BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31120.1
Length=2867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482472 jgi|Araly1|482472|fgenesh2_kg.4__1532__AT2G35060.2 2348 0.0
Ahg336243 jgi|Araly1|336243|fgenesh1_pg.C_scaffold_1002808 1520 0.0
Ahg492879 jgi|Araly1|492879|fgenesh2_kg.7__2312__AT4G19960.1 403 3e-111
> Ahg482472 jgi|Araly1|482472|fgenesh2_kg.4__1532__AT2G35060.2
Length=2642
Score = 2348 bits (1271), Expect = 0.0
Identities = 2053/2426 (85%), Gaps = 72/2426 (3%)
Strand=Plus/Plus
Query 401 AAATGGCGGGGAGAGTAGAATCATCCATTGGT-GGTGGTGAGATTGATGAAGAAG-G--T 456
||||||| | ||||||||| || || | | |||||||||||||||||||||| | |
Sbjct 134 AAATGGCTGCAAGAGTAGAAGCA-GCAACGATGGGTGGTGAGATTGATGAAGAAGAGACT 192
Query 457 GATGAGAGAGGTAGTATGTGGGATTTGGATCAGTCA-CTTGATCAA-CCTATGGATGAAG 514
|||||||||||||| |||||||||||||| ||| | ||||||||| || ||||||||||
Sbjct 193 GATGAGAGAGGTAGCATGTGGGATTTGGACCAG-AAGCTTGATCAATCC-ATGGATGAAG 250
Query 515 AAGCTGGTCGCCTCAGGAACATGTATAGAGAAAAGAAATTCTCGGCGT-TTTTGCTTCTG 573
|||||||||| || || |||||||| |||||||||||||||||||| | || ||||||||
Sbjct 251 AAGCTGGTCGACTTAGAAACATGTACAGAGAAAAGAAATTCTCGGC-TCTTCTGCTTCTG 309
Query 574 CAGCTTTCATTTCAGAGTCTTGGTGTTGTTTATGGAGATTT-GGGAACTTCTCCTCTATA 632
|||||||| |||||||| ||||||||||| ||||||||||| ||| || |||||||| ||
Sbjct 310 CAGCTTTCGTTTCAGAGCCTTGGTGTTGTATATGGAGATTTAGGG-ACATCTCCTCTCTA 368
Query 633 TGTTTTCTATAATACATTTCCTCGA-GGGATCAAAGACCCTGAAGATATCATTGGAGCTT 691
||||||||| ||||||||||||| | ||||||||||| | ||||||||||||||||||
Sbjct 369 TGTTTTCTACAATACATTTCCTC-ATGGGATCAAAGATCAAGAAGATATCATTGGAGCTC 427
Query 692 TATCGCTAATCATATATTCCCTCACACTCATCCCTCTCCTCAAATATGTGTTCGTTGTAT 751
|||| || || |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 428 TATCTCTCATTATATATTCACTCACACTCATCCCTCTCCTCAAATATGTTTTCGTTGTAT 487
Query 752 GCAAAGCAAACGATAATGGGCAA-G--GTGGTACATTTGCTCTCTATTCTTTGCTCTGTA 808
| ||||||||||||||||| ||| | |||| || |||||||| ||||| || |||||||
Sbjct 488 GTAAAGCAAACGATAATGGTCAAGGTAGTGGGACTTTTGCTCTGTATTCATTACTCTGTA 547
Query 809 GACATGCAAAAGTTAGCACAATTCCGAACCAACACCGTACTGATGAAGAGCTTACTACTT 868
||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 548 GACATGCCAAAGTGAAAACAATTCAGAACCAACACCGTACTGATGAAGAGCTTACTACTT 607
Query 869 ATAGTCGTACTACATTTCATGAGCGTTCTTTTGCTGCAAAAACCAAGAGATGGTTAGAGA 928
| || || ||||| || ||||||| ||| |||||||| || ||||| ||||||||||| |
