BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31175.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922595 jgi|Araly1|922595|scaffold_103876.1 577 1e-163
Ahg488255 jgi|Araly1|488255|fgenesh2_kg.6__1389__AT5G14210.1 488 6e-137
Ahg313968 jgi|Araly1|313968|fgenesh1_pm.C_scaffold_1002748 435 8e-121
> Ahg922595 jgi|Araly1|922595|scaffold_103876.1
Length=469
Score = 577 bits (312), Expect = 1e-163
Identities = 424/473 (90%), Gaps = 28/473 (6%)
Strand=Plus/Plus
Query 1403 CTTTGGAATTATGCAGGAAAATGGCTAAAACAGAGGGCGATGTGTACAACTTTGGATTCA 1462
||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1 CTTTGGAATTACGCAGGAAAATGGCTAAAAGAGAGGACGATGTGTACAACTTTGGATTCA 60
Query 1463 TACTTCTGGAATCTCTGATAGGACCAGTACCTACTACAAAAAGGAGAGGCCTATCTTCTC 1522
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 61 TACTTCTGGAATCTCTGATAGGACCAGTGCCTACTAC-AAAAGGAGAGGCCTATCTTCTC 119
Query 1523 AACGAAATGGTATCATATAGGGTAAAGAAAAG-AAGCAA-----ATC--------TT-C- 1566
||||||||||||||| ||| | ||| ||||| |||||| ||| || |
Sbjct 120 AACGAAATGGTATCAAATA--GAAAAAAAAAGAAAGCAATCTTCATCATTGTTATTTGCT 177
Query 1567 ----ATCAT--T-GTTAATAGCTGTTGCTGCAATGTTGTATTTGCAGACGTCATTTGGGA 1619
||||| | ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 TTAAATCATGGTGGTTAATAGCTGTTGCTGCAATGTTGCATTTGCAGACGTCATTTGGGA 237
Query 1620 GCCAAGACTGTCGACAGAAAATAGGAAGTCCAACGGTCCTAACAACAAGCTCGCAGGAGT 1679
|||||||| || | ||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 238 GCCAAGACGGTTGGCAGAAAACAGTAAGTCCAACGGTCCTAACAACAAGCTCGCGGGAGT 297
Query 1680 CTTTACCCAATTGCCATCTCAATCGCCAATAAATGTGTTTTGCTTGAACCTTCTGCAAGA 1739
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTTTA-TCGATTGCCATCTCAATCGCCAATAAATGTGTTTTGCTTGAACCTTCTGCAAGA 356
Query 1740 C-TTCCTTTAAAGATGTTCTCTGGAACTTACCATATGCAGCTCAAATGCAGTCTGCCGCA 1798
| ||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 357 CCTTCCTTTGAAGATGTTCTCCGGAACTTACAATATGCATCTCAAATGCAGTCTGCCGCA 416
Query 1799 GACGCTGAACGCAAATCTGATAAGTCGTCGTGAATCCAAAGGCTAACCTGATG 1851
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 417 GACGCTGAACGCAAATCTGATACGTCGTCGTGAATCCAAAGGCTAACCTGATG 469
> Ahg488255 jgi|Araly1|488255|fgenesh2_kg.6__1389__AT5G14210.1
Length=2564
Score = 488 bits (264), Expect = 6e-137
Identities = 325/354 (92%), Gaps = 5/354 (1%)
Strand=Plus/Plus
Query 1606 GACGTCATTTGGGAGCCAAGACTGTCGACAGAAAATAGGAAGTCCAACGGTCCTAACAAC 1665
||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||
Sbjct 2214 GACATCATTTGGGAGCCAAGACGGTCGGCAGAAAATAGTAAGTCCAACGGTCCTAACAAC 2273
Query 1666 AAGCTCGCAGGAGTCTTTACCCAATTGCCATCTCAATCGCCAATAAATGTGTTTTGCTTG 1725
