BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31070.2
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473349 jgi|Araly1|473349|fgenesh2_kg.1__3303__AT1G31070.2 2863 0.0
> Ahg473349 jgi|Araly1|473349|fgenesh2_kg.1__3303__AT1G31070.2
Length=1800
Score = 2863 bits (1550), Expect = 0.0
Identities = 1728/1812 (95%), Gaps = 20/1812 (1%)
Strand=Plus/Plus
Query 9 CCAAACGTCACAAATCCAAAACT-CAAAACCGAATCGTTTTTAGCCTCCAagagagagag 67
||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||
Sbjct 1 CCAAACGTCACAAATCCAAAA-TCCAAAATCGAATCGTTTTTAGCCTCC------GAGAG 53
Query 68 agagagagagatctgcatatagagaatgatagaaccgtcgatggagagagagaATGGTGC 127
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 54 AGAGAGAGAGATCTACAGATAGAGAATGAGAGAACCGTCGATGGAGAGAGAGAATGGAGC 113
Query 128 TTTAACGGCGGCGACAACAACGACGACGGCGGTGACTTCTCCTCCTCCGATGGCTTCTTC 187
|||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||
Sbjct 114 TTTAACGGCGGCGACAACTACAACGACGGCGGTAACTTCTCCACCTCCGATGGCTTCTTC 173
Query 188 ACCGCGTCAAGCTTTAGTTGAGAGATTGAAAGATTATGGACAAGAAGATATTTTCTCTCT 247
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 174 ACCGCGTCAAGCTTTAGTTGAGAGATTAAAAGATTATGGACAAGAAGACATTTTCTCTCT 233
Query 248 TTGGGATGAACTTTCACCAGACGAGAAAGATTTTCTCGTTAGAGATA-TTGAGAATTTGG 306
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 234 TTGGGATGAACTTTCACCAGACGAGAAAGATTTTCTCGTTAGAGA-AGTTGAGAATTTGG 292
Query 307 ATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAGGTTTACCGGTTG 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 293 ATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAGGTTTACCGGTGG 352
Query 367 CGGCGATTGAACCGGTACCGGAGAATTGGGTTTCGACAGTAGATGGTAGAACAATGGAAG 426
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 353 CGGCGATCGAACCGGTACCGGAGAATTGGGTTTCGACAGTAGATGGAAGAACAATGGAAG 412
Query 427 ATAGAGAGAAATGGTGGAAAATGGGATTAAAAACTATCTATGAAGGCAAATTAGGTGTTG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 ATAGAGAGAAATGGTGGAAAATGGGATTAAAAACTATCTATGAAGGCAAATTAGGTGTTG 472
Query 487 TGCTTTTATCTGGTGGACAGGGAACAAGGCTTGGAAGCTCAGATCCAAAAGGATGTTTCA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TGCTTTTATCTGGTGGACAGGGAACAAGGCTTGGAAGCTCAGATCCAAAAGGATGTTTCA 532
Query 547 ATATCGGATTACCATCAGGGAAATCGCTCTTTCAGATTCAGGCAGAGAGAATCTTGTGTG 606
|||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 533 ATATCGGACTGCCATCAGGGAAATCGCTCTTTCAGATTCAAGCAGAGAGAATCTTGTGTG 592
Query 607 TTCAAAGACTTGCTGCTCAAGTAGTGAGTGAAGGTCCAATTCGTCCAGTTACAATACATT 666
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 593 TTCAAAGACTTGCTGCTCAAGTAGTGAGTGAAGGTCCAATTCGTCCAGTTACAATACACT 652
Query 667 GGTATATTATGACTAGTCCATTTACTGATGAAGCGACACGAAAATATTTCTCGAGTCACA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GGTATATTATGACTAGTCCATTTACTGATGAAGCGACACGAAAATATTTCTCGAGTCACA 712
Query 727 AGTACTTTGGTCTTGAACCAGATCAAATCAGTTTTTTCCAACAAGGTACTTTGCCCTGCG 786
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 713 AGTACTTTGGTCTTGAACCAGATCAAATCAGTTTTTTCCAACAAGGTACATTGCCTTGCG 772
Query 787 TTACAAAGGATGGAAAGTTTATTATGGAGACACCTTTCAGTCTAGCTAAAGCTCCAGATG 846
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 773 TTACAAAGGATGGAAAGTTTATCATGGAGACACCTTTCAGTCTTGCTAAAGCTCCAGATG 832
Query 847 GTAACGGCGGAGTCTATGCAGCGCTAAAGTGTTCAAGGCTATTAGAGGATATGGCTTCTA 906
