BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31090.1
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922217 jgi|Araly1|922217|scaffold_103498.1 523 8e-148
Ahg922214 jgi|Araly1|922214|scaffold_103495.1 523 8e-148
Ahg922213 jgi|Araly1|922213|scaffold_103494.1 331 5e-90
Ahg336233 jgi|Araly1|336233|fgenesh1_pg.C_scaffold_1002798 292 2e-78
Ahg937176 jgi|Araly1|937176|scaffold_501367.1 102 4e-21
Ahg922179 jgi|Araly1|922179|scaffold_103460.1 78.7 7e-14
> Ahg922217 jgi|Araly1|922217|scaffold_103498.1
Length=969
Score = 523 bits (283), Expect = 8e-148
Identities = 398/452 (88%), Gaps = 14/452 (3%)
Strand=Plus/Plus
Query 477 TAAACTAGGTGTGATTAATTTGGAGGATGATTATGATGGTGGATATCTCCTTAAGTTACG 536
|||| | ||||| ||||||||||| ||| |||||| | |||||| || ||||||||| ||
Sbjct 434 TAAATTTGGTGTTATTAATTTGGAAGATAATTATGCTCGTGGATTTCCCCTTAAGTTGCG 493
Query 537 TATGTTTGTTCTAGAGGATTTCGAGAAAC-AGAAATGGACTACATATGTCC-ACACTTTG 594
||| | |||||||| || ||||||||| || ||||||| ||||||| || ||||||||
Sbjct 494 TATATGGGTTCTAGACAATGTCGAGAAACAAG-AATGGACGACATATG-CCTACACTTTG 551
Query 595 AGGGATGAGAATAAAATCAAGGA-CAATGACAATGTTTATGTTGTTGGGGCAACTGCTTC 653
|||| |||||||| | ||||||| || | | || ||||||||||||||| ||||||||
Sbjct 552 AGGGCTGAGAATATAGTCAAGGATAAAAG-CTATATTTATGTTGTTGGGGTGACTGCTTC 610
Query 654 AGGTCAAATTGTTTTGGCGAGGAAT-AAGGCATATAAACCGTTTTATGTGTTTTACTTTA 712
|||| ||||||||||||| | ||| || |||||||||||||||||||| ||||||||||
Sbjct 611 AGGTGAAATTGTTTTGGC-AAAAATGAATGCATATAAACCGTTTTATGTTTTTTACTTTA 669
Query 713 ATCCCGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGAAGATT 772
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 670 ATCCCGAAAAGAACACTCTCCAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGATGAAT 729
Query 773 GG--TT----TCATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTGATG 826
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GGTTTTACGATCATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTGATG 789
Query 827 TTATGAAGACAACATATGCTGCAACATCGATAAGACCAGCAGAACAGAACACATCAACAT 886
||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct 790 TTATGAAGACAACGTATGCTGCAACATCGATAAGCCCACCAGAACATAACACATCAACAT 849
Query 887 CATCTAGAGAAGATCATCTAGTGAGGACCGTT 918
|||||||||||||||||| |||||||||||||
Sbjct 850 CATCTAGAGAAGATCATCAAGTGAGGACCGTT 881
> Ahg922214 jgi|Araly1|922214|scaffold_103495.1
Length=969
Score = 523 bits (283), Expect = 8e-148
Identities = 398/452 (88%), Gaps = 14/452 (3%)
Strand=Plus/Plus
Query 477 TAAACTAGGTGTGATTAATTTGGAGGATGATTATGATGGTGGATATCTCCTTAAGTTACG 536
|||| | ||||| ||||||||||| ||| |||||| | |||||| || ||||||||| ||
Sbjct 434 TAAATTTGGTGTTATTAATTTGGAAGATAATTATGCTCGTGGATTTCCCCTTAAGTTGCG 493
Query 537 TATGTTTGTTCTAGAGGATTTCGAGAAAC-AGAAATGGACTACATATGTCC-ACACTTTG 594
||| | |||||||| || ||||||||| || ||||||| ||||||| || ||||||||