||||||||||||||||||| | | |||| |||||||||||||||||||||||||||||||
Sbjct 2274 AAGCTCGCAGGAGTCTTTATCGA-TTGCGATCTCAATCGCCAATAAATGTGTTTTGCTTG 2332
Query 1726 AACCTTCTGCAAGAC-TTCCTTTAAAGATGTTCTCTGGAACTTACCATATGCAGCTCAAA 1784
||||||| ||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||
Sbjct 2333 AACCTTCCGCAAGACCTTCCTTTGAAGATGTTCTCTGGAACTTACAATACGCAGCTCAAA 2392
Query 1785 TGCAGTCTGCCGCAGACGCTGAACGCAAATCTGATAAGTCGTCGTGAATCCAAAGGCTAA 1844
|||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 2393 TGCAGTCTGCCGCAGATGCTGAACGCAAATCTGATACGTCGTCGTGAATCCCAAGGCTAA 2452
Query 1845 CCTGATGATTGATAGTTGTTTTCGGATTTATAAATGTTATGTTTTATAAGTTTGGTTTTT 1904
||| ||||||||||||| ||| ||| ||| ||||||| | ||||||||||||||||||||
Sbjct 2453 CCTAATGATTGATAGTT-TTT-CGGTTTTTTAAATGTAAAGTTTTATAAGTTTGGTTTTT 2510
Query 1905 CAGTAGAAAAATGTAATACTCTAGCGGCTAAAAAACATAGTTTCTTGTCT-CTC 1957
||||| |||||||||| ||||| ||| ||||||| ||||||||||||||| |||
Sbjct 2511 CAGTATAAAAATGTAAGACTCTTGCGACTAAAAATCATAGTTTCTTGTCTTCTC 2564
Score = 407 bits (220), Expect = 2e-112
Identities = 344/398 (86%), Gaps = 31/398 (8%)
Strand=Plus/Plus
Query 1033 CTTTTCCATTATTGGCAGTCATGATCAGCATCAAGAATTCGTAAT-CGAAGAGGCTGAAA 1091
||| ||||| |||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 1095 CTTGTCCATAATTGGCAGTCATGATCAGCATCAAGAGTTC-TTATGTGAAGAGGCTGAAA 1153
Query 1092 CTGAGGGAAAACAGTTCCAAGGAAGAAAGATTGGGATTTTGGTTGCTGTCCTTGGTGGA- 1150
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1154 ATGAGGGAAAACAGTTCCAAGGAAGAAAGGTTGGGATTTTGATTGCTGTAATTGGTGGAG 1213
Query 1151 --G--AT-G-TATT-TG-TTCTTG---T-G---------TG-TAT----AAACCGCTGCT 1184
| | | | || || || ||| | | || ||| |||||||||||
Sbjct 1214 GTGTTCTCGTTCTTGTGTTTTTTGTATTAGTAATCCTCCTGTTATGCACAAACCGCTGCT 1273
Query 1185 CTTGCTGTTGTTCAAGAGAAAGGTCAGTGCCTCAAACTCGGCTTAAGGTTGTGACAGAGA 1244
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 1274 CTTGCTGTTGTTCAAGAGAAAAGTCAGTGCCGCAAACTCGGCTTAAGGTTGTGAC--AGA 1331
Query 1245 TAACTCACACACCAGTCTCTCCTCCGAAGTTCTTGCTAGTGCAAGGTTAATCTCTCAAGC 1304
||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 1332 TAATTCACACACCAGTCTCTCAGCTGAAGTTCTTGCTAGTGCAAGGTTAATCTCTCAAAC 1391
Query 1305 AGCAAAGCTAGGTGCACAAGGTGTGCCCTCATTCCGGTCATTTTCTTTTGAAGAGTTAAA 1364
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1392 AGCAAAGCTAGGTGCACAAGGTGCGCCCTCATGCCGGTCATTTTCTTTTGAAGAGTTAAA 1451
Query 1365 GGAAGCCACAGACGATTTCGATTCATCACGTTTCTTAG 1402
|||||||||||||||||| |||||||||||||||||||
Sbjct 1452 GGAAGCCACAGACGATTTTGATTCATCACGTTTCTTAG 1489
Score = 272 bits (147), Expect = 7e-72
Identities = 203/228 (89%), Gaps = 12/228 (5%)
