCTGACTAATTTCATGGTT 536
Query 579 GGAACAAAGGTTGCTGCTGCTTCACGGAAGACTAACACGACGACACATGAAGTGTTAGGA 638
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 537 GGAACAAAGGTTGCTGCTGCTTCACGGAAGACTAACACGACGACTCATGAAGTGTTAGGA 596
Query 639 GTATTGACAAAAGGAGATACACAAGTCTGTTTCTTCGATACTCCGGGTCTGATGCTGAAG 698
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTATTGACAAAAGGGGATACACAAGTCTGTTTCTTCGATACTCCGGGTCTGATGCTGAAG 656
Query 699 AAAAGCGGATATGGTTACAAAGACATCAAGGCTCGTGTGCAAAATGCTTGGACTTCTGTT 758
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 657 AAAAGCGGATATGGTTACAAAGATATTAAATCTCGTGTGCAAAATGCTTGGACTTCTGTT 716
Query 759 GACCTGTTTGATGTCCTCATTGTTATGTTTGATGTCCATAGGCATCTCATGAGTCCCGAT 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GACCTGTTTGATGTCCTCATTGTTATGTTTGATGTCCATAGGCATCTCATGAGTCCCGAT 776
Query 819 TCAAGAGTGGTACGCTTGATCAAATACATGGGAGAAGAAGAAAATCCGAAACAAAAGCGC 878
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 TCAAGAGTGGTACGCTTGATCAAATACATGGGCGAAGAAGAAAATCCGAAACAAAAGCGC 836
Query 879 GTTTTATGTATGAACAAAGTTGATCTGGTTGAGAAGAAAAAGGATCTATTAAAGGTTGCT 938
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 837 ATTTTATGTATGAACAAAGTTGATCTGGTTGAGAAGAAAAAGGATCTGTTAAAGGTTGCT 896
Query 939 GAGGAGTTCCAAGATCTTCCGGCATATGAAAGATACTTCATGATATCGGGACTTAAGGGA 998
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 897 GAGGAGTTCCAAGATCTTCCGGCATATGAAAGGTACTTCATGATATCTGGACTTAAGGGA 956
Query 999 TCAGGAGTGAAAGATCTTTCCCAATACTTAATGGATCAGGCTGTTAAAAAACCATGGGAA 1058
|||||||| |||| |||| |||||| |||||||||||||| || |||||||||||||||
Sbjct 957 TCAGGAGTTAAAGGTCTTAGCCAATATTTAATGGATCAGGCAGTAAAAAAACCATGGGAA 1016
Query 1059 GAAGATGCATTCACGATGAGTGAAGAAGTCTTGAAGAACATTTCTCTTGAAGTTGTTAGG 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GAAGATGCATTCACGATGAGTGAAGAAGTCTTGAAGAACATTTCTCTTGAAGTTGTTAGG 1076
Query 1119 GAGAGATTACTAGACCATGTCCATCAGGAAATACCATATGGTC-TGGAGCACCGTCTAGT 1177
|||||||||||||||||||| ||||||||||| |||||||| | | ||||||||||||||
Sbjct 1077 GAGAGATTACTAGACCATGTTCATCAGGAAATCCCATATGG-CGTCGAGCACCGTCTAGT 1135
Query 1178 GGACTGGAAAGAGCTGCGTGACGGGTCTCTTAGAATTGAACAGCATCTCATCACTCCTAA 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GGACTGGAAAGAGCTGCGTGACGGGTCTCTTAGAATTGAACAGCATCTCATCACTCCTAA 1195
Query 1238 ACTTAGCCAACGCAAGATTCTTGTAGGCAAGGGCGGTTGCAAGATCGGGAGGATAGGAAT 1297
|| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1196 ACCTAGCCAACGCAAGATTCTTGTAGGCAAGGGCGGTTCCAAGATTGGGAGGATAGGAAT 1255
Query 1298 TGAGGCCAATGAAGAACTCAGGAGAATAATGAACCGCAAAGTTCATCTCATTCTCCAGGT 1357
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1256 TGAGGCAAATGAAGAACTCAGGAGAATAATGAACCGAAAAGTTCATCTCATTCTCCAGGT 1315
Query 1358 TAAGCTCAAGTGAAACCATTCTCCCAAGGGTTATG 1392
|||||||||||||||||||||||| ||| |||||
Sbjct 1316 TAAGCTCAAGTGAAACCATTCTCCGAAGAATTATG 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5