BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G30972.1

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494685 jgi|Araly1|494685|fgenesh2_kg.8__501__AT1G30972.2          281    4e-75
  Ahg912946 jgi|Araly1|912946|Al_scaffold_0001_3200                    230    2e-59


> Ahg494685 jgi|Araly1|494685|fgenesh2_kg.8__501__AT1G30972.2
Length=365

 Score =  281 bits (152),  Expect = 4e-75
 Identities = 194/214 (91%), Gaps = 4/214 (2%)
 Strand=Plus/Plus

Query  1    ATGGGTGCTAAATGGAATTCAATGATTATAATGGTGTTTGTGGTGACAATGGTTATAGCA  60
            ||||||||||||| ||||| ||||||| |||| |||||||||||||||||||| ||||||
Sbjct  16   ATGGGTGCTAAATTGAATTTAATGATTTTAATAGTGTTTGTGGTGACAATGGTAATAGCA  75

Query  61   ATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCATGAAGATTGCATTCTAGGTTGT  120
            |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct  76   ATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCAAGAAGATTGCATTCAAGGTTGT  135

Query  121  GCCACCACAGGAAGAA-TTCCGATCACGTGCCTTCAGAATTGTTACCGTCGATGTCC-CG  178
            |||||||| ||| | | |||||| || |||||| ||||||||||| ||| |||| || ||
Sbjct  136  GCCACCACCGGA-GCACTTCCGAGCAAGTGCCTCCAGAATTGTTATCGTGGATG-CCGCG  193

Query  179  GCAAACCTCGTCGTACATTAGGTAACCATTTTTC  212
            |||||||| ||||| |||||||||||||||||||
Sbjct  194  GCAAACCTGGTCGTGCATTAGGTAACCATTTTTC  227


 Score = 99.0 bits (53),  Expect = 5e-20
 Identities = 82/94 (87%), Gaps = 9/94 (10%)
 Strand=Plus/Plus

Query  628  AGTGGAAGCGCAGAAATAGAAGAGACGATGAGTCATGAATCAGTGTTGGACTCTTGGGAC  687
            |||||||||||||| |||| | ||| |||  |  |||  |||||||||||||||||||||
Sbjct  238  AGTGGAAGCGCAGACATAG-A-AGA-GAT--G--ATG--TCAGTGTTGGACTCTTGGGAC  288

Query  688  TTTTAAACTAGCTCTTCTTCTACTTTTGTATCCT  721
            ||||||||||||| ||||||||||| ||||||||
Sbjct  289  TTTTAAACTAGCTTTTCTTCTACTTCTGTATCCT  322


> Ahg912946 jgi|Araly1|912946|Al_scaffold_0001_3200
Length=210

 Score =  230 bits (124),  Expect = 2e-59
 Identities = 176/201 (88%), Gaps = 4/201 (2%)
 Strand=Plus/Plus

Query  1    ATGGGTGCTAAATGGAATTCAATGATTATAATGGTGTTTGTGGTGACAATGGTTATAGCA  60
            ||||||||||||| ||||||||||||| || |  |||| ||||| |||||||| ||||||
Sbjct  1    ATGGGTGCTAAATTGAATTCAATGATTTTATTAATGTTCGTGGTAACAATGGTAATAGCA  60

Query  61   ATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCATGAAGATTGCATTCTAGGTTGT  120
            ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGGAAAGTGTCAATGGAGAGACAAAAGCTCAATGCCATGAAGATTGCATTCTAGGTTGT  120

Query  121  GCCACCACAGGAAGAAT-TCCGATCACGTGCCTTCAGAATTGTTACCGTCGATGTCCC-G  178
            |||||||| ||| | |  ||||| || |||||| |||| |||||||||| |||| ||  |
Sbjct  121  GCCACCACCGGA-GCACGTCCGAACATGTGCCTCCAGAGTTGTTACCGTAGATG-CCAAG  178

Query  179  GCAAACCTCGTCGTACATTAG  199
            |||||||| ||||| ||||||
Sbjct  179  GCAAACCTGGTCGTGCATTAG  199



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29392769007


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5