BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31220.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476184 jgi|Araly1|476184|fgenesh2_kg.2__1314__AT1G31220.1 1788 0.0
Ahg473612 jgi|Araly1|473612|fgenesh2_kg.1__3566__AT1G31220.1 1605 0.0
> Ahg476184 jgi|Araly1|476184|fgenesh2_kg.2__1314__AT1G31220.1
Length=1203
Score = 1788 bits (968), Expect = 0.0
Identities = 1123/1198 (94%), Gaps = 9/1198 (1%)
Strand=Plus/Plus
Query 225 CACTTATTCCGACAAAACCCTCTGATTAGACCGTCGGAATGGAATCACGGGTTTTGTTCT 284
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 6 CACTTATTCCGACAAAAACCTCCGATTAGACCGTCGGAATGGAATCACGGGTTTTGTTCT 65
Query 285 CTAGTCAATTCAACTTCCCGGTGAATTCACCGTTTAAGACCCGTGAAACCTCGATTGCTC 344
| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 66 CGAGTCAATTCAACTTCCCGGTGAATTCACCGTTGAAGAACCGTGAAACCTCGATTGCTC 125
Query 345 CGCTCACACCTTCCCGGAATGTTCTCTCCTTCTCTTTCCGTAGTCCCGCAGAGAGATGTG 404
|| |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||| ||
Sbjct 126 CGTTCACACCTCCCCGGAATGTTCTCTCCTTGTCTTTCCGAAGTCCCGCAGACAGATTTG 185
Query 405 CGATGAGGATTGTA-C-CG--C--TTGTAAAAGCTGCTTCGTCTACTCCACAGATAGTAG 458
|| ||||||| | | | || | |||||||||||| ||||| | ||||| |||||||||
Sbjct 186 CGGTGAGGATCGGACCGCGACCGTTTGTAAAAGCTGTTTCGTTTGCTCCAAAGATAGTAG 245
Query 459 CGGAGGTC---GATGGTTCGTCTCACGAACCAAGAAGGAAGAAGCTTGCTGTGTTTGTGT 515
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 246 CGGAGGTCGATGATGGTTCGAGAGACGAACCAAGAAGGAAGAAGCTTGCTGTGTTTGTGT 305
Query 516 CGGGAGGTGGTTCAAATTTCAGGAAGATTCATGAGGGATGCAGTGATGGTTCTGTTAATG 575
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CGGGAGGTGGTTCGAATTTCAGGAAGATTCATGAGGGATGCAGTGATGGTTCTGTTAATG 365
Query 576 GTGATGTTGTTTTGTTGGTCACTAACAAAAAAGATTGTGGAGGTGCTGAGTATGCAAGAA 635
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GGGATGTTGTTTTGTTGGTCACTAACAAAAAAGATTGTGGAGGTGCTGAGTATGCAAGAA 425
Query 636 GTAATGGAATTCCTGTTTTAGTATTCCCAAAAGCGAAACGAGAACCATCTGATGGACTCT 695
|||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 426 GTAACGGCATTCCTGTTTTAGTATTCCCAAAAGCGAAACGAGAATCATCCGATGGACTCT 485
Query 696 CTCCTTCAGAACTTGTAGATGTACTAAGGAAATATGGTGTAGACTTTGTTCTTTTAGCTG 755
|||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 486 CTCCTTCAGAGCTTGTAGATGTACTTAGAAAATATGGTGTAGAATTTGTTCTTTTAGCTG 545
Query 756 GATATTTGAAACTTATACCGGTCGAGCTGGTCCAAGCTTTTCCTAAACGGATTCTAAATA 815
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 546 GATATTTGAAACTTATACCGGTCGAGCTGGTTCAAGCATTTCCTAAACGGATTCTAAATA 605
Query 816 TTCATCCTGCTCTTCTTCCGGCTTTCGGAGGCAAAGGTCTTTATGGTATAAAAGTGCATA 875
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 606 TTCATCCTGCTCTTCTTCCGGCTTTCGGAGGCAAAGGTCTTTATGGTATAAGAGTGCATA 665
Query 876 AAGCTGTTCTAGAATCGGGAGCTAGATATTCGGGTCCGACAATTCACTTCGTCAATGAGG 935
||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 666 AAGCTGTTCTAGAATCGGGAGCTAGATATTCAGGTCCGACAATTCACTTTGTCGATGAGG 725
Query 936 AGTACGATACAGGTCGGATACTTGCTCAAAGTGCAGTCCGTGTGATTGCTAATGATACAC 995