Sbjct 494 TATATGGGTTCTAGACAATGTCGAGAAACAAG-AATGGACGACATATG-CCTACACTTTG 551
Query 595 AGGGATGAGAATAAAATCAAGGA-CAATGACAATGTTTATGTTGTTGGGGCAACTGCTTC 653
|||| |||||||| | ||||||| || | | || ||||||||||||||| ||||||||
Sbjct 552 AGGGCTGAGAATATAGTCAAGGATAAAAG-CTATATTTATGTTGTTGGGGTGACTGCTTC 610
Query 654 AGGTCAAATTGTTTTGGCGAGGAAT-AAGGCATATAAACCGTTTTATGTGTTTTACTTTA 712
|||| ||||||||||||| | ||| || |||||||||||||||||||| ||||||||||
Sbjct 611 AGGTGAAATTGTTTTGGC-AAAAATGAATGCATATAAACCGTTTTATGTTTTTTACTTTA 669
Query 713 ATCCCGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGAAGATT 772
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 670 ATCCCGAAAAGAACACTCTCCAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGATGAAT 729
Query 773 GG--TT----TCATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTGATG 826
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GGTTTTACGATCATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTGATG 789
Query 827 TTATGAAGACAACATATGCTGCAACATCGATAAGACCAGCAGAACAGAACACATCAACAT 886
||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct 790 TTATGAAGACAACGTATGCTGCAACATCGATAAGCCCACCAGAACATAACACATCAACAT 849
Query 887 CATCTAGAGAAGATCATCTAGTGAGGACCGTT 918
|||||||||||||||||| |||||||||||||
Sbjct 850 CATCTAGAGAAGATCATCAAGTGAGGACCGTT 881
> Ahg922213 jgi|Araly1|922213|scaffold_103494.1
Length=967
Score = 331 bits (179), Expect = 5e-90
Identities = 368/454 (81%), Gaps = 33/454 (7%)
Strand=Plus/Plus
Query 477 TAAACTAGGTGTGATTAATTTGGAGGATGATTATGATGGTGGATATCTCC-TTAAGTTAC 535
|||||||||||||||||||||||||||||||||| |||| |||| | ||| |||||||||
Sbjct 530 TAAACTAGGTGTGATTAATTTGGAGGATGATTATTATGGAGGATTT-TCCCTTAAGTTAC 588
Query 536 GTATGTTTGTTCTAGAGGATTTCGAGAAACA-GAAATGGACTACATATGTCC-ACACTTT 593
|||||| ||||||||| || |||||||||| ||| |||| |||||||| || |||| ||
Sbjct 589 GTATGTGGGTTCTAGAGAATGTCGAGAAACATGAA-TGGAGTACATATG-CCTACACATT 646
Query 594 GAGGGATGAGAATAAAATC---AAGGACAATGACAATGTTTATGTTGTTGGGGCAACTGC 650
||||| |||||||||| || |||| | | | ||| | | ||| |||| | ||||
Sbjct 647 GAGGGCTGAGAATAAAGTCGTTAAGGTTAGTCAAAATCTGTCCGTTATTGGAGTGACTGG 706
Query 651 TTCAGGTCAAATTGTTTTGGCGAGGAATAAGGCATATAAACCGTTTTATGTGTTT-TACT 709
||| ||| | ||||||||||||| |||| |||||||||| ||||||| ||| ||||
Sbjct 707 TTCGGGTGACATTGTTTTGGCGAACCATAATTTATATAAACCGATTTATGT-TTTCTACT 765
Query 710 TTAATCCCGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGAAG 769
|||||||||||| || |||||| | | |||||||||||||||||||||| ||||| ||||
Sbjct 766 TTAATCCCGAAAGGAACACTCTCCTATGTGTTGAAATCCAAGGTGTTAGGGAAGAGGAAG 825
Query 770 ATTGGTTT------CATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTG 823
| |||||| |||| |||||||| ||||||| ||||||| ||||||||||| ||||
Sbjct 826 AATGGTTTAAAAATCATAAAGTTTACTGCTTTGTAAACCATGTAGAGGATCTTAGATTTG 885
Query 824 ATGTTATGAAGACAACATATGCTGCAACATCGATAAGACCAGCAGAACAGAACACATCAA 883