Sbjct 608 ACAGCCGCACTACGTTCCATGAGCATTCCTTTGCTGCTAAGACCAAAAGATGGTTAGAAA 667
Query 929 A-CGGTACCTCTAGGAAAAAT-GCGCTACTTATTCTCGTTCTTGTTGGTACGTGCATGGT 986
| ||| || ||||| ||||| ||||| |||||| | |||||||||||||| || |||||
Sbjct 668 AGCGG-ACATCTAG-AAAAACCGCGCTTCTTATTTTAGTTCTTGTTGGTACATGTATGGT 725
Query 987 GATAGGCGATGGAATCCTTACTCCCGCCATTTCGGTTCTATCTGCTGCGGGTGGGCTCAG 1046
|| |||||||| |||||||||||||||||||| ||||| || ||||| |||||||| ||
Sbjct 726 TATCGGCGATGGTATCCTTACTCCCGCCATTTCTGTTCTCTCAGCTGCTGGTGGGCTAAG 785
Query 1047 GGTAAACC-TACCTCATATAAACAACGGTATTGTTGTTGTTG-TGGCTGTTGTGATATTA 1104
||||||| | ||||| |||| ||| ||| |||||||| ||| | |||||||||||||||
Sbjct 786 AGTAAACCGT-CCTCACATAAGCAATGGTGTTGTTGTT-TTGGTCGCTGTTGTGATATTA 843
Query 1105 GTGAGCTTGTTTAGTGTACAACATTATGGAACAGACAGAGTCGGGTGGCTTTTCGCGCCC 1164
|| ||||||||||||||||| ||||||||||||||| | || || |||||||| ||||||
Sbjct 844 GTCAGCTTGTTTAGTGTACAGCATTATGGAACAGACCGGGTTGGTTGGCTTTTTGCGCCC 903
Query 1165 ATTGTATTTCTCTGGTTTCTCTTTATTGCAAGTATCGGTATGTTCAATATATGGAAACAT 1224
||||| |||||||||||||||| ||| |||||||||||||| | |||||| ||||||||
Sbjct 904 ATTGTTTTTCTCTGGTTTCTCTCTATCGCAAGTATCGGTATCTACAATATCTGGAAACAC 963
Query 1225 GACCCAAGCGTTTTGAAAGCGTTT-TCCCCGGTTTATATATTTCGATATTTTAAAAGAGG 1283
||| | || || |||||||| ||| ||||| |||||||||| ||| ||||||||||||||
Sbjct 964 GACACTAGTGTCTTGAAAGC-TTTCTCCCCAGTTTATATATATCGGTATTTTAAAAGAGG 1022
Query 1284 AGGCCAAGATCGTTGGACCTCGCTTGGAGGCATTATGCTTAGTATCACAGGGATTGAAGC 1343
||| | |||||||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 1023 AGGTCGGGATCGTTGGACCTCTCTTGGAGGTATTATGCTTAGTATAACAGGAATTGAAGC 1082
Query 1344 TCTCTTTGCGGATCTCTCTCATTTTCCAGTCTCAGCTGTGCAATTCGCTTTTACTGTAAT 1403
||||| || ||||| || |||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1083 ACTCTTCGCTGATCTATCGCATTTTCCGGTCTCAGCTGTGCAAATCGCGTTTACTGTAAT 1142
Query 1404 TGTGTTTCCTTGCCTCCTTTTGGCTTATAGTGGACAAGCTGCATACCTTAGAA-AGTACC 1462
|||||||||||||| |||||||||||||| ||||||||||| ||| |||| | | || |
Sbjct 1143 CGTGTTTCCTTGCCTTCTTTTGGCTTATAGCGGACAAGCTGCTTACATTAGGATA-TATC 1201
Query 1463 CGCATCATGTCGAAGACGCGTTTTATCAATCCATTCCAAAAAGAGTATATTGGCCAATGT 1522
|| ||||||| | || |||||||| | ||||||||| ||| ||||||||||||||||
Sbjct 1202 CGGATCATGTGGCTGATGCGTTTTACCGTTCCATTCCAGGAAGTGTATATTGGCCAATGT 1261
Query 1523 TCATAATTGCAACTGCTGCTGCAATAGTTGCAAGCCAAGCTACAATATCCGCAACATTCT 1582