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 726 AGTACGACACAGGGCGGATACTTGCTCAAAGTGCAGTCCGAGTGATTGCTAATGATACAC 785
Query 996 CAGAAGAATTGGCCAAAAGGGTTCTTCATGAGGAACACAAACTGTATGTCGAGGTGGTGG 1055
|||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 786 CAGAGGAGTTGGCCAAAAGAGTTCTTCATGAGGAACACAAACTCTATGTCGAAGTGGTGG 845
Query 1056 GTGCGATTTGCGAAGAGCGGATTAAATGGAGAGAAGACGGTGTCCCTCTCATTCAAAACA 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 846 CTGCGATTTGCGAAGAGCGGATTAAATGGAGAGAAGACGGTGTCCCTCTCATTCAGAGCA 905
Query 1116 AACAAAACCCTGACGAGTACTATTAGATTCTCAACAAATGAAGTTATTCATTGGATGTTA 1175
|| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 906 AAGAAAACCCTGACGAGTACTATTAGATCCTCAACAAATGAAGTTACTCATTGGATGTCA 965
Query 1176 GATTAGTCACATTTTCAAAACAAAGTGTTTCAACATAGGTTATGTAGAAGAAGttttttt 1235
||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||
Sbjct 966 GATTAGTCACATTTTCAAATCAAAGTGTTTCAGCCTAGGTTATGTAGAAGAAGTTTTCTT 1025
Query 1236 GCCCGAAGTATAGATTGAGACATGTTTCTGATACTAAATTTTGTTTCGGTTGGGTCAGAA 1295
|||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||
Sbjct 1026 GCCCAAAGTATAGATTGAGAAATGTTTCTGATGCTAAATTTTGTTTCGATTGGGTCAGAA 1085
Query 1296 TCATATGGAAGGAGATGAAATTCGAGTCAGGAGACAGCATTTTAATGCTTGTGTTGTATA 1355
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1086 TCAAATGGAAGGAGATGAAATTCGAGCCAGGAGACAGCATTTTAATGCTTGTGTTGTATA 1145
Query 1356 ATACCAACAGTCTTTATTCAATTTTTTCCTAGAATGTTTTATTACCTTGAAGTTTGGT 1413
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1146 ATACCAACAGCCTTTATTCAATTTTTTCCTAGAGTGTTTTATTACCATGAAGTTTGGT 1203
> Ahg473612 jgi|Araly1|473612|fgenesh2_kg.1__3566__AT1G31220.1
Length=1152
Score = 1605 bits (869), Expect = 0.0
Identities = 1084/1182 (92%), Gaps = 37/1182 (3%)
Strand=Plus/Plus
Query 236 ACAAAACCCTCTGATTAGACCGTCGGAATGGAATCACGGGTTTTGTTCTCTAGTCAATTC 295
|||||| |||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 4 ACAAAAACCTCCGATTAGACCGTCGGAATGGAATCACGGGTTTGGTTCTCGAGTCAATTC 63
Query 296 AACTTCCCGGTGAATTCACCGTTTAAGACCCGTGAAACCTCGATTGCTCCGCTCACACCT 355
||||||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 64 AACTTCCCGGTGAATTCGCCGTTGAAGACCCGTGAAACCTCGATTGCTCCGTTTACACCT 123
Query 356 TCCCGGAATGTTCTCTCCTTCTCTTTCCGTAGTCCCGCAGAG-AGATGTGCGATGAGGAT 414
||||||||||||||||||||||||||| |||| ||||| | |||| ||||||||||||
Sbjct 124 CCCCGGAATGTTCTCTCCTTCTCTTTCCCAAGTCACGCAG-GCAGATTTGCGATGAGGAT 182
Query 415 TGTACCGCTTGTAAAAGCTGCTTCGTCTACTCCACAGATAGTAGCGGAGGTCGATGGTTC 474
|| ||||||||||||||||| ||||| | || || |||||||||||||||||||||||||
Sbjct 183 TGGACCGCTTGTAAAAGCTGTTTCGTTTGCTACAAAGATAGTAGCGGAGGTCGATGGTTC 242
Query 475 GTCTCACGAACCAAGAAGGAAGAAGCTTGCTGTGTTTGTGTCGGGAGGTGGTTCAAATTT 534
| |||| || |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 243 GAGAGACGAGCCTAGAAGGAAGAAGCTTGCTGTGTTTGTTTCGGGAGGTGGTTCGAATTT 302
Query 535 CAGGAAGATTCATGAGGGATGCAGTGATGGTTCTGTTAATGGTGATGTTGTTTTGTTGGT 594
