BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30990.1 Length=459 Score E Sequences producing significant alignments: (Bits) Value Ahg912947 jgi|Araly1|912947|Al_scaffold_0001_3201 518 2e-146 > Ahg912947 jgi|Araly1|912947|Al_scaffold_0001_3201 Length=462 Score = 518 bits (280), Expect = 2e-146 Identities = 408/468 (87%), Gaps = 15/468 (3%) Strand=Plus/Plus Query 1 ATGGCGATGTCGGGAACATACATGACGGACGTGCCTCTGAATGGATCGGCCGAGAAACAC 60 |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct 1 ATGGCGATGTCGGGAACATACATGACGGACGTTCCTCTGAAGGGATCGGCGGAGAAACAC 60 Query 61 TACAAGTTGTGGAGTAGCGAGACCCATCGCATCCCTGACACTATCGGCCACCTCATCCAA 120 ||||| |||||||||||||| ||||| | ||||||| | ||||||||||||||||| Sbjct 61 TACAAAAGGTGGAGTAGCGAGAACCATCTCGTCCCTGATGCCATCGGCCACCTCATCCAT 120 Query 121 GGTGTCATCCTCCACGAGGGCGATTGGGACTCTCACGGCTCCATCAAGA-CATGGAAGTA 179 ||||||| ||||||||| || |||||||||||||||||| ||||||||| | |||||||| Sbjct 121 GGTGTCACCCTCCACGACGGTGATTGGGACTCTCACGGCGCCATCAAGAGC-TGGAAGTA 179 Query 180 CAATCTTGATGGGAAGGAGGAAGAGTTTAAGGAGAGAACAGAGATAGACGAAGAGAAGAT 239 || |||||||||||||||| ||| |||||||||||||| |||||| ||||| |||||||| Sbjct 180 CACTCTTGATGGGAAGGAGCAAGTGTTTAAGGAGAGAATAGAGATGGACGATGAGAAGAT 239 Query 240 GGCGGTGACGATGACTGCGCTCGATGGTCAAGTCATGGAGGAGCTTAAGGTGTATATCCC 299 | ||||| || | | |||| ||||||||||||||||||||||||||||||||||||| | Sbjct 240 GACGGTGGCGTTCAATGCGATCGATGGTCAAGTCATGGAGGAGCTTAAGGTGTATATAGC 299 Query 300 AAATCT-ACAATTCATCCCCGAGT-CCCAAAATG-CTTGTGTCTGCAAAGTTAGTGTGAA 356 ||| || |||||||||||||| || ||||||||| || |||| |||||||||||||||| Sbjct 300 AAA-CTTACAATTCATCCCCG-GTTCCCAAAATGGCT-GTGTTTGCAAAGTTAGTGTGAT 356 Query 357 GTGGGAGAAACGCACCGAAGACTC---AGAACCCGCCAAGTTTTAT-AAGTTTCTCGAGA 412 ||||||||||||||| ||||||| ||| ||| ||| ||| || ||||||||||||| Sbjct 357 TTGGGAGAAACGCACCCAAGACTCCCCAGAGCCCACCATGTTC-ATGAAGTTTCTCGAGA 415 Query 413 AGATGATTGCTGAT-TCGGATGACCACATTCTCCATAACCAGGAATGA 459 ||||| ||||||| | ||||||||| || ||||| ||| |||||||| Sbjct 416 AGATGGTTGCTGACAT-GGATGACCATATCCTCCAAAACGAGGAATGA 462 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16597681215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5