|||| |||||||| ||||| || || || || ||||||||||| || || || |||||||
Sbjct 1262 TCATTATTGCAACCGCTGCAGCGATTGTGGCGAGCCAAGCTACGATCTCGGCGACATTCT 1321
Query 1583 CGTT-GATCAAGCAAGCTCTTGCTCATGGATG-TTTCCCGAGAGTTAAAGTCGTGCATAC 1640
| || | ||||||||||||| || || || || ||||| ||||||||||| ||||||||
Sbjct 1322 CCTTAG-TCAAGCAAGCTCTAGCCCACGGTTGCTTTCCA-AGAGTTAAAGTGGTGCATAC 1379
Query 1641 TTCCCGGAAATTCCTTGGTCAGATTTACGTTCCAGACATCAATTGGATCCTCATGATCCT 1700
||||||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 1380 TTCCCGGAAATTCCTCGGTCAGATTTACGTTCCTGACATAAATTGGATTCTAATGATCCT 1439
Query 1701 TTGCATAGCTGTCACTGCTGGATTCAAGAACCAGAACCAGATAGGAAATGCTTATGGGAC 1760
|||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1440 TTGCATTGCTGTCACCGCTGGATTCAAGAACCAGAGTCAGATAGGAAACGCTTATGGGAC 1499
Query 1761 TGCAGTTGTGATTGTCATGCTCGTGACAACGCTTCTCATGATGCTGATCATGATACTTGT 1820
||||||||||| |||||||| |||||||| || || ||||||||||||||||| || ||
Sbjct 1500 CGCAGTTGTGATCGTCATGCTTGTGACAACACTGCTTATGATGCTGATCATGATCCTAGT 1559
Query 1821 TTGGCGATGCCATTGGGTTCTAGTCCTCTTATTTACTCTTC-TATCCCTTGTTGTGGAAT 1879
||||| |||||||||||||| || ||| |||| || | || | || ||||| |||||||
Sbjct 1560 GTGGCGTTGCCATTGGGTTCTTGTTCTCATATTCAC-CATCCTCTCACTTGTCGTGGAAT 1618
Query 1880 GCACTTACTTCTCGGCGGTGCTCTTCAAGGTTAACCAAGGTGGATGGGTTCCGCTGGTCA 1939
|||| || |||||||| |||| ||||| | |||||||||| ||||| ||||| || |
Sbjct 1619 GCACCTATTTCTCGGCCATGCTTTTCAAAATCGACCAAGGTGGTTGGGTACCGCTAGTAA 1678
Query 1940 TTGCGGCTGCGTTTCTTGTCATCATGTATGTTTGGCATTATGGAACCCTCAAGAGGTATG 1999
| || || || ||||| ||||||||| || ||||| || ||||| | ||||| || |
Sbjct 1679 TCGCTGCAGCTTTTCTCCTCATCATGTCGGTATGGCACTACGGAACTTTAAAGAGATACG 1738
Query 2000 AGTTTGAAATGCATAGTAAAGTCTCCATGGCTTGGATTCTCGGACTCGGTCCTAGCCTTG 2059
||||||| ||||| |||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1739 AGTTTGAGATGCACAGTAGAGTCTCAATGGCTTGGATCCTCGGACTCGGTCCTAGCCTTG 1798
Query 2060 GTCTTGTCCGTGTTCCTGGGATTGGCCTTGTTTACACCGAGCTAGCTAGTGGAGTCCCTC 2119
| ||||| || ||||| ||| ||||||| ||||||||||| ||||| |||||||||||||
Sbjct 1799 GGCTTGTTCGGGTTCCCGGGGTTGGCCTCGTTTACACCGAACTAGCCAGTGGAGTCCCTC 1858
Query 2120 ACATTTTCTCTCATTTCATCACAAACCTGCCGGCAACTCACTCTGTCGTGATCTTTGTCT 2179
||||||| |||||||||||||||||||| || || | |||||| || ||| | || || |
Sbjct 1859 ACATTTTTTCTCATTTCATCACAAACCTACCAGCCATTCACTCAGTTGTGGTGTTCGTAT 1918
