BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31010.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473344 jgi|Araly1|473344|fgenesh2_kg.1__3298__AT1G31010.1 1664 0.0
> Ahg473344 jgi|Araly1|473344|fgenesh2_kg.1__3298__AT1G31010.1
Length=1162
Score = 1664 bits (901), Expect = 0.0
Identities = 1088/1175 (93%), Gaps = 25/1175 (2%)
Strand=Plus/Plus
Query 13 AAACCCTA-AAAGGCTAAAAGTTTGAATCTTC-ACGAAATGCAGTTTCTTGGAAGATCAA 70
|||||| | ||| |||||| |||||||||| | ||||||||||||||| |||||||
Sbjct 4 AAACCCCATAAACCCTAAAAACTTGAATCTTCTCCAAAATGCAGTTTCTTGCAAGATCAC 63
Query 71 TTTCGAAATCGATAAGACCTTCGTTAAATTCAACTGCTAGAA-AATCATGGGTTCTTTCT 129
| |||||||| ||||||||||||||||||||| || ||| || |||||||||||| | |
Sbjct 64 TATCGAAATCCATAAGACCTTCGTTAAATTCAGCTTCTA-AACAATCATGGGTTC--T-T 119
Query 130 TCTCAGCAATTTCTTTCAACTTCTTCTACGGAAAGTAGTAGCCGTACTCGCGGAGGAGGA 189
||||| |||| ||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 120 TCTCACCAATATCTTTCAACTTTTTCTGCTGAAAGTAGTAGCCGTACTCGCGGAGGAGGA 179
Query 190 GGAGGAAACAGAGCTGAGAAATCGTCGGAGGAGTGGCCGAGACCGATGGAGGTACCGTAC 249
| | |||||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 180 --A-G---CAGAGCTGAGAAATCGACGGAAGAGTGGCCGAGACCGACGGAGGTACCGTAC 233
Query 250 CAACCCAAAATCGCGAACTCTATAGATTTAATTGGTTACGTTCACCAACCAGTTCAGTTC 309
||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||
Sbjct 234 CAACCCAAAATCGCGAATTCTATTGATTTGATTGGGTACGTTCACCAGCCAGTGCAGTTC 293
Query 310 GACTCTACACTCGATGGAAAATTCTGGGCAGGCACAGTCATTTCTCATGAACCTTCTTCT 369
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 294 GACTCTACACTCGATGGAAAATTCTGGGCAGGCACAGTTATTTCTCATGAACCTTCTTCT 353
Query 370 GATTCCA-AGTCTGAGTCTGATTCATCTAGTAACTTCTGGATTCCGGTACTGTTTGAAGG 428
||||||| | |||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 354 GATTCCATA-TCTGAGTCTGATTCGTCTAGTAATTTCTGGATTCCGGTATTGTTTGAAGG 412
Query 429 GGATTTAGCTCATACGGCTAACTCTTATTTGAAGAAAAACGATCGGGTTCATATTACTGG 488
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 413 TGATTTAGCTCATACGGCTAACAGTTATTTGAAGAAAAACGATCGGGTTCATATTACCGG 472
Query 489 ACAGATTTTAGGAGATGTGATTCAATCTGGAGCAAATTCTGACCAAGCACATGTTCAGTT 548
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 473 ACAGATTTTAGGAGATGTGATTCAATCTGGAGCAAATTCTGACCAAGCATGTGTTCAGTT 532
Query 549 GTTTAAAAGCTTTCATGGTAGCTTTTCACATCAAGTAATGGTTCGTGATCTCCACTACAT 608
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 533 GTTTAAAAGCTTTCATGGTAGCTTTTCACATCAAGTTATGGTTCGTGATCTCCACTACAT 592
Query 609 TGAAGGTTCTAAAGCCATGCCAAAGGTTTTGCCAACGTTGGATCAAAATGAAGGTGTGCT 668
|||||||||||||||| | ||||| ||| |||||||| || |||||||||||||||||||
Sbjct 593 TGAAGGTTCTAAAGCCCTACCAAAAGTTATGCCAACGGTGAATCAAAATGAAGGTGTGCT 652
Query 669 AAAGCATTCTGCTAGCGTTCAAAGAGGAAGAGAAT-TTGGAACTAATCTTTGGTTTGATC 727
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 653 TAAGCATTCTGCTAGCGTTCAAAGAGGAAGAG-ATGTTGGAACTAATCTTTGGTTTGATC 711
Query 728 TTGTTGATAAACCGAATGAATGGTGTGATTACCGTGAAATG-AAACAGAATGGATCGGTT 786
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 712 TTGTTGATAAACCGGATGAATGGTGTGATTACCGTGAAA-GCAAACAGAACGGATCGGTT 770
Query 787 AATCCTAAACACCCTGATTTCAAGAAGAAAGACGGGAGTCAAGCGCTTTGGCTTAACAAT 846
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 771 AATCCTAAACACCCTGATTTCAAGAAGAAAGACGGTAGTCAAGCTCTTTGGCTTAACAAA 830
Query 847 GCTCCTACAGAGATATTGTCCGAGCTCAAAGACGTGAAGTTTGATATTCCAAAATACGCA 906
||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 831 GCTCCCACAGAGATATTGTCTGAGCTCGAAGACGTGAAGTTTGATATTCCAAAATACGCA 890
Query 907 -AAACAACCAAAGGCCGGAGAGGAATCATGGAAGGACTTGGTAGATAACATGAATAAGTG 965
|| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 891 CCAA-AACCAAAGGCCGGAGAGGAATCATGGAAGGACTTGGTGGAAAACATGAATAAGTG 949
Query 966 GTGGGACAATAGAGTGGACAAGAGAAC-CCCAAAATCGCCGGATTTTAAGCACAAAGAAA 1024
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 950 GTGGGACAATAGATTGGACAAGAG-ACACCCAAAATCGCCGGATTTTAAGCACAAAGAAA 1008
Query 1025 CCGGTGTAGGTCTCTGGCTAAGTGACTCTCCGAGCTGGGTGTTAGAAAAACTGCCTCCCC 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CCGGTGTAGGTCTCTGGCTAAGTGACTCTCCGAGCTGGGTGTTAGAAAAACTGCCTCCCC 1068
Query 1085 CAAAGAGCAAAACAAGTGACATCTACGGTGTACAAGAGATGTTCTAACCAATGTTCATGT 1144
|||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 1069 CAAAGAGCAAAACAAGTGACATCTACGGTGCACAAGAGATGTTCTGACCAATCTTCATGT 1128
Query 1145 TGCGTTACTCTTAAtttttttCTTA-CTTCTACGG 1178
|||||||||||||||| |||| || |||||||||
Sbjct 1129 TGCGTTACTCTTAATTATTTT-TTGGCTTCTACGG 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5