BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31260.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313960 jgi|Araly1|313960|fgenesh1_pm.C_scaffold_1002740 1668 0.0
> Ahg313960 jgi|Araly1|313960|fgenesh1_pm.C_scaffold_1002740
Length=1095
Score = 1668 bits (903), Expect = 0.0
Identities = 1034/1098 (94%), Gaps = 6/1098 (1%)
Strand=Plus/Plus
Query 1 ATGACTAAATCTCATGTCATTTtctctgcctccatcgctctctttctcctactctccatc 60
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACTAACTCTCATGTCATTTTCTCTGCCTCCATCGCTCTCTTTCTCCTCCTCTCCATC 60
Query 61 tcgcatttcccgggagctctctctcAATCCAAT-AAAGATTGCCAA-TCAAAATCCAACT 118
|||||||||||||||||||||||||||| | | |||| ||| ||| || |||||||||
Sbjct 61 TCGCATTTCCCGGGAGCTCTCTCTCAAT-CTGTCAAAGTTTG-CAAGTCCAAATCCAACA 118
Query 119 ACTCATGTATAGACAAAAACAAAGCATTAGATCTCAAACTCTTATCAATCTTCTCAATTC 178
|| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |
Sbjct 119 ACACATGTATAGACAAAGACAAAGCATTAGATCTCAAACTCATAGCAATCTTCTCAATCC 178
Query 179 TCATCACTAGTCTAATCGGTGTTTGCCTCCCGTTCTTTGCCCGATCAATTCCCGCTTTCC 238
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 179 TCATCACTAGTCTAATCGGTGTTTGCCTCCCGTTCTTCGCCCGATCAGTTCCCGCTTTCC 238
Query 239 AACCCGAGAAATCTCACTTCCTCATCGTAAAATCTTTCGCCTCCGGAATCATCCTTTCCA 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 239 AACCCGAGAAATCTCACTTCCTCATCGTAAAATCTTTTGCCTCCGGAATCATCCTCTCCA 298
Query 299 CTGGTTTCATGCATGTCTTGCCTGATTCTTTCGAGATGCTTTCATCTCCTTGTCTTAACG 358
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 CTGGTTTCATGCATGTCTTGCCTGATTCTTTCGACATGCTTTCATCTCCTTGTCTTAACA 358
Query 359 ATAACCCCTGGCACAAGTTTCCTTTCGCCGGCTTTGTAGCCATGATGTCTGCCGTGTTCA 418
|||||||||||||||||||||||||| | || ||||| |||||||| || ||||||||||
Sbjct 359 ATAACCCCTGGCACAAGTTTCCTTTCACAGGATTTGTTGCCATGATCTCGGCCGTGTTCA 418
Query 419 CGCTCATGGTTGACTCTATTACCACCAGCGTCTTCACCAAGTCAGGAAGGAAAGATCTAC 478
| || |||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 419 CACTAATGGTTGACTCTATTACCACTAGCGTCTTCACCAAGTCAGGCAGGAGAGATCTAA 478
Query 479 GTGCTGACGTAGCATCCGTTGAGACTCCTGACCAAGAGATAGGGCACGTACAGGTTCATG 538
|||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 479 GTGCTGACATAGCATCCGTTGAGACTCCTGACCGAGAGATAGGGCACGTACATGTTCATG 538
Query 539 GCCATGTTCATAGCCATACTCTTCCTCACAATCTTCATGGAGAGAATGATAAAGAGCTTG 598
||||||||||||||||| | |||| ||| |||||||| |||||||||||||| |||||||
Sbjct 539 GCCATGTTCATAGCCATGCCCTTCATCATAATCTTCAAGGAGAGAATGATAAGGAGCTTG 598
Query 599 GTTCTTATTTACAGCTTCTGCGGTATCGTATTCTTGCAATCGTATTGGAGCTAGGAATAG 658
||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 599 GTTCTGATTTACAGCTTCTGCGGTATCGTGTTATTGCAATCGTACTGGAGCTAGGAATAG 658
Query 659 TGGTGCAGTCGATAGTGATAGGACTATCGGTAGGAGACACTAACAATACTTGCACCATCA 718
|||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 659 TGGTCCACTCGATAGTGATAGGACTATCCGTAGGAGCCACTAACAATACTTGCACCATCA 718
Query 719 AAGGACTCGTCGCTGCGCTTTGCTTCCATCAAATGTTCGAAGGCATGGGTCTCGGCGGTT 778
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 719 AAGGTCTCGTCGCTGCGCTTTGTTTCCACCAAATGTTCGAAGGCATGGGTCTCGGCGGTT 778
Query 779 GCATCCTTCAGGCGGAGTACGGGTGGGTTAAAAAGGCGGTGATGGCTTTCTTTTTTGCGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCATCCTTCAGGCGGAGTACGGGTGGGTTAAAAAGGCGGTGATGGCTTTCTTTTTTGCGG 838
Query 839 TGACGACGCCTTTTGGAGTGGTTCTAGGGATGGCACTATCTAAAACATACAAAGAGAATA 898
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 839 TGACGACGCCTTTTGGAGTGGCTCTAGGGATGGCATTATCTAAAACATACAAAGAGAATA 898
Query 899 GCCCTGAATCGCTTATAACAGTTGGGTTGCTCAACGCTTCCTCGGCAGGACTACTCATCT 958
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 GCCCTGATTCGCTTATAACAGTTGGGTTGCTCAACGCTTCCTCGGCTGGACTACTCATCT 958
Query 959 ACATGGCTTTAGTTGACCTTCTAGCTGCCGATTTTATGGGTCAAAAAATGCA-AAGGAGC 1017
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 959 ACATGGCTTTAGTCGACCTTCTAGCTGCCGATTTTATGGGTCAAAAAATGCAGAAG-AGC 1017
Query 1018 ATCAAGCTTCAATTAAAGTCATATGCTGCCGTTTTGCTTGGTGCTGGTGGCATGTCCGTC 1077
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1018 ATCAAGCTTCAATTAAAGTCATATGCCGCCGTATTGCTAGGTGCTGGTGGCATGTCCGTC 1077
Query 1078 ATGGCCAAGTGGGCTTGA 1095
||||||||||||||||||
Sbjct 1078 ATGGCCAAGTGGGCTTGA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5