BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G31170.4

Length=866
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473615 jgi|Araly1|473615|fgenesh2_kg.1__3569__AT1G31170.1         628    1e-179


> Ahg473615 jgi|Araly1|473615|fgenesh2_kg.1__3569__AT1G31170.1
Length=523

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 364/376 (97%), Gaps = 0/376 (0%)
 Strand=Plus/Plus

Query  98   AGGAGACGGCGACAATGGCGAATTTGATGATGAGATTACCAATTAGCTTGAGAAGCTTCT  157
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1    AGGAGACGGCGACAATGGCGAATTTGATGATGAGATTACCAATTAGCTTAAGAAGCTTCT  60

Query  158  CTGTTTCAGCTTCTTCATCCAACGGTTCGCCGCCGGTGATCGGAGGATCTAGCGGCGGTG  217
            ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  61   CTGTTTCAGCTTCTTCATCTAACGGTTCCCCGCCGGTGATCGGAGGATCTAGCGGCGGTG  120

Query  218  TAGGACCGATGATTGTGGAATTACCGTTGGAGAAGATACGAAGACCGTTGATGCGAACCA  277
            |||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  121  TAGGACCGATAATAGTGGAATTACCGTTGGATAAGATACGAAGACCGTTGATGCGAACCA  180

Query  278  GATCCAACGATCAGAACAAAGTGAAAGAGCTTATGGATAGTATCCGTCAAATCGGTCTTC  337
            ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  181  GATCCAATGATCAGAACAAAGTGAAGGAGCTTATGGATAGTATCCGTCAAATCGGTCTTC  240

Query  338  AAGTTCCGATTGATGTGATTGAAGTTGATGGAACTTACTATGGGTTCTCGGGATGTCACA  397
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct  241  AAGTTCCGATTGATGTGATTGAAGTTGATGGAACTTACTATGGGTTCTCGGGTTGTCACC  300

Query  398  GATACGAGGCGCATCAGAAGCTAGGGCTTCCAACTATACGTTGCAAAATCCGTAAAGGAA  457
            | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  301  GGTACGAGGCGCATCAGAAGCTAGGGCTTCCAACTATACGTTGCAAAATTCGTAAAGGAA  360

Query  458  CAAAGGAAACATTAAG  473
            ||||||||||||||||
Sbjct  361  CAAAGGAAACATTAAG  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32061373197


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5