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 833 GTAACGGCGGGGTCTATGCGGCGCTAAAGTGTTCAAGGCTATTAGAGGACATGGCTTCTA 892
Query 907 GGGGGATTAAATACGTCGATTGCTATGGCGTTGACAATGTCCTGGTTCGAGTAGCTGATC 966
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GAGGAATTAAATACGTCGATTGCTATGGCGTTGACAATGTCCTGGTTCGAGTAGCTGATC 952
Query 967 CTACTTTTCTTGGATACTTCATCGATAAAGGGGCTGCTTCGGCTGCAAAAGTTGTGCGGA 1026
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 953 CTACTTTTCTTGGATACTTTATCGATAAAGGCGCTGCTTCGGCTGCAAAAGTTGTGCGGA 1012
Query 1027 AGGCATATCCTCAAGAACAGGTAGGAGTGTTTGTTAGAAGAGGTAAAGGAGGACCGTTGA 1086
|||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||
Sbjct 1013 AGGCATATCCTCAAGAACAGGTTGGAGTATTTGTTAGAAGAGGCAAAGGCGGACCGTTGA 1072
Query 1087 CAGTAGTTGAGTATAGTGAGCTTGATCAGTCTATGGCTTCTGCTATTAATCAACGAACAG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1073 CAGTAGTTGAGTATAGTGAGCTTGATCAGTCTATGGCTTCTGCTATTAATCAAAGAACAG 1132
Query 1147 GACGTCTTCAATATTGCTGGAGTAACGTGTGCTTACACATGTTTACTTTAGATTTCCTTA 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GACGTCTTCAATATTGCTGGAGTAACGTGTGCTTACACATGTTTACTTTAGATTTCCTTA 1192
Query 1207 ATCAAGTAGCGACCGGCCTAGAAAAAGATAGCGTGTACCATTTGGCGGAGAAGAAGATAC 1266
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1193 ATCAAGTCGCAACCGGCCTAGAAAAAGACAGCGTCTACCATTTGGCGGAGAAGAAGATAC 1252
Query 1267 CATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTC 1326
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1253 CATCTATGAATGGATACACAATGGGACTGAAACTAGAACAATTCATTTTTGATTCGTTTC 1312
Query 1327 CTTATGCTCCTTCAACCGCACTTTTTGAGGTTTTAAGGGAAGAGGAGTTTGCACCAGTGA 1386
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1313 CATATGCTCCTTCAACCGCACTCTTTGAGGTATTAAGGGAAGAGGAGTTTGCACCAGTGA 1372
Query 1387 AGAATGTTAACGGGTCTAATTTTGATACACCGGAGAGTGCGAGGCTTTTGGTTCTAAGGT 1446
|||| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1373 AGAACGTGAACGGGTCGAATTTCGATACACCGGAAAGTGCGAGGCTTTTGGTTCTAAGGC 1432
Query 1447 TACACACACGTTGGGTTATAGCAGCTGGTGGATTTCTAACACATTCTGTGCCTTTATATG 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TACACACACGTTGGGTTATAGCAGCTGGTGGATTTCTAACACATTCTGTGCCTTTATATG 1492
Query 1507 CTACTGGTGTAGAGGTTTCACCTTTGTGCTCATACGCCGGAGAAAATCTTGAAGCTATTT 1566
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 CAACTGGTGTAGAGGTTTCACCTTTGTGCTCATACGCCGGAGAAAATCTTGAAGCTATTT 1552
Query 1567 GTCGAGGAAGAACGTTTCATGCACCTTGTGAAATTTCCCTCTAATGgtttttgtgttttt 1626
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1553 GTCGAGGAAGAACGTTTCATGCACCTTGTGAAATATCCCTCTAATGGTTTTTTTGTTTCT 1612
Query 1627 gttttggggtattaaaatcttttcatcatttttatgtgctttgttttctttgttt-CC-G 1684
||||||||||||||| || ||||||||||||| ||||||||||| || ||| ||| || |
Sbjct 1613 GTTTTGGGGTATTAATATGTTTTCATCATTTTCATGTGCTTTGTCTT-TTT-TTTGCCCG 1670
Query 1685 GTTGTGGTTTATATATAAACTGATTATCTTCCCATgagagagagaaagagagag----TC 1740
| ||||||||||||||||||| ||| ||||||| ||| |||||||||||||||| ||
Sbjct 1671 GCTGTGGTTTATATATAAACTTATTTTCTTCCCGTGAAAGAGAGAAAGAGAGAGAGAGTC 1730
Query 1741 AAAGAGGTCTTGGCGTTTTATATCCATTAATGTAACATATCTAATAAAAATTTTATGTTG 1800
||||||||||||||||||| ||||||| | ||||||||||||||||||| |||| |||||
Sbjct 1731 AAAGAGGTCTTGGCGTTTTGTATCCAT-ATTGTAACATATCTAATAAAA-TTTTCTGTTG 1788
Query 1801 GTTTTTGAATCT 1812
||||||||||||
Sbjct 1789 GTTTTTGAATCT 1800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5