Strand=Plus/Plus
Query 818 CCAGAAGTTTTGGTTG-TTTGTCTCAGCTTCAGCATCTTGACTTGACGTTCAATCATCTG 876
||||| |||||| | |||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 824 CCAGACCTTTTGG-CGCTTTGTCTCAGCTTCAGCATCTTGATTTGTCGTTCAATCATTTG 882
Query 877 ACTGGAACTTCATCTCGGTTCTTGTTCTCTTTGCCAAACATTAGTTACTTAGACTTTGCA 936
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 883 ACTGGAACTCCATCTCGGTTCTTGTTCTCTTTGCCAAACATTAGTTACTTGGACTTGGCA 942
Query 937 TCTAACAAGCTCAGTGGGAAGCTA-CAGCATAATCTGACCTGTGGAGGCAAACTTGGATT 995
||||||| |||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 943 TCTAACATGCTCAGTGGGAAGCTACCA-CTTAATCTGACCTGTGGAGGCAAACTTGGATT 1001
Query 996 TGT--------CGAATAACAGATTAATTGGGACCCCTCCCCGTTTCTT 1035
||| |||||||||||||||||||||| |||||||||| |||
Sbjct 1002 TGTGGATTTGTCGAATAACAGATTAATTGGGACTCCTCCCCGTTGCTT 1049
Score = 195 bits (105), Expect = 1e-48
Identities = 126/136 (93%), Gaps = 1/136 (1%)
Strand=Plus/Plus
Query 1403 CTTTGGAATTATGCAGGAAAATGGCTAAAACAGAGGGCGATGTGTACAACTTTGGATTCA 1462
|||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 2087 CTTTGGGATTATGCAGGAAAATGGCTAAAAGAGAGGACGATGTGTACAACTTCGGATTCA 2146
Query 1463 TACTTCTGGAATCTCTGATAGGACCAGTACCTACTACAAAAAGGAGAGGCCTATCTTCTC 1522
|||||||||||||||||||||||||||| || ||||||||| |||||||| |||||||||
Sbjct 2147 TACTTCTGGAATCTCTGATAGGACCAGTGCCCACTACAAAA-GGAGAGGCTTATCTTCTC 2205
Query 1523 AACGAAATGGTATCAT 1538
||||||||| |||||
Sbjct 2206 AACGAAATGACATCAT 2221
> Ahg313968 jgi|Araly1|313968|fgenesh1_pm.C_scaffold_1002748
Length=327
Score = 435 bits (235), Expect = 8e-121
Identities = 253/262 (97%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 96 ATCTTGCGATCGGTTGGAGGAAGCGTTGTTGCAGTGCCACCGTCGGATGCCGGAAGGACC 155
|||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 66 ATCTTGCGATCGGTTGCAGGAAGCGTTGTTGCAGTGCCACCGTCGGATGCCTGAGGGACC 125
Query 156 GGCAAGGAGATCCGGTTGCAGACATTTGAACAAGGCGTTTGCGGAGTGCGTGGTGGCGGA 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 126 GGCAAGGAGATCCGGTTGCAGACATTTGAACAAGGCGTTTGCGGAGTGCGTGGTGGCTGA 185
Query 216 GGCTTGTCCGGAGGAATCAGAGGCGGTGAGGTCTCTTTGCTCTAGCGGCGGAACAAGCCT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GGCTTGTCCGGAGGAATCAGAGGCGGTGAGGTCTCTTTGCTCTAGCGGCGGAACAAGCCT 245
Query 276 TAAGCGTAAACAGTGCGAATACGCTCAGCTTTCACTTTCTCTCTGTCTCTCTCGCCATCA 335
||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct 246 TAAGCGTAAACAGTGCGAAGACGCTCAGCTTTCACTTTCTCTCTGTCTTTCTCGTCATCA 305
Query 336 GCGAGAGTTTGAGCAGCGTTAG 357
| |||| |||||||||||||||
Sbjct 306 GAGAGAATTTGAGCAGCGTTAG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5