Query 2180 GCGTCAAGAACCTTCCCG-TATACACCGTTCCCCAGGAAGAACGGTTCCTTGTAAAAAGA 2238
||||||||||||| |||| | |||||||| ||| ||||||| |||||||| || |||||
Sbjct 1919 GCGTCAAGAACCT-CCCGGTTTACACCGTACCCGAGGAAGAGCGGTTCCTCGTTAAAAGG 1977
Query 2239 ATCGGACCCAAAAACTTTCACATGTTCCGCTGCGTTGCGAGGTACGGATACAGAGACTTG 2298
|| || || |||||||| ||||||||||| || || || |||||||||||||||||||||
Sbjct 1978 ATTGGTCCAAAAAACTTCCACATGTTCCGTTGTGTCGCAAGGTACGGATACAGAGACTTG 2037
Query 2299 CACAAGAAAGATGACGACTTTGAGAAACGGCTCTTTGAAAGCCTCTTCCTT-T-TCCTCC 2356
|||||||||||||| |||||||||||||| |||||||| ||||||||| || | | |||
Sbjct 2038 CACAAGAAAGATGATGACTTTGAGAAACGTCTCTTTGAGAGCCTCTTC-TTGTATG-TCC 2095
Query 2357 GCCTCGAATCGATGATGGAAGG---CTGCTCAGATTCCGAAGATTACAGCGTCTGCGGAA 2413
|||| |||| |||||||||||| ||| || |||||||| || |||||| |||||||||
Sbjct 2096 GCCTTGAATTGATGATGGAAGGAGGCTGTTCGGATTCCGATGACTACAGCATCTGCGGAA 2155
Query 2414 GCCAACAAC-G---ACAGTCCAGAGATGGGGTCAACGGGAATGGGAACGAGATTAGGAAC 2469
|||| |||| | | || | | | |||| |||||||||| |||||||| | |
Sbjct 2156 GCCAGCAACAGCTTAAAGAC-ACACTTGGG---AACGGGAATGAGAACGAGAAT-----C 2206
Query 2470 GTGTCGACGTTTGATACATTTGATTCTATAGAGTCGGTTATAGCTCCCACTACAACAAAA 2529
|| | ||||||||||||||||| || |||||||| | | | | |||| | || |
Sbjct 2207 -TGGCAACGTTTGATACATTTGACTCGATAGAGTCAAT-A-A-C-CCCAGTG-AA-A--- 2256
Query 2530 CGGACAAGTCA-CACAGTGACGGGGTCGAGCCAAATGAGCGGAGGAGGGGACGAAG-TGG 2587
||| || || ||| ||||| | ||||||||| |||||||| ||| ||||| | |||
Sbjct 2257 CGGGTGAG-CAACACGGTGACAGCGTCGAGCCAGATGAGCGGTGGACTAGACGA-GCTGG 2314
Query 2588 AGTTCATAAACGGGTGCAGAGACGCAGGAGTGGTGCATATAATGGGGAACACAGTGGTTC 2647
||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 2315 AGTTCATAAACGGGTGCAGGGACGCAGGAGTGGTACACATAATGGGGAACACGGTGGTTC 2374
Query 2648 GAGCCAGGAGAGAGGCAAGGTTCTACAAGAGGATAGCCATTGATTATGTTTATGCGTTTC 2707
|||||||||| || || ||||||||||||| |||||| ||||| ||||| ||||| ||||
Sbjct 2375 GAGCCAGGAGGGAAGCGAGGTTCTACAAGAAGATAGCGATTGACTATGTGTATGCATTTC 2434
Query 2708 TTAGGAAGATTTGTAGAGAAAACAGTGCCATCTTCAATGTTCCTCAGGAGAGCCTTTTAA 2767
||||||||||||| |||||| | ||||| |||| |||||||||||||||||||||||| |
Sbjct 2435 TTAGGAAGATTTGCAGAGAACATAGTGCTATCTACAATGTTCCTCAGGAGAGCCTTTTGA 2494
Query 2768 ATGTTGGCCAGATTTTCTATGTGTAA 2793
||||||| |||||||||||||| |||
Sbjct 2495 ATGTTGGTCAGATTTTCTATGTATAA 2520
> Ahg336243 jgi|Araly1|336243|fgenesh1_pg.C_scaffold_1002808
Length=1905
