BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30990.1
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912947 jgi|Araly1|912947|Al_scaffold_0001_3201 518 2e-146
> Ahg912947 jgi|Araly1|912947|Al_scaffold_0001_3201
Length=462
Score = 518 bits (280), Expect = 2e-146
Identities = 408/468 (87%), Gaps = 15/468 (3%)
Strand=Plus/Plus
Query 1 ATGGCGATGTCGGGAACATACATGACGGACGTGCCTCTGAATGGATCGGCCGAGAAACAC 60
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 1 ATGGCGATGTCGGGAACATACATGACGGACGTTCCTCTGAAGGGATCGGCGGAGAAACAC 60
Query 61 TACAAGTTGTGGAGTAGCGAGACCCATCGCATCCCTGACACTATCGGCCACCTCATCCAA 120
||||| |||||||||||||| ||||| | ||||||| | |||||||||||||||||
Sbjct 61 TACAAAAGGTGGAGTAGCGAGAACCATCTCGTCCCTGATGCCATCGGCCACCTCATCCAT 120
Query 121 GGTGTCATCCTCCACGAGGGCGATTGGGACTCTCACGGCTCCATCAAGA-CATGGAAGTA 179
||||||| ||||||||| || |||||||||||||||||| ||||||||| | ||||||||
Sbjct 121 GGTGTCACCCTCCACGACGGTGATTGGGACTCTCACGGCGCCATCAAGAGC-TGGAAGTA 179
Query 180 CAATCTTGATGGGAAGGAGGAAGAGTTTAAGGAGAGAACAGAGATAGACGAAGAGAAGAT 239
|| |||||||||||||||| ||| |||||||||||||| |||||| ||||| ||||||||
Sbjct 180 CACTCTTGATGGGAAGGAGCAAGTGTTTAAGGAGAGAATAGAGATGGACGATGAGAAGAT 239
Query 240 GGCGGTGACGATGACTGCGCTCGATGGTCAAGTCATGGAGGAGCTTAAGGTGTATATCCC 299
| ||||| || | | |||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 240 GACGGTGGCGTTCAATGCGATCGATGGTCAAGTCATGGAGGAGCTTAAGGTGTATATAGC 299
Query 300 AAATCT-ACAATTCATCCCCGAGT-CCCAAAATG-CTTGTGTCTGCAAAGTTAGTGTGAA 356
||| || |||||||||||||| || ||||||||| || |||| ||||||||||||||||
Sbjct 300 AAA-CTTACAATTCATCCCCG-GTTCCCAAAATGGCT-GTGTTTGCAAAGTTAGTGTGAT 356
Query 357 GTGGGAGAAACGCACCGAAGACTC---AGAACCCGCCAAGTTTTAT-AAGTTTCTCGAGA 412
||||||||||||||| ||||||| ||| ||| ||| ||| || |||||||||||||
Sbjct 357 TTGGGAGAAACGCACCCAAGACTCCCCAGAGCCCACCATGTTC-ATGAAGTTTCTCGAGA 415
Query 413 AGATGATTGCTGAT-TCGGATGACCACATTCTCCATAACCAGGAATGA 459
||||| ||||||| | ||||||||| || ||||| ||| ||||||||
Sbjct 416 AGATGGTTGCTGACAT-GGATGACCATATCCTCCAAAACGAGGAATGA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16597681215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5