BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31020.1
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473345 jgi|Araly1|473345|fgenesh2_kg.1__3299__AT1G31020.1 1027 0.0
> Ahg473345 jgi|Araly1|473345|fgenesh2_kg.1__3299__AT1G31020.1
Length=630
Score = 1027 bits (556), Expect = 0.0
Identities = 608/633 (96%), Gaps = 4/633 (1%)
Strand=Plus/Plus
Query 127 GAAGCTTGGTGTGTTTATACTATGAAGAGTCAATGGTCTAATTTTCATCAGATTGGGAGA 186
||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GAAGCTTAGTGTGTTCATACGATGAAGAGTCAATGGTCTAATTTCCATCAGATTGGGAGA 60
Query 187 AACTCTTTCTTAGCTGCTTCTACTGTTTACGTTTCAAACGAATTCAACTTCTTAAACACT 246
|||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||
Sbjct 61 AACTCTTTCTTAGCTGCTTCTACTGTCTACGTTTCAAGCGAATTCAACTTCGTAAACACA 120
Query 247 TCTCTTCTTAATCGAAGAAGCTTCTGTTTTGCAGAAGGAGATCGATCCAGCTTTGTAGTG 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTTCTTAATCGAAGAAGCTTCTGTTTTGCAGAAGGAGATCGATCCAGCTTTGTAGTG 180
Query 307 TTGAAATCGGAAGCAGAGTTCAACAGTGCATTGAGTAAAGCTCGAGATGGATCTTTGCCA 366
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGAAATCGGAGGCGGAGTTCAACAGTGCATTGAGTAAAGCTCGAGATGGATCTTTGCCA 240
Query 367 TCGGTTTTCTATTTCACTGCCGCATGGTGTGGACCTTGCAGGCTTATCTCTCCTGTGATA 426
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 241 TCGGTTTTCTATTTCACTGCCGCCTGGTGTGGACCTTGCAGGCTTATCTCTCCTGTAATA 300
Query 427 TTGGAGCTCAGTAATAAATATCCTGATGTAACAACGTATAAGGTCGACATTGACGAGGGC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGAGCTCAGTAATAAATATCCTGATGTAACAACGTATAAGGTCGACATTGACGAGGGC 360
Query 487 GGTCTATCAAATGCTATTGGGAAGTTAAATGTATCTGCTGTGCCAACACTGCAATTCTTC 546
||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 361 GGTCTTTCAAATGCTATTGGGAAGTTAAATGTCTCTGCTGTGCCAACATTGCAATTCTTC 420
Query 547 AAAGGTGGCGTGAAGAAAGCAGAGATTGTAGGCGTTGATGTGGTGAGGCTGAAGAGTGTC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAGGTGGCGTGAAGAAAGCAGAGATTGTAGGCGTTGATGTGGTGAGGCTGAAGAGTGTC 480
Query 607 ATGGAACAACTCTACAAGTGAGAGAGACTCT-TGACTTCTGTACACTACATTGCTTTGAG 665
||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 481 ATGGAACAACTATACAAGTGAGAGAAACTCTCTGACTTCTGTACACTACATTGCTTTGAG 540
Query 666 TTGTGATTATCTTGTGCTTTTGCTTTTAAGTTAGATTCTTTGATTCTCGTGTTCCTGCAA 725
|||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 541 TTGTGATTATTTTGTGCGTTTGCTTT-AAGTTAGATTCTTTCATTCTCGTGTTCCTGCAA 599
Query 726 ATTCATAAGGGTGCTAAGTTTGGTTTCTATTAA 758
|||||||||||| |||||||||||||| ||||
Sbjct 600 -TTCATAAGGGTG-TAAGTTTGGTTTCTGTTAA 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29202154422
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5