Score = 1520 bits (823), Expect = 0.0
Identities = 891/925 (96%), Gaps = 0/925 (0%)
Strand=Plus/Plus
Query 577 CTTTCATTTCAGAGTCTTGGTGTTGTTTATGGAGATTTGGGAACTTCTCCTCTATATGTT 636
||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 31 CTTTCGTTTCAGAGTCTTGGTGTTGTTTATGGAGATTTGGGAACTTCGCCTTTATATGTT 90
Query 637 TTCTATAATACATTTCCTCGAGGGATCAAAGACCCTGAAGATATCATTGGAGCTTTATCG 696
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 91 TTCTATAATACATTTCCTAGAGGGATCAAAGACCCTGAAGATATCATTGGAGCTTTATCG 150
Query 697 CTAATCATATATTCCCTCACACTCATCCCTCTCCTCAAATATGTGTTCGTTGTATGCAAA 756
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 151 CTAATCATATATTCCCTCACACTCATCCCTCTCCTCAAGTATGTTTTCGTTGTATGCAAA 210
Query 757 GCAAACGATAATGGGCAAGGTGGTACATTTGCTCTCTATTCTTTGCTCTGTAGACATGCA 816
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 211 GCAAACGATAATGGTCAAGGTGGAACATTTGCTCTCTATTCTTTGCTCTGTAGACATGCA 270
Query 817 AAAGTTAGCACAATTCCGAACCAACACCGTACTGATGAAGAGCTTACTACTTATAGTCGT 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 271 AAAGTTAGCACAATTCCGAACCAACACCGTACTGATGAAGAGCTTACTACTTATAGCCGT 330
Query 877 ACTACATTTCATGAGCGTTCTTTTGCTGCAAAAACCAAGAGATGGTTAGAGAACGGTACC 936
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
Sbjct 331 ACTACATTTCATGAGCATTCTTTTGCTGCAAAAACCAAGAGATGGTTGGAGAAAGGTATC 390
Query 937 TCTAGGAAAAATGCGCTACTTATTCTCGTTCTTGTTGGTACGTGCATGGTGATAGGCGAT 996
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 391 TCTAGGAAAAATGCGCTACTTATTCTCGTTCTAGTCGGTACGTGCATGGTGATTGGCGAT 450
Query 997 GGAATCCTTACTCCCGCCATTTCGGTTCTATCTGCTGCGGGTGGGCTCAGGGTAAACCTA 1056
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GGAATCCTTACTCCTGCCATTTCGGTTCTATCTGCTGCGGGTGGGCTCAGGGTAAACCTT 510
Query 1057 CCTCATATAAACAACGGTATTGTTGTTGTTGTGGCTGTTGTGATATTAGTGAGCTTGTTT 1116
||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 511 CCTCACATAAATAATGGTATTGTTGTTGTTGTGGCAGTTGTGATATTAGTGAGCTTGTTT 570
Query 1117 AGTGTACAACATTATGGAACAGACAGAGTCGGGTGGCTTTTCGCGCCCATTGTATTTCTC 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AGTGTACAACATTATGGAACAGACAGAGTCGGGTGGCTTTTCGCGCCCATTGTATTTCTC 630
Query 1177 TGGTTTCTCTTTATTGCAAGTATCGGTATGTTCAATATATGGAAACATGACCCAAGCGTT 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TGGTTTCTCTTTATTGCAAGTATCGGTATGTTCAATATATGGAAACATGACCCAAGCGTT 690
