BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30970.1
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473343 jgi|Araly1|473343|fgenesh2_kg.1__3297__AT1G30970.1 2364 0.0
> Ahg473343 jgi|Araly1|473343|fgenesh2_kg.1__3297__AT1G30970.1
Length=1559
Score = 2364 bits (1280), Expect = 0.0
Identities = 1500/1597 (94%), Gaps = 52/1597 (3%)
Strand=Plus/Plus
Query 1 GAATCTGAAGATCGTAGAAGAAATCG-AGAAAACGCTTTGTACCAATTAGAAACCCTAGC 59
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 GAATCTGAAGATCGTAGAAGAAATCGAAG-AAACGCTTTGTACCAATTAGAAACCCTAGC 59
Query 60 GAGCGGAGGAAGGAGACAAAGAACGAGACTTT-TGAGA-GATTG-GAGATTTCAATTTTG 116
|||||||||||||||||||||||||||||||| |||| || | |||||||||| ||
Sbjct 60 GAGCGGAGGAAGGAGACAAAGAACGAGACTTTGAGAGACGAGAGAGAGATTTCAA--TT- 116
Query 117 AGATCAAATCTTGAAATCAACAAATAGGAGAAAGATTTAGTGATGGGTAAGAAGAAGAAG 176
|| |||| ||||||||| | ||| ||||||| |||||||||||||||||||||||||
Sbjct 117 AG----AATCGTGAAATCAATACATAAGAGAAAGGTTTAGTGATGGGTAAGAAGAAGAAG 172
Query 177 AGAGCTACAGAGAAGGTGTGGTGTTATTACTGCGATAGAGAGTTTGATGATGAGAAGATT 236
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 173 AGAGCTTCAGAGAAGGTGTGGTGTTATTACTGCGACAGAGAGTTTGATGATGAGAAGATT 232
Query 237 CTTGTGCAGCATCAGAAAGCTAAGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CTTGTGCAGCATCAGAAAGCTAAGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCT 292
Query 297 ACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAAGTT 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 293 ACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAGGTT 352
Query 357 CCTAATGCTAAAGACGG-TCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAAT 415
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CCTAATGCTAAA-ACGGGTCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAAT 411
Query 416 TCCACCCCATGTCTTGACTGCTCATTATGGAGAAGAAGAGGATGAGCCTCCAGCCAAAGT 475
||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct 412 TCCACCCGATGTCTTGGCTGCTCATTACGGAGAAGAAGAGGAAGAGCCTCCAGCCAAAGT 471
Query 476 TGCAAAAGTTGAGATTCCTTCTGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAAT 535
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 472 TGCAAAAGTTGAGATTCCGTCCGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAAT 531
Query 536 GGTATATCCGCCTCAACAAGTACCTGGTGCTGTACCTGCACGACCAATGTATTATCCGGG 595
||||||||||||||||||||| |||||||||| | |||||||||||||||||| ||
Sbjct 532 GGTATATCCGCCTCAACAAGTTCCTGGTGCTG--C----ACGACCAATGTATTATCCTGG 585
Query 596 TCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCGCAACAATG 655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 586 TCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCACAACAATG 645
Query 656 GTATCCTCAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACA 715
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GTATCCACAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACA 705
Query 716 ACCACTTTTTCCTGTTCAAAATATGGGGATGACTCCAACTCCAACCTCAGCTCCTGCCAT 775
||||||||||||||||||||||||||||||||||| | | | |||||||||||||| | |
Sbjct 706 ACCACTTTTTCCTGTTCAAAATATGGGGATGACTC-AGC-C-AACCTCAGCTCCTGTCGT 762
Query 776 ACAACCATCACCAGTCACTGGAGTAACTCCTCCTGGAATTCCTACATCATCACCTGCAAT 835
|||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 763 ACAACCTTCACCAGTCACTGGAGTAACTCCTCTTGGGATTCCTTCATCATCACCTGCAAT 822
Query 836 GCCAGTTCCTCAACCTCTGTTCCCTGTTGTGAATAACAGCATTCCTTCTCAAGCTCCACC 895
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 823 GCCGGTTCCTCAACCTCTGTTCCCTGTTGTGAATAACAGCATTCCTTCTCAAGCTTCACC 882
Query 896 ATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCATCTCATGCAGATGCTTTAGG 955
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 883 ATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCGTCTCATGCAGATGCTTTAGG 942
Query 956 ATCAGCAGATGCTTATCCGCCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTA 1015
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 943 ATCAGCAAATGCTTATCCACCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTA 1002
Query 1016 TGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1003 TGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAATAA 1062
Query 1076 AGCTCCTAGCAATCAGCCTAATGAGGTCTATCTTGTATGGGATGATGAAGCGATGTCTAT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AGCTCCTAGCAATCAGCCTAATGAGGTCTATCTTGTATGGGATGATGAAGCGATGTCTAT 1122
Query 1136 GGAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGATGAA 1195
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1123 GGAGGAAAGAAGAATGGCCTTACCGAAATACAAAGTGCACGATGAAACCAGCCAGATGAA 1182
Query 1196 CTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGC 1255
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1183 CTCAATAAATGCAGCCATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGAATGGC 1242
Query 1256 GTTTTAGAATTTGGCACCAAACCAAACCAGCGTCAAAGAAAAGGCGATATGGATGAAGG- 1314
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 1243 GTTTTAGAATTTGGCACCAAACCAAACCTGCGTCAAAGAAAAGGCGATATG-ATGGGGGG 1301
Query 1315 CTTTGTTACAACAACAAGTCTTCACTCACTTTTGTTCAGAT----A----CTGAATTTAT 1366
|||||||||||||| ||||||| |||||||||||||||| | ||||||||||
Sbjct 1302 CTTTGTTACAACAA---GTCTTCATTCACTTTTGTTCAGATTTTCAGATACTGAATTTAT 1358
Query 1367 GATCTGATTTTAAGTTATTAACTTTCCATCTGTTGTATTCTTTAGCCAGGTGAGTTAGTT 1426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GATCTGATTTTAAGTTATTA-CTTTCCATCTGTTGTATTCTTTAGCCAGGTGAGTTAGTT 1417
Query 1427 TACCATTACATTGTTTAGGGATCTCAGAGATGTTTTTTCTCAGAAGTTTAGTCCtttttt 1486
| || | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1418 T----TT---T-----AGGGATGTCAGAGATGTTTTTTCTCAGAAGTTTAGTCCTTTTTT 1465
Query 1487 tttttGGTCGTTGGAGACTTGGAGGAAGAACTTTGTCTCCTTTTCTTCTGAATTGATCAA 1546
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 TTT--G-TCGTTGGAGACTTGGAGGAAGAACTTTGTCTCCTTTTCTTCTGAATTGATCAA 1522
Query 1547 AGTATTATATTATACAGATTCACCCAAAATGTTTGCA 1583
|||||||||||||||||||||||||||||| ||||||
Sbjct 1523 AGTATTATATTATACAGATTCACCCAAAATATTTGCA 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59725504160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5