BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31150.1 Length=2197 Score E Sequences producing significant alignments: (Bits) Value Ahg922605 jgi|Araly1|922605|scaffold_103886.1 1240 0.0 > Ahg922605 jgi|Araly1|922605|scaffold_103886.1 Length=772 Score = 1240 bits (671), Expect = 0.0 Identities = 744/778 (96%), Gaps = 9/778 (1%) Strand=Plus/Plus Query 1268 CGCTTGCTTACTTGAATGACATGAAGGAGTGGATACTGAAACAGAATCAAGACCTTAGAA 1327 |||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 CGCTTGCTCATTTGAATGACATGAAGGAGTGGATACTGAAACAGAATGAAGACCTTAGAA 60 Query 1328 ACAAGATTAGGGAGGATGTTAAAGAAATTGTTGTTGGTCCCAAATCACCAGCAGGAGGAG 1387 ||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct 61 ACAAGATTAGGGAGGATGTTAAAGAAA---TTGTTGGTCCCAAAACACCCGCAGGAGGAG 117 Query 1388 CATCTAATCTGCGTCAATCAAACAGGCTTAACACCAA-CAGTAAGGGAAAGACTGATGCA 1446 |||| |||||||| | ||||| ||||||||||||||| || |||| |||||||||||||| Sbjct 118 CATCCAATCTGCGCCGATCAAGCAGGCTTAACACCAATCA-TAAGAGAAAGACTGATGCA 176 Query 1447 TCA-CCTCCTAAGAAAACCGGCAACACAGAAACGCGAAAACGAAAAAGAAAACAGGTAGA 1505 ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 177 TCACCCT-CTAAGAAAACCGGCAACAAAGAAACGCGAAAACGAAAAAGAAAACAGGTAGA 235 Query 1506 GGTTCACTCCTTATCATCTGGAAGCGAGTCAGCCGGTGACATTGAAGGTGAAGAGGATGT 1565 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 236 GGTTCACTCCTTATCAACTGGAAGCGAGTCAGCCGGTGACATTGAAGGTGAAGCGGATGT 295 Query 1566 TCAGAGTACATGGAAAGAGGACGGAAATGCGCCAAGCTCGGGTACATTTGATGAA-TGTG 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 296 TCAGAGTACATGGAAAGAGGACGGAAATGCGCCAAGCTCGGGTACATTTGAT-AAGTGTG 354 Query 1625 ATGATTATGGAGGTGCTCTAAAAATCACTCAGGAAGGTGATGTGATGCAAGAAGAAAGTG 1684 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 355 ATGATTATGGAGATGCTCTAAAAATCACTCAGGAAGGTGATTTGATGCAAGAAGAAAGCG 414 Query 1685 ACTTTGATCACTGTTCTTCAAATTGTACAAAGATGAAAGAATCAATGATGAGAGAGATAG 1744 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 415 ACTTTGATCACTGTTCTTCAAATTGTACAAAGACGAAAGAATCAATGATGAGAGAGATAG 474 Query 1745 AGAACCTTGAACTGAAGCTTCAATTGTATGGAGGACATGGTCTGAATAATTTAACCTACG 1804 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 AGAATCTTGAACTGAAACTTCAATTGTATGGAGGACATGGTCTGAATAATTTAACCTACG 534 Query 1805 ACGAGCTTCTTCATTTTGAGCATCAACTCGAATCTTCTCTCCATATTGCTCGAGCTCATA 1864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 ACGAGCTTCTTCATTTTGAGCATCAACTCGAATCTTCTCTCCATATTGCTCGAGCTCATA 594 Query 1865 AGCAGGAGCAGCAGCAACAACAAACAGACAAGCTTAAGGAGAATCTCATGGTGTGTCAAA 1924 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 595 AGCAGGAGCAGCAGCAACAACAAACAGACAAGCTTAAGGAAAATCTCATGGTGTGTCAAA 654 Query 1925 GGCACGAAGATGATGACATCATGCACCGGCAAGTGAAGAAGGAGAACCCACCGGCGTTCT 1984 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 655 GGCAAGAAGATGATGACATCATGCACCGGCAAGTGAAGAAGGAGAACCCACCGGTGTTCT 714 Query 1985 TCAGCTCCTCCCGCCGCCACAACCAGCCCCAAGACTAGGACAACAACTTCTCCCTATC 2042 |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 715 TCAGCTCCTCTTGCCGCCACAACCAGCCCCAAGACTAGGACAACAACTTCTCTCTATC 772 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82693921895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5