|||||||||||||||||| || | | | | | ||| ||||||||| ||||||||
Sbjct 886 ATGTTATGAAGACAACAT---CT--A---T--A-A-GCCCACCAGAACAGAGCACATCAA 933
Query 884 CATCATCTA----GAGAAGATCATCTAGTGAGGA 913
||||||||| |||||| ||||| ||||||||
Sbjct 934 CATCATCTATCTAGAGAAGCTCATCAAGTGAGGA 967
> Ahg336233 jgi|Araly1|336233|fgenesh1_pg.C_scaffold_1002798
Length=840
Score = 292 bits (158), Expect = 2e-78
Identities = 233/267 (87%), Gaps = 14/267 (5%)
Strand=Plus/Plus
Query 659 AAATTGTTTTGGCG-AGGAATAAGGCATATAAACCGTTTTATGTGTT-TTACTTTAATCC 716
|||||||||||||| ||| | || | ||| || ||||||||||| || |||||||||||
Sbjct 497 AAATTGTTTTGGCGAAGGGA-AATGTATACAATCCGTTTTATGT-TTACTACTTTAATCC 554
Query 717 CGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGAAGATTGG-- 774
|||||| | |||||| | ||||||||||||||||||||||||||||| ||||| |||
Sbjct 555 CGAAAAAAACACTCTCCTAAGTGTTGAAATCCAAGGTGTTAGAGAAGGGGAAGACTGGTC 614
Query 775 T----TTCATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTT-AGGTTTGATGTTA 829
| ||||||||||||||||||||||||| ||||| |||| |||| | |||||||||||
Sbjct 615 TAACATTCATAGAGTTTACTACTTTGTAGATCATGTAGAGGGTCTTCA-GTTTGATGTTA 673
Query 830 TGAAGACAACATATGCTGCAACATCGATAAGACCAGC-AGAACAGAACACATCAACATCA 888
||||||||||||||||||||||||| ||||| ||| | |||||||| |||||||||||||
Sbjct 674 TGAAGACAACATATGCTGCAACATCTATAAGCCCA-CTAGAACAGAGCACATCAACATCA 732
Query 889 TCTAGAGAAGATCATCTAGTGAGGACC 915
|||||||||||||||| ||||||||||
Sbjct 733 TCTAGAGAAGATCATCAAGTGAGGACC 759
> Ahg937176 jgi|Araly1|937176|scaffold_501367.1
Length=1064
Score = 102 bits (55), Expect = 4e-21
Identities = 104/128 (81%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 634 GTTGTTGGGGCAACT-GCTTCAGGTCAAATTGTTTTGGCGAGGAATAAGGCATATAAACC 692
|||| ||| | |||| | ||||||| | || |||||| | | ||| | | | ||||||
Sbjct 721 GTTGCTGGAGTAACTAG-TTCAGGTGATATCGTTTTGTCCATGAAGCATGTGTGTAAACC 779
Query 693 GTTTTATGTGTTTTACTTTAATCCCGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGG 752
||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 780 TTTTTATGTGTTCTACTTCAATCCCGAAAGGAACACTCTACAAAGTGTTGAAATCCAAGG 839
Query 753 TGTTAGAG 760
| || |||
Sbjct 840 TTTTGGAG 847
> Ahg922179 jgi|Araly1|922179|scaffold_103460.1
Length=2001
Score = 78.7 bits (42), Expect = 7e-14
Identities = 90/113 (80%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 318 TAGCTATGCTTCTGGTTT-GCTATATTTCCCTAATAT-ACGTATCTCAAACCATAATGAC 375
|||||||||||||||||| || ||| || || |||| | | || ||| | ||||
Sbjct 119 TAGCTATGCTTCTGGTTTGGC-CTATCTCTCTGATATGA-GAATATCAGTGAAGGATGAG 176
Query 376 GATGTAGTGCGTGTGATATGTAACCCTAGCACAAGACAGTATGCGATCTTACC 428
|||||||||||||||||||||||||||| ||| || ||||| || |||||||
Sbjct 177 GATGTAGTGCGTGTGATATGTAACCCTATCACGGGAAAGTATACGGTCTTACC 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34729977387
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5