BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31190.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922594 jgi|Araly1|922594|scaffold_103875.1 1777 0.0
> Ahg922594 jgi|Araly1|922594|scaffold_103875.1
Length=1135
Score = 1777 bits (962), Expect = 0.0
Identities = 1066/1116 (96%), Gaps = 7/1116 (1%)
Strand=Plus/Plus
Query 114 GGAAACATGTCATTGAGAATCTCTCACTTACCCAGATCATCTCTTCCGCTGCAAAACCCA 173
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 GGAAGCATGTCAATGAGAATCTCTCACTTACCCAGATCATCTCTTCCGCTGCAAAACCCA 83
Query 174 ATTTCAGGCCGGACAGT-GAACAGAACTTTCCGATATCGGTGTACGAGGATTTTGTCTAA 232
||||| |||||||| | ||||||| ||||||| || ||||| ||| ||||||||||||
Sbjct 84 TTTTCATGCCGGACA-TCAAACAGAAATTTCCGACATGGGTGTTCGACGATTTTGTCTAA 142
Query 233 TAGCTTCAAGTCCACAACGAGACTTCAAACCAAAGCTGTTCTGTCTGAGGTTTCTGATCA 292
|||||||||||||| | ||||||||||| |||||| || |||||||| ||||||||||
Sbjct 143 CAGCTTCAAGTCCACTTCAAGACTTCAAACAAAAGCTCTTGTGTCTGAGATTTCTGATCA 202
Query 293 GACGCGA-TATCCCAGAATCGGCGCTAAAACCACCGGAACTATATCTCCGGCACACCTCC 351
||||| | ||||| ||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 203 GACGC-ATTATCCTAGAATCGGCGCTAAATCCACCGGAACTATATCGCCGGCACATCTCC 261
Query 352 TTGAAGTCGTTGAACTCGCCGCTAAAACCGGCGCTGAGGTGGTTATGGAAGCTGTAAATA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TTGAAGTCGTTGAACTCGCCGCTAAAACCGGCGCTGAGGTGGTTATGGAAGCTGTAAATA 321
Query 412 AGCCAAGGAATATTACTTATAAAGGTCTCAGTGACTTAGTAACTGATACTGATAAAGCAA 471
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 AGCCAAGGAATATCACTTATAAAGGTCTCAGTGACTTAGTAACTGATACTGATAAAGCAA 381
Query 472 GCGAGGCTGCTATTTTGGAAGTAGTGAAGAAGAATTTTAGTGATCATCTTATTCTTGGTG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GCGAGGCTGCTATTTTGGAAGTAGTGAAGAAGAATTTTAGTGATCATCTTATTCTTGGTG 441
Query 532 AAGAAGGAGGTATCATCGGCGATTCGTCTTCTGATTACCTCTGGTGCATTGATCCTCTAG 591
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 AAGAAGGAGGTATTATCGGCGATTCGTCTTCTGATTACCTCTGGTGCATTGATCCTCTAG 501
Query 592 ATGGAACTACAAATTTTGCTCATGGATATCCCAGTTTTGCTGTTTCCGTCGGTGTTCTGT 651
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 502 ATGGAACAACAAATTTTGCTCATGGATATCCCAGTTTTGCTGTTTCTGTCGGTGTTCTGT 561
Query 652 ATCGTGGAAATCCCGCCGCTGCTTCTGTGGTAGAGTTTGTCGGTGGTCCGATGTGCTGGA 711
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 562 ATCGTGGAAACCCCGCCGCTGCTTCTGTGGTTGAGTTTGTCGGTGGTCCGATGTGTTGGA 621
Query 712 ACACTCGAACCTTTTCTGCAACTGCAGGTGGTGGAGCATTGTGTAACGGGCAAAAAATTC 771
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 622 ACACTCGAACCTTTTCTGCAACAGCAGGTGGTGGAGCATTGTGTAACGGGCAAAAAATTC 681
Query 772 ATGTCAGT-AAGACCGATGCTGTGGAGAGAGCACTTCTTATCACAGGGTTTGGTTATGAA 830
|||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 682 ATGTCAGTGAAG-CTGATGCTGTGGAGAGAGCACTTCTTATCACCGGGTTTGGTTATGAA 740
Query 831 CATGATGATGCATGGAGCACTAACATGGAACTGTTCAAAGAGTTTACTGATGTGAGTCGG 890
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CATGATGATGCATGGAGTACTAACATGGAACTGTTCAAAGAGTTTACTGATGTGAGTCGG 800
Query 891 GGAGTGCGAAGACTCGGTGCTGCTGCAGTTGACATGTGTCATGTTGCACTTGGGATTGCG 950
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 801 GGAGTGCGAAGACTCGGTGCTGCAGCAGTTGACATGTGTCATGTGGCACTTGGGATTGCG 860
Query 951 GAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTATAGTT 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTATAGTT 920
Query 1011 GAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGG 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGG 980
Query 1071 TCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCAAGCTTCTGGAAAGAATTGCACCCGCA 1130
||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 981 TCTGTTTTGGTTTCCAACGGCGTTCTTCACTCCAAGCTTCTGGAGAGAATTGCACCCGCA 1040
Query 1131 ACTGAGAATTTGAAGTCGAAAGGAATCGATTTCTCGTTATGGTTCAAACCGGAAGATTAT 1190
|||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 1041 ACTGAGAATTTGAAGTTGAAAGGAATCGATTTCTCGCTGTGGTTTAAACCGGAAGATTAT 1100
Query 1191 CATACAGAGCTTTAAGACTTGTTCAAGAAAGGTATA 1226
|||||||||||||||||||||||||| | |||||||
Sbjct 1101 CATACAGAGCTTTAAGACTTGTTCAA-AGAGGTATA 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5