Query 1237 TTGAAAGCGTTTTCCCCGGTTTATATATTTCGATATTTTAAAAGAGGAGGCCAAGATCGT 1296
|||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 691 TTGAAAGCTTTTTCCCCGGTTTATATATATCGATATTTTAAACGAGGAGGCCAAGATCGC 750
Query 1297 TGGACCTCGCTTGGAGGCATTATGCTTAGTATCACAGGGATTGAAGCTCTCTTTGCGGAT 1356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TGGACCTCACTTGGAGGCATTATGCTTAGTATCACAGGGATTGAAGCTCTCTTTGCGGAT 810
Query 1357 CTCTCTCATTTTCCAGTCTCAGCTGTGCAATTCGCTTTTACTGTAATTGTGTTTCCTTGC 1416
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 811 CTATCTCATTTTCCAGTCTCAGCTGTGCAATTCGCTTTTACTGTAATTGTCTTTCCTTGC 870
Query 1417 CTCCTTTTGGCTTATAGTGGACAAGCTGCATACCTTAGAAAGTACCCGCATCATGTCGAA 1476
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 871 CTCCTTTTGGCGTATAGCGGACAAGCTGCATACCTTAGAAAGTACCCGCATCATGTGGAA 930
Query 1477 GACGCGTTTTATCAATCCATTCCAA 1501
||||||||||||||||| || ||||
Sbjct 931 GACGCGTTTTATCAATCTATACCAA 955
Score = 1517 bits (821), Expect = 0.0
Identities = 909/952 (95%), Gaps = 4/952 (0%)
Strand=Plus/Plus
Query 1844 TCCTCTTATTTACTC-TTCTATCCCTTGTTGTGGAATGCACTTACTTCTCGGCGGTGCTC 1902
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCCTCTTATTTAC-CGTTCTATCCCTTGTTGTGGAATGCACTTACTTCTCGGCGGTGCTC 1014
Query 1903 TTCAAGGTTAACCAAGGTGGATGGGTTCCGCTGGTCATTGCGGCTG-CGTTTCTTGTCAT 1961
|||||||| ||||||||||||||||| ||||||||||| ||||| | ||||||| |||||
Sbjct 1015 TTCAAGGTAAACCAAGGTGGATGGGTCCCGCTGGTCATCGCGGC-GTCGTTTCTCGTCAT 1073
Query 1962 CATGTATGTTTGGCATTATGGAACCCTCAAGAGGTATGAGTTTGAAATGCATAGTAAAGT 2021
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CATGTACGTCTGGCACTATGGAACCCTCAAGAGGTATGAGTTTGAAATGCATAGTAAAGT 1133
Query 2022 CTCCATGGCTTGGATTCTCGGACTCGGTCCTAGCCTTGGTCTTGTCCGTGTTCCTGGGAT 2081
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CTCCATGGCTTGGATTCTCGGGCTCGGTCCTAGCCTTGGTCTTGTCCGTGTTCCTGGGAT 1193
Query 2082 TGGCCTTGTTTACACCGAGCTAGCTAGTGGAGTCCCTCACATTTTCTCTCATTTCATCAC 2141
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1194 TGGCCTTGTTTACACCGAGCTAGCTAGCGGAGTCCCTCACATTTTCTCTCATTTCATCAC 1253
Query 2142 AAACCTGCCGGCAACTCACTCTGTCGTGATCTTTGTCTGCGTCAAGAACCTTCCCGTATA 2201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1254 AAACCTGCCGGCAACTCACTCTGTCGTGATCTTTGTCTGCGTCAAGAACCTTCCCGTCTA 1313
Query 2202 CACCGTTCCCCAGGAAGAACGGTTCCTTGTAAAAAGAATCGGACCCAAAAACTTTCACAT 2261
