BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G30974.1

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494685 jgi|Araly1|494685|fgenesh2_kg.8__501__AT1G30972.2          292    9e-79


> Ahg494685 jgi|Araly1|494685|fgenesh2_kg.8__501__AT1G30972.2
Length=365

 Score =  292 bits (158),  Expect = 9e-79
 Identities = 206/229 (90%), Gaps = 4/229 (2%)
 Strand=Plus/Plus

Query  48   AAAAAAGTTAAAGATATGGGTGCTAAATGGAATTCAATGATCATAATGGTGTTTGTGGTG  107
            |||||||||||||||||||||||||||| ||||| ||||||  |||| ||||||||||||
Sbjct  1    AAAAAAGTTAAAGATATGGGTGCTAAATTGAATTTAATGATTTTAATAGTGTTTGTGGTG  60

Query  108  ACAATGGTAATAGCAATGGAAAATGTCAATGGAGAGACGAGAGCTCAATGCCATGAAGAT  167
            |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct  61   ACAATGGTAATAGCAATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCAAGAAGAT  120

Query  168  TGCATTACA-GATTGTGCCACCACAGGAATAATTCCGATCAAGTGCCTTCAGAATTGTTA  226
            |||||| || | |||||||||||| |||  | |||||| ||||||||| |||||||||||
Sbjct  121  TGCATT-CAAGGTTGTGCCACCACCGGAGCACTTCCGAGCAAGTGCCTCCAGAATTGTTA  179

Query  227  CCGTCGATGTCC-CGGCAAACCTCGTCGTACATTAGGTCACCATTTTTC  274
             ||| |||| || |||||||||| ||||| |||||||| ||||||||||
Sbjct  180  TCGTGGATG-CCGCGGCAAACCTGGTCGTGCATTAGGTAACCATTTTTC  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12705811137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5