BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31240.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922589 jgi|Araly1|922589|scaffold_103870.1 1179 0.0
> Ahg922589 jgi|Araly1|922589|scaffold_103870.1
Length=871
Score = 1179 bits (638), Expect = 0.0
Identities = 799/875 (91%), Gaps = 17/875 (2%)
Strand=Plus/Plus
Query 11 TCAAAATCTCTCCACCACCAATGAAGCGACGACGCCGTAACTCCAAACTTAAATTCGAAG 70
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TCAAAA--TCTCCACCACCAATGAAGCGACGACGCCGTAACTCCAAACTTAAATTCGAAG 60
Query 71 AAACCTCCGACCAATCACCGACATCCACGGCAGAGTTCTCCTTCTCTCTCACCAAAATCG 130
|| ||||||||||||||||| || ||||||| ||||||||||||||||| ||||||||||
Sbjct 61 AATCCTCCGACCAATCACCGGCAACCACGGCGGAGTTCTCCTTCTCTCTTACCAAAATCG 120
Query 131 CCGTCAGCCAAATCTGCCAATCTATTGGATACAAAGCCACCGATGCCTCCGCTCTCAACA 190
||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 121 CCGTCAGTCAAATCTGCCAATCTATTGGATACAAAGCCACAGATTCCTCCGCTCTCAACA 180
Query 191 CTCTAACCCTAACCACCACCAAATTCTTACAATCCCTCGCCGAACTCGCATCGTCGTTCT 250
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CTCTAACCCTAACCACCACCAAATTCTTACAATCCCTCGCCGAACTCGCAGCGTCGTTCT 240
Query 251 CTAACACCGCTAATCGCACGGAGGTTAATCTCTTCGACATCGTCAATGGTCTCCAAGATA 310
|||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||
Sbjct 241 CTAACACCGCTAATCGAACAGAGGTTAACCTCTTCGACATCGTCAACGGTCTCCAAGATA 300
Query 311 TCGCTTTATCTACTTCCGATTGTTTCCCCGGTGGCTCTACGGTTCACGATATTGAATCTC 370
||||||| ||||||||||||||||||||||| || || || || ||||||||||||||||
Sbjct 301 TCGCTTTGTCTACTTCCGATTGTTTCCCCGGCGGATCCACCGTGCACGATATTGAATCTC 360
Query 371 AGTGCCTGATCAAATCCGCTGTTCTCCGTAACCTCTCCGATTTCGTTACCTACGCTCCTG 430
| ||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 361 ATTGCTTGATCAAATCAGCTGTTCTTCGTAACCTCTCCGATTTCGTTGCCTACGCTCCTG 420
Query 431 AGATTCCTTTCGCTAAACCGTTACCGAGACGGGAAAGAGACGGATCGTTCGGAGGAGATT 490
| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 421 AAATTCCTTTTGCTAAGCCGTTACCGAGACGAGAAAGAGACGGATCGTTAGGAGGAGATT 480
Query 491 TGGATCACGTGGCGGTGACTCGATCGGTGGATGTGACGTCAGTTCCAGCTTGGCTTCCGC 550
||||||| | | ||||||||| ||||||||| |||| ||| ||||||||||||||||| |
Sbjct 481 TGGATCAAGCGCCGGTGACTCAATCGGTGGAGGTGAAGTCTGTTCCAGCTTGGCTTCCTC 540
Query 551 CTTTTCCTGACT-CTAGTCTCTGCTCCGATCGTTGT-TCAAAGGATAATAGATCTGATCA 608
|||| || || | |||||||||||||||| || ||| | |||||||| ||||||||||
Sbjct 541 CTTTCCCAGA-TGCTAGTCTCTGCTCCGAACGATGTAT-AAAGGATA---GATCTGATCA 595
Query 609 CTTGTGGGAAAACTCTGATTCCGTTATTCG-CCGTGAAATTTTGCCGGAGAGTTTGAAAT 667
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 596 TTTGTGGGAAAACTCTGATTCCGTTATT-GACCGTGAAATTTTGCCGGAGAGTTTGCAAT 654
Query 668 CTAAAAGCGGAGGAAGATTACCGGTAATGAGAGATAA-AGTGAGATTCAAGATGGAACAA 726
|||||| |||||||||||||||||||| |||||| || |||||||||||||||||| |||
Sbjct 655 CTAAAATCGGAGGAAGATTACCGGTAAGGAGAGA-AAGAGTGAGATTCAAGATGGATCAA 713
Query 727 CGAGATTGGAGT-AGTGGTGGTGATACGAGATTGGAGCGGTCGCGGGACAATAACAATGG 785
|||||||||||| | |||||||||||||||||||||||||| |||||| ||| || | ||
Sbjct 714 CGAGATTGGAGTGA-TGGTGGTGATACGAGATTGGAGCGGTGGCGGGATAATCACGACGG 772
Query 786 CGAATCTGGCCGTG-ATCTTGAGGTTAAGAAGAAAATTAGAGAAGGATACACTTACTGTG 844
|||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 773 CGAATCTGGCGGTGGAG-TTGAGGTTAAGAAGAAAATTAGAGAAGGATACAATTACTGTA 831
Query 845 CCGGCGAGTGGCCGTTTTAGTCTATTCTGATGACG 879
|||||||||||||| |||| | ||||||| |||||
Sbjct 832 CCGGCGAGTGGCCGATTTAATTTATTCTGGTGACG 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5