|||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 1314 CACCGTCCCCCAGGAAGAACGGTTCCTTGTAAAAAGGATCGGACCCAAAACCTTCCACAT 1373
Query 2262 GTTCCGCTGCGTTGCGAGGTACGGATACAGAGACTTGCACAAGAAAGATGACGACTTTGA 2321
|||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1374 GTTCCGCTGCGTCGCGAGATACGGGTACAGAGACTTGCACAAGAAAGACGACGACTTTGA 1433
Query 2322 GAAACGGCTCTTTGAAAGCCTCTTCCTTTTCCTCCGCCTCGAATCGATGATGGAAGGCTG 2381
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1434 GAAACGTCTATTTGAAAGCCTCTTCCTTTTCCTCCGCCTCGAATCAATGATGGAAGGCTG 1493
Query 2382 CTCAGATTCCGAAGATTACAGCGTCTGCGGAAGCCAACAACGACAGTCCAGAGATGGGGT 2441
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CTCGGATTCCGACGATTACAGCGTCTGCGGAAGCCAACAACGACAGTCCAGAGATGGGGT 1553
Query 2442 CAACGGGAATGGGAACGAGATTAGGAACGTGTCGACGTTTGATACATTTGATTCTATAGA 2501
|| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 1554 CACCGGGAATGGGAACGAGAATAGGAACTTGTCGGCGTTTGATACATTTGATTCTATAGA 1613
Query 2502 GTCGGTTATAGCTCCCACTACAACAAAACGGACAAGTCACACAGTGACGGGGTCGAGCCA 2561
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1614 GTCGGTTATAGCTCCCACTGTAACAAAACGGACAAGCCACACAGTGACGGGGTCGAGCCA 1673
Query 2562 AATGAGCGGAGGAGGGGACGAAGTGGAGTTCATAAACGGGTGCAGAGACGCAGGAGTGGT 2621
||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1674 GATGAGCGGAGGAGGGGATGAGGTGGAGTTCATAAACGGCTGCAGAGACGCTGGAGTGGT 1733
Query 2622 GCATATAATGGGGAACACAGTGGTTCGAGCCAGGAGAGAGGCAAGGTTCTACAAGAGGAT 2681
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1734 GCACATAATGGGGAACACAGTGGTTCGAGCCAGGAGAGAAGCAAGGTTCTACAAGAGGAT 1793
Query 2682 AGCCATTGATTATGTTTATGCGTTTCTTAGGAAGATTTGTAGAGAAAACAGTGCCATCTT 2741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1794 AGCCATTGATTATGTTTATGCGTTTCTTAGGAAGATTTGTAGAGAAAACAGTGCCATTTT 1853
Query 2742 CAATGTTCCTCAGGAGAGCCTTTTAAATGTTGGCCAGATTTTCTATGTGTAA 2793
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1854 CAATGTTCCTCAGGAGAGCCTTTTAAATGTCGGCCAGATTTTCTATGTGTAA 1905
> Ahg492879 jgi|Araly1|492879|fgenesh2_kg.7__2312__AT4G19960.1
Length=2678
Score = 403 bits (218), Expect = 3e-111
Identities = 521/663 (79%), Gaps = 38/663 (6%)
Strand=Plus/Plus
Query 1681 AATTGGATCCTCATGATCCTTTGCATAGCTGTCACTGCTGGATTCAAGAACCAGAA-CCA 1739
|||||||| |||||| || ||||| || || |||||| | |||||||| || || |||
Sbjct 1474 AATTGGATACTCATGCTCGGCTGCATCGCGGTTACTGCTAGTTTCAAGAATCA-AAGCCA 1532
