BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31050.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912951 jgi|Araly1|912951|Al_scaffold_0001_3205 1365 0.0
Ahg912952 jgi|Araly1|912952|Al_scaffold_0001_3206 472 5e-132
> Ahg912951 jgi|Araly1|912951|Al_scaffold_0001_3205
Length=900
Score = 1365 bits (739), Expect = 0.0
Identities = 829/873 (95%), Gaps = 3/873 (0%)
Strand=Plus/Plus
Query 535 TAACGGTTGGATCTATGACCCAAATCAAGTTAGGTACGATCAAAGTAGTGACCAACGGCT 594
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 27 TAACGGTTGGGTCTATGACACAAATCAAGTTAGGTACGATCAAAGTAGTGACCAACGGCT 86
Query 595 GTCAAAGTTGACGGATCTTGTAGGCAAGCACTGGTCAATTGCACCACCGAATAATCCCGA 654
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 87 GTCAAAGTTAACGGATCTTGTAGGCAAGCACTGGTCAATTGCGCCACCGAATAATCCCGA 146
Query 655 CATGAACCATAACCTTCATCATCACTTCGATCATGATCATTCTC--A-AAACGACGACAT 711
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 147 CATGAACCATAACCTTCATCATCACTTCGATCATGATCATTCTCAAACAAACGACGACGT 206
Query 712 TTCTATGTACAGACAAGCCTTGGAGGTGAAAAATGAGGAAGATCTTTGTTACAATAATGG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TTCTATGTACAGACAAGCCTTGGAGGTGAAAAATGAGGAAGATCTTTGTTACAATAATGG 266
Query 772 CTCAAGTGGTGGTGGTTCCTTGTTCCATGATCCTATAGAAAGTTCTAGAAGTTTCCTTGA 831
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 267 CTCAAGTGGCGGTGGTTCCTTGTTCCATGATCCTACAGAAAGTTCTAGAAATTTCCTTGA 326
Query 832 TATAAGGTTAAGTAGGCCATTAACGGATATTAATCCGTCATTTAAGCCATGCTTTAAGGC 891
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 327 TGTAAGGTTAAGTAGGCCATTAACGGATATTAATCCGTCGTTTAAGCCATGCTTTAAGGC 386
Query 892 CTTAAACGTATCCGAGTTTAACAAGAAAGAACATCAAACGGCATCTCTGGCAGCAGTGAG 951
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||
Sbjct 387 CTTAAACGTATCCGAGTTCAACAAGAAAGAACAGCAAACGGCATCACTGGCAGCAGGGAG 446
Query 952 ACTGGGAACAACAAACGCTGGAAAAAAGAAGAGATGTGAAGAAATTTCCGATGAGGTTTC 1011
| |||||||||||||||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct 447 ATTGGGAACAACAAACGCCGGGAAGAAGAAAAGATGTGAAGAAATTTCCGATGAGGTCTC 506
Query 1012 AAAGAAGGCCAAGTGCAGTGAGGGCTCTACACTTTCGCCAGAGAAGGAACTACCCAAAGC 1071
||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||
Sbjct 507 CAAGAAGGCCAAGTGCAGCGCCGGCTCTACACTTTCGCCGGAGAAGGAACTACCAAAAGC 566
Query 1072 CAAACTTCGAGACAAGATCACGACTCTACAGCAAATTGTGTCTCCCTTTGGAAAGACTGA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 567 CAAACTTCGAGACAAGATCACGACTCTACAGCAAATTGTGTCTCCCTTTGGAAAGACGGA 626
Query 1132 TACTGCTTCTGTGCTTCAAGAGGCCATCACTTACATAAATTTTTATCAAGAGCAAGTTAA 1191
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 627 TACTGCTTCTGTACTTCAAGAAGCCATCACTTACATAAATTTTTATCAAGAGCAAGTTAA 686
Query 1192 GCTGCTAAGCACTCCTTATATGAAGAATTCATCAATGAAGGATCCATgggggggATGGGA 1251
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 687 GCTGCTAAGCACTCCTTATATGAAGAATTCATCAATTAAGGATCCATGGGGAGGATGGGA 746
Query 1252 CAGAGAAGATCACAACAAAAGGGGACCGAAGCATCTTGATCTAAGGAGTAGAGGGCTTTG 1311
||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 747 TAGAGAAGATCACAACAAAATGGGACCGAAACATCTAGATCTAAGGAGTAGAGGGCTTTG 806
Query 1312 TTTGGTTCCTATTTCATATACCCCAATCGCATACCGCGATAACAGTGCAACTGACTACTG 1371
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 807 TTTGGTTCCTATTTCTTGCACCCCAATCGCATACCGCGATAACAGTGCAACTGACTATTG 866
Query 1372 GAATCCCACGTATAGAGGTTCTTTGTATCGTTA 1404
|| |||| |||||||||||||||||||||||||
Sbjct 867 GAGTCCCTCGTATAGAGGTTCTTTGTATCGTTA 899
> Ahg912952 jgi|Araly1|912952|Al_scaffold_0001_3206
Length=336
Score = 472 bits (255), Expect = 5e-132
Identities = 302/324 (93%), Gaps = 6/324 (2%)
Strand=Plus/Plus
Query 101 atgttaagggaagaaTGTACTCCAAGTTCATCATGGTGGGAAGATGTTCAACATCATCAT 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTAAGGGAAGAATGTACTCCAAGTTCATCATGGTGGGAAGATGTTCAACATCATCAT 60
Query 161 AATGATCATGCAAACTCGATTAGTTCGACGTCTTTCTACCATAAGAGTAGTAATAATAAC 220
|||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||
Sbjct 61 AATGATCATGCAAACTCGATTAATTCGACGTCTTTTTACCATAAGAATAGTAATAAAAAC 120
Query 221 TCACACGCCAACGCTAGCTGTGAAGAAGACAATCTCTCCG-TCTCTACCGT-ACGCGCTT 278
| | |||| ||||||||||||||||||||||||||||| | |||||||||| | ||||||
Sbjct 121 TTAAACGCAAACGCTAGCTGTGAAGAAGACAATCTCTC-GATCTCTACCGTGA-GCGCTT 178
Query 279 CGAATCGTTTGGACCTAACCGCTGAATCCTCCAATCATCACTCTCTCTCGGCTTCGAATC 338
| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 179 CAAATCGTTTGGACCTAACAGCTGAATCCTCCAATCATCACTCTCTCTCGGCTCCAAATC 238
Query 339 AGCCTGCCTCCTCCTCCGATGAGTTGCTTCGCGACCATGTAGTATCTTC-TCATAATCAT 397
||||||||||||| |||||||||||||| |||||||| || || ||||| | ||||||||
Sbjct 239 AGCCTGCCTCCTCTTCCGATGAGTTGCTCCGCGACCACGTGGTCTCTTCAT-ATAATCAT 297
Query 398 CTATGGAGTCTTGCCTTCTTGCCT 421
||||||||||||||||||||||||
Sbjct 298 CTATGGAGTCTTGCCTTCTTGCCT 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5