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 303 CAGGAAGATTCATGAGGGATGCAGTGATGGTTCTGTTAATGGGGATGTTGTTTTGTTGGT 362
Query 595 CACTAACAAAAAAGATTGTGGAGGTGCTGAGTATGCAAGAAGTAATGGAATTCCTGTTTT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CACTAACAAAAAAGATTGTGGAGGTGCTGAGTATGCAAGAAGTAATGGAATTCCTGTTTT 422
Query 655 AGTATTCCCAAAAGCGAAACGAGAACCAT-CTGATGGACTCTCTCCTTCAGAACTTGTAG 713
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 423 AGTATTCCCAAAAGCGAAACGAGAACCATTC-GATGGACTCTCTCCTTCAGAGCTTGTAG 481
Query 714 ATGTACTAAGGAAATATGGTGTAGACTTTGTTCTTTTAGCTGGATATTTGAAACTTATAC 773
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ATGTACTTAGGAAATATGGGGTAGACTTTGTTCTTTTAGCTGGATATTTGAAACTTATAC 541
Query 774 CGGTCGAGCTGGTCCAAGCTTTTCCTAAACGGATTCTAAATATTCATCCTGCTCTTCTTC 833
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CGGTCGAGCTTGTCCAAGCATTTCCTAAACGGATTCTAAATATTCATCCTGCTCTTCTTC 601
Query 834 CGGCTTTCGGAGGCAAAGGTCTTTATGGTATAAAAGTGCATAAAGCTGTTCTAGAATCGG 893
||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 602 CGGCTTTTGGAGGCAAAGGTCTGTATGGTATAAGAGTGCATAAAGCTGTTCTAAAATCGG 661
Query 894 GAGCTAGATATTCGGGTCCGACAATTCACTTCGTCAATGAGGAGTACGATACAGGTCGGA 953
||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 662 GAGCTAGATATTCAGGTCCCACAATTCACTTTGTCGATGAGGAGTACGATACAGGTCGGA 721
Query 954 TACTTGCTCAAAGTGCAGTCCGTGTGATTGCTAATGATACACCAGAAGAATTGGCCAAAA 1013
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 722 TACTTGCTCAAAGTGCAGTCCGTGTGATCGCTAATGATACACCAGAAGAATTGGCTAAAA 781
Query 1014 GGGTTCTTCATGAGGAACACAAACTGTATGTCGAGGTGGTGGGTGCGATTTGCGAAGAGC 1073
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 782 GGGTTCTTCATGAGGAACACAAGCTGTATGTCGAGGTGGTGGCTGCGATTTGCGAAGAGC 841
Query 1074 GGATTAAATGGAGAGAAGACGGTGTCCCTCTCATTCAAAACAAACAAAACCCTGACGAGT 1133
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 842 GGATTAAATGGAGAGAAGACGGTGTCCCTCTCATTCAAAGCAAAGAAAACCCTGACGAGT 901
Query 1134 ACTATTAGATTC-TCAACAAATGAAGTTATTCATTGGATGTTAGATTAGTCACATTTTCA 1192
|||||||||| | || ||||||||||||| |||| | | || | |
Sbjct 902 ACTATTAGAT-CATCTACAAATGAAGTTA--CATT---T-T---------CA-A-----A 939
Query 1193 AAACAAAGTGTTTCAACATAGGTTATGTAGAAGAAGtttttttGCCCGAA-GTATAGATT 1251
| |||||||||||||| |||||||| ||||||||||||||| ||| ||| |||||||||
Sbjct 940 A--CAAAGTGTTTCAACCTAGGTTATATAGAAGAAGTTTTTT-GCC-GAAAGTATAGATT 995
Query 1252 GAGACATGTTTCTGATACTAAATTTTGTTTCGGTTGGGTCAGAATCATATGGAAGGAGAT 1311
|||| ||||||||||| |||||||||||||||||||||||| ||||||||| || |||||
Sbjct 996 GAGAAATGTTTCTGATGCTAAATTTTGTTTCGGTTGGGTCAAAATCATATGAAATGAGAT 1055
Query 1312 GAAATTCGAGTCAGGAGACAGCATTTTAATGCTTGTGTTGTATAATACCAACAGTCTTTA 1371
||| |||||| |||||||||| |||| ||||||||||||| ||| | | ||||| |||||
Sbjct 1056 GAA-TTCGAGCCAGGAGACAGGATTTCAATGCTTGTGTTG-ATA-T-C-AACAGCCTTTA 1110
Query 1372 TTCAATTTTTTCCTAGAATGTTTTATTACCTTGAAGTTTGGT 1413
||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1111 TTCAATTTTTTCCTAGAGTGTTTTATTACCTTGACGTTTGGT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5