BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31280.1
Length=3343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473645 jgi|Araly1|473645|fgenesh2_kg.1__3599__AT1G31280.1 4752 0.0
Ahg913356 jgi|Araly1|913356|Al_scaffold_0001_3610 2348 0.0
Ahg935303 jgi|Araly1|935303|scaffold_403291.1 135 2e-30
> Ahg473645 jgi|Araly1|473645|fgenesh2_kg.1__3599__AT1G31280.1
Length=3255
Score = 4752 bits (2573), Expect = 0.0
Identities = 3048/3272 (93%), Gaps = 53/3272 (2%)
Strand=Plus/Plus
Query 67 ATGGAGAGAGGTGGTTATCGAGGAGGTCGTGGTGATGGCCGTGGT-----------A-GA 114
||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 1 ATGGAGAGAGGTGGTTATCGAGGTGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGGAGGA 60
Query 115 GGTGGCCGTGGTTAT------GGC---GGAGGCGGAGGAGGAGGAGAACAAGGTCGTGAT 165
|| |||||||| ||| ||| ||||| ||||||||||||||||||||||||| |
Sbjct 61 GGAGGCCGTGGCTATGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGAACAAGGTCGTGGT 120
Query 166 CGTGGCTA---CGGC---GGCGGAGAACAAGGTCGTGGTCGTGGCTCAGAGCGAGGCGGC 219
|||||||| |||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 121 CGTGGCTATGGCGGCGGAGGCGGAGAACAAGGTCGTGGTCGTGGTTCAGATCGTGGCGGT 180
Query 220 GGAAATCGTGGTCAAGGTCGTGGTGAACAACAGGATTTTCGAAGCCAGAGTCAGCGGGGA 279
||||||||||| || || ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 181 GGAAATCGTGGGCAGGGACGTGGTGAACAACAGGATTTTCGTAGCCAGAGTCAGTGGGGA 240
Query 280 CCTCCGCCAGGTCACGGTGGCCGTGGGACGACGCAGTTC-CAACAGCCTCGACCACAGGT 338
|||||||| ||||||||||| ||||||||| | | | || ||||| ||||||||||||||
Sbjct 241 CCTCCGCCTGGTCACGGTGGTCGTGGGACG-C-C-G-TCGCAACAACCTCGACCACAGGT 296
Query 339 GGCTCCGCAGCCGTCGCAGGCTCCGGCGAGTTATGCCGGTTCAGTAGGAGGAGTCGCTGG 398
|| ||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 297 GGTTCCGCAGCCGTCGCAAGCTCCGGTTAGTTATGCCGGTTCGGTAGGAGGAGTCGCTGG 356
Query 399 TAGAGGCGCGTGGGGTCGTAAGCCACAGGTTCCGTCTGATTCGGCTTCTCCGTCCACCAG 458
|||||||||||||||||||| |||||||||| | |||||||| ||||||||||||| |
Sbjct 357 TAGAGGCGCGTGGGGTCGTAGGCCACAGGTTTCTTCTGATTCAGCTTCTCCGTCCA-C-- 413
Query 459 CACCACCGTGGTTTCTGAACCCