BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30970.1 Length=1594 Score E Sequences producing significant alignments: (Bits) Value Ahg473343 jgi|Araly1|473343|fgenesh2_kg.1__3297__AT1G30970.1 2364 0.0 > Ahg473343 jgi|Araly1|473343|fgenesh2_kg.1__3297__AT1G30970.1 Length=1559 Score = 2364 bits (1280), Expect = 0.0 Identities = 1500/1597 (94%), Gaps = 52/1597 (3%) Strand=Plus/Plus Query 1 GAATCTGAAGATCGTAGAAGAAATCG-AGAAAACGCTTTGTACCAATTAGAAACCCTAGC 59 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1 GAATCTGAAGATCGTAGAAGAAATCGAAG-AAACGCTTTGTACCAATTAGAAACCCTAGC 59 Query 60 GAGCGGAGGAAGGAGACAAAGAACGAGACTTT-TGAGA-GATTG-GAGATTTCAATTTTG 116 |||||||||||||||||||||||||||||||| |||| || | |||||||||| || Sbjct 60 GAGCGGAGGAAGGAGACAAAGAACGAGACTTTGAGAGACGAGAGAGAGATTTCAA--TT- 116 Query 117 AGATCAAATCTTGAAATCAACAAATAGGAGAAAGATTTAGTGATGGGTAAGAAGAAGAAG 176 || |||| ||||||||| | ||| ||||||| ||||||||||||||||||||||||| Sbjct 117 AG----AATCGTGAAATCAATACATAAGAGAAAGGTTTAGTGATGGGTAAGAAGAAGAAG 172 Query 177 AGAGCTACAGAGAAGGTGTGGTGTTATTACTGCGATAGAGAGTTTGATGATGAGAAGATT 236 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 173 AGAGCTTCAGAGAAGGTGTGGTGTTATTACTGCGACAGAGAGTTTGATGATGAGAAGATT 232 Query 237 CTTGTGCAGCATCAGAAAGCTAAGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 CTTGTGCAGCATCAGAAAGCTAAGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCT 292 Query 297 ACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAAGTT 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 293 ACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAGGTT 352 Query 357 CCTAATGCTAAAGACGG-TCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAAT 415 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 353 CCTAATGCTAAA-ACGGGTCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAAT 411 Query 416 TCCACCCCATGTCTTGACTGCTCATTATGGAGAAGAAGAGGATGAGCCTCCAGCCAAAGT 475 ||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||| Sbjct 412 TCCACCCGATGTCTTGGCTGCTCATTACGGAGAAGAAGAGGAAGAGCCTCCAGCCAAAGT 471 Query 476 TGCAAAAGTTGAGATTCCTTCTGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAAT 535 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 472 TGCAAAAGTTGAGATTCCGTCCGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAAT 531 Query 536 GGTATATCCGCCTCAACAAGTACCTGGTGCTGTACCTGCACGACCAATGTATTATCCGGG 595 ||||||||||||||||||||| |||||||||| | |||||||||||||||||| || Sbjct 532 GGTATATCCGCCTCAACAAGTTCCTGGTGCTG--C----ACGACCAATGTATTATCCTGG 585 Query 596 TCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCGCAACAATG 655 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 586 TCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCACAACAATG 645 Query 656 GTATCCTCAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACA 715 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 GTATCCACAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACA 705 Query 716 ACCACTTTTTCCTGTTCAAAATATGGGGATGACTCCAACTCCAACCTCAGCTCCTGCCAT 775 ||||||||||||||||||||||||||||||||||| | | | |||||||||||||| | | Sbjct 706 ACCACTTTTTCCTGTTCAAAATATGGGGATGACTC-AGC-C-AACCTCAGCTCCTGTCGT 762 Query 776 ACAACCATCACCAGTCACTGGAGTAACTCCTCCTGGAATTCCTACATCATCACCTGCAAT 835 |||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||| Sbjct 763 ACAACCTTCACCAGTCACTGGAGTAACTCCTCTTGGGATTCCTTCATCATCACCTGCAAT 822 Query 836 GCCAGTTCCTCAACCTCTGTTCCCTGTTGTGAATAACAGCATTCCTTCTCAAGCTCCACC 895 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 823 GCCGGTTCCTCAACCTCTGTTCCCTGTTGTGAATAACAGCATTCCTTCTCAAGCTTCACC 882 Query 896 ATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCATCTCATGCAGATGCTTTAGG 955 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 883 ATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCGTCTCATGCAGATGCTTTAGG 942 Query 956 ATCAGCAGATGCTTATCCGCCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTA 1015 ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 943 ATCAGCAAATGCTTATCCACCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTA 1002 Query 1016 TGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAA 1075 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1003 TGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAATAA 1062 Query 1076 AGCTCCTAGCAATCAGCCTAATGAGGTCTATCTTGTATGGGATGATGAAGCGATGTCTAT 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1063 AGCTCCTAGCAATCAGCCTAATGAGGTCTATCTTGTATGGGATGATGAAGCGATGTCTAT 1122 Query 1136 GGAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGATGAA 1195 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1123 GGAGGAAAGAAGAATGGCCTTACCGAAATACAAAGTGCACGATGAAACCAGCCAGATGAA 1182 Query 1196 CTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGC 1255 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1183 CTCAATAAATGCAGCCATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGAATGGC 1242 Query 1256 GTTTTAGAATTTGGCACCAAACCAAACCAGCGTCAAAGAAAAGGCGATATGGATGAAGG- 1314 |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || Sbjct 1243 GTTTTAGAATTTGGCACCAAACCAAACCTGCGTCAAAGAAAAGGCGATATG-ATGGGGGG 1301 Query 1315 CTTTGTTACAACAACAAGTCTTCACTCACTTTTGTTCAGAT----A----CTGAATTTAT 1366 |||||||||||||| ||||||| |||||||||||||||| | |||||||||| Sbjct 1302 CTTTGTTACAACAA---GTCTTCATTCACTTTTGTTCAGATTTTCAGATACTGAATTTAT 1358 Query 1367 GATCTGATTTTAAGTTATTAACTTTCCATCTGTTGTATTCTTTAGCCAGGTGAGTTAGTT 1426 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1359 GATCTGATTTTAAGTTATTA-CTTTCCATCTGTTGTATTCTTTAGCCAGGTGAGTTAGTT 1417 Query 1427 TACCATTACATTGTTTAGGGATCTCAGAGATGTTTTTTCTCAGAAGTTTAGTCCtttttt 1486 | || | |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1418 T----TT---T-----AGGGATGTCAGAGATGTTTTTTCTCAGAAGTTTAGTCCTTTTTT 1465 Query 1487 tttttGGTCGTTGGAGACTTGGAGGAAGAACTTTGTCTCCTTTTCTTCTGAATTGATCAA 1546 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1466 TTT--G-TCGTTGGAGACTTGGAGGAAGAACTTTGTCTCCTTTTCTTCTGAATTGATCAA 1522 Query 1547 AGTATTATATTATACAGATTCACCCAAAATGTTTGCA 1583 |||||||||||||||||||||||||||||| |||||| Sbjct 1523 AGTATTATATTATACAGATTCACCCAAAATATTTGCA 1559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59725504160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5