BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31150.1
Length=2197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922605 jgi|Araly1|922605|scaffold_103886.1 1240 0.0
> Ahg922605 jgi|Araly1|922605|scaffold_103886.1
Length=772
Score = 1240 bits (671), Expect = 0.0
Identities = 744/778 (96%), Gaps = 9/778 (1%)
Strand=Plus/Plus
Query 1268 CGCTTGCTTACTTGAATGACATGAAGGAGTGGATACTGAAACAGAATCAAGACCTTAGAA 1327
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 CGCTTGCTCATTTGAATGACATGAAGGAGTGGATACTGAAACAGAATGAAGACCTTAGAA 60
Query 1328 ACAAGATTAGGGAGGATGTTAAAGAAATTGTTGTTGGTCCCAAATCACCAGCAGGAGGAG 1387
||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 61 ACAAGATTAGGGAGGATGTTAAAGAAA---TTGTTGGTCCCAAAACACCCGCAGGAGGAG 117
Query 1388 CATCTAATCTGCGTCAATCAAACAGGCTTAACACCAA-CAGTAAGGGAAAGACTGATGCA 1446
|||| |||||||| | ||||| ||||||||||||||| || |||| ||||||||||||||
Sbjct 118 CATCCAATCTGCGCCGATCAAGCAGGCTTAACACCAATCA-TAAGAGAAAGACTGATGCA 176
Query 1447 TCA-CCTCCTAAGAAAACCGGCAACACAGAAACGCGAAAACGAAAAAGAAAACAGGTAGA 1505
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 TCACCCT-CTAAGAAAACCGGCAACAAAGAAACGCGAAAACGAAAAAGAAAACAGGTAGA 235
Query 1506 GGTTCACTCCTTATCATCTGGAAGCGAGTCAGCCGGTGACATTGAAGGTGAAGAGGATGT 1565
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 236 GGTTCACTCCTTATCAACTGGAAGCGAGTCAGCCGGTGACATTGAAGGTGAAGCGGATGT 295
Query 1566 TCAGAGTACATGGAAAGAGGACGGAAATGCGCCAAGCTCGGGTACATTTGATGAA-TGTG 1624
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 296 TCAGAGTACATGGAAAGAGGACGGAAATGCGCCAAGCTCGGGTACATTTGAT-AAGTGTG 354
Query 1625 ATGATTATGGAGGTGCTCTAAAAATCACTCAGGAAGGTGATGTGATGCAAGAAGAAAGTG 1684
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 355 ATGATTATGGAGATGCTCTAAAAATCACTCAGGAAGGTGATTTGATGCAAGAAGAAAGCG 414
Query 1685 ACTTTGATCACTGTTCTTCAAATTGTACAAAGATGAAAGAATCAATGATGAGAGAGATAG 1744
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 415 ACTTTGATCACTGTTCTTCAAATTGTACAAAGACGAAAGAATCAATGATGAGAGAGATAG 474
Query 1745 AGAACCTTGAACTGAAGCTTCAATTGTATGGAGGACATGGTCTGAATAATTTAACCTACG 1804
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AGAATCTTGAACTGAAACTTCAATTGTATGGAGGACATGGTCTGAATAATTTAACCTACG 534
Query 1805 ACGAGCTTCTTCATTTTGAGCATCAACTCGAATCTTCTCTCCATATTGCTCGAGCTCATA 1864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ACGAGCTTCTTCATTTTGAGCATCAACTCGAATCTTCTCTCCATATTGCTCGAGCTCATA 594
Query 1865 AGCAGGAGCAGCAGCAACAACAAACAGACAAGCTTAAGGAGAATCTCATGGTGTGTCAAA 1924
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 595 AGCAGGAGCAGCAGCAACAACAAACAGACAAGCTTAAGGAAAATCTCATGGTGTGTCAAA 654
Query 1925 GGCACGAAGATGATGACATCATGCACCGGCAAGTGAAGAAGGAGAACCCACCGGCGTTCT 1984
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 655 GGCAAGAAGATGATGACATCATGCACCGGCAAGTGAAGAAGGAGAACCCACCGGTGTTCT 714
Query 1985 TCAGCTCCTCCCGCCGCCACAACCAGCCCCAAGACTAGGACAACAACTTCTCCCTATC 2042
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 715 TCAGCTCCTCTTGCCGCCACAACCAGCCCCAAGACTAGGACAACAACTTCTCTCTATC 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82693921895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5