BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31040.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313743 jgi|Araly1|313743|fgenesh1_pm.C_scaffold_1002523 1158 0.0
> Ahg313743 jgi|Araly1|313743|fgenesh1_pm.C_scaffold_1002523
Length=735
Score = 1158 bits (627), Expect = 0.0
Identities = 688/718 (96%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 125 GAAGAAGAAGAAGAGATGATGATGATGATGGCAACGAAACCTGCATGGCTTGAAGGTTTA 184
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 19 GAAGAAGAAGAAGAGATGATGATGATGATAGCAACAAAACCTGCATGGCTTGAAGGATTA 78
Query 185 ATGGCGGAGACTTTCTTCTCAAGCTGTGGAATCCACGAAACTCGCCGTAAAAGTGAAAAG 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 79 ATGGCGGAAACTTTCTTCTCAAGCTGTGGAATCCACGAAACTCGCCGTAAAAGCGAAAAG 138
Query 245 AACGTTTTTTGCTTACTCTGTTGTCTCAGTGTTTGTCCTCACTGTCTCCCTTCTCATCGC 304
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 139 AACGTTTTTTGCTTACTCTGTTGTCTCAGTGTTTGTCCTCACTGTCTCCCTGCACATCGC 198
Query 305 TCTCATCCTCTTCTTCAGGTGAGACGATACGTATACCACGACGTCGTTCGGTTGAGTGAT 364
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 199 TCTCATCCTCTTCTTCAGGTGAGACGATATGTATACCACGACGTCGTTCGGCTGAGTGAT 258
Query 365 CTTGAGAAGCTCATAGATTGTTCATATGTTCAGCCATATACAATTAATGGAGCCAAAGTG 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 259 CTTGAGAAGCTCATAGATTGTTCATATGTTCAGCCATATACAATTAACGGAGCCAAAGTG 318
Query 425 ATATTCTTAAACCAAAGACAACAATCACGAGCTAAGGTTTCTTCAAATGTTTGCTTCACT 484
|||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 319 ATATTCATAAATCAAAGACCACAATCAAGAGCTAAGGTTTCTTCAAATGTTTGCTTCACT 378
Query 485 TGTGATAGAATCCTTCAAGAACCATTCCACTTTTGTTCCCTCTCTTGCAAGGTGGATTAT 544
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TGTGATAGAATCCTCCAAGAACCATTCCACTTTTGTTCCCTCTCTTGCAAGGTGGATTAT 438
Query 545 TTATCATATCAAGGAGATGATTTATCAAGCATTCTCTATAGAATTGATGAATCAGATTTT 604
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 439 TTATCATATCAAGGAGATGATTTATCAAGCGTTCTCTATAGAATTGATGAATCGGACTTC 498
Query 605 ACGTTCGAGGGTTTGAGAATGGACGGACATGATCAGCTCGGAGAGATATCGACGATGGAG 664
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 499 ACGTTCGAGGGTTTGAGAATGGACGGACATGATCAGCTCGGAGAAATATCGACGATGGAG 558
Query 665 GATGGGGAGGATATACTGGTAATTTCAGATGAATCTGAGCAAGGTAACAATAGTCATaag 724
|||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 559 GATGCAGAGGATATAATGGTAATTTCAGATGAATCAGAGCAAGGTAACAATAGTCATAA- 617
Query 725 aa-agagaagaagaagagcaagaagaagaagccagagagCAATTACTTGCCTGGGATGGT 783
|| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 618 AAGAGAGAAGAAGAAGAACAAGAAGAAGAAGCAAGAGAACAATTACTTGCCTGGGATGGT 677
Query 784 TCTTTCATCACTTGGTAATAGAAGAAAAGGTGCTCCTCATAGGGCTCCTTTTTCATAA 841
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 678 TCTTTCATCACTTGGTAATAGAAGGAAAGGTGCTCCTCATAGGGCTCCTTTTTCATAA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5