Query 1740 GATAGGAAATGCTTATGGGACTGCAGTTGTGATTGTCATGCTCGTGACAACGCTT-CTCA 1798
|| |||||||| |||||||| || ||||| | || ||||| ||||| || || || |
Sbjct 1533 AATCGGAAATGCATATGGGACCGCGGTTGTTCTCGTGATGCTTGTGACCAC-ATTGCTAA 1591
Query 1799 TGATGCTGATCATGATACTTGTTTGGCGA-TGCCATTGGGTTCTAGTCCTCT-TATTTAC 1856
|| || |||||||| | || || |||| | ||||| ||| | || ||||| | |||| ||
Sbjct 1592 TGGTGTTGATCATGCTGCTCGTGTGGC-ATTGCCACTGGATCCTTGTCCT-TATATTCAC 1649
Query 1857 TC-TTCTATCCCT-TGTTGTGGAATGCA-CTTACTTCTCGGCGGTGCTCTTCAAGGTTAA 1913
| |||| ||||| | ||||||||| | | |||||||| || ||| |||| ||| | |
Sbjct 1650 -CGTTCTCTCCCTCT-TTGTGGAAT-TATCGTACTTCTCAGCCGTGATCTTTAAGATCGA 1706
Query 1914 CCAAGGTGGATGGGTTCCGCTGGTCATTGCGGCTGCGT-T-TCTTGTCATCATGT-ATGT 1970
|||| |||||||||||||| |||| || | || | | |||| || | |||| | ||
Sbjct 1707 TGAAGGAGGATGGGTTCCGCTCATCATAGCAG-TG-ATATCTCTTCTCGTAATGTCA-GT 1763
Query 1971 TTGGCATTATGGAACCCTCAAGAGGTATGAGTTTGAAATGCATAGTAAAGTCTCCATG-G 2029
|||||||||| ||| |||||| ||||||||||||||||| || ||||| |||||| |
Sbjct 1764 ATGGCATTATGCAACTGTCAAGAAATATGAGTTTGAAATGCACAGCAAAGTGTCCATGAG 1823
Query 2030 CTTGGATTCTCGGACTCGGTCCTAGCCTTGGTCTTGTCCGTGTTCCTGGGATTGGCCTT- 2088
| ||||| ||||| |||||||| ||||| || ||||||||||| |||||| | || ||
Sbjct 1824 C-TGGATACTCGGCCTCGGTCCCAGCCTCGGGCTTGTCCGTGTCCCTGGGGTCGG-GTTA 1881
Query 2089 GTTTACACCGAGCTAGCTAGTGGAGTCCCTCACATTTTCTCTCATTTCATCACAAACCTG 2148
|| ||||| ||| |||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1882 GTCTACACGGAGTTAGCAAGTGGTGTCCCTCACATTTTCTCTCATTTCATCACCAACCTC 1941
Query 2149 CCGGCAACTCACTCTGTCGT-GATCTTTGTCTGCGTCAAGAACCTTCCCGTATACACCGT 2207
|| |||| |||||| || || | ||||||||||||||||| ||||||| || ||||||||
Sbjct 1942 CCCGCAATTCACTCGGTTGTAG-TCTTTGTCTGCGTCAAGTACCTTCCGGTTTACACCGT 2000
Query 2208 TCCCC-AGGAAGA-ACGGTTCCTTGTAAAAAGAATCGGACCCAAAAACTTTCAC-A-TGT 2263
||| | ||||| | |||| ||| | || ||||||||||| |||||| ||| | | |||
Sbjct 2001 -CCCTGAAGAAGAGA-GGTTTCTTATGAAGAGAATCGGACC-AAAAACATTC-CGAATGT 2056
Query 2264 TCCGCTGCGTTGCGAGGTACGGATACAGAGA-CTTGCACAAGAAAGATGACGACTTT-GA 2321
|||||||||| || || || || |||| ||| || ||||||||||| || || ||| ||
Sbjct 2057 TCCGCTGCGTAGCCAGATATGGTTACAAAGATCTA-CACAAGAAAGACGATGA-TTTCGA 2114
Query 2322 GAA 2324
|||
Sbjct 2115 GAA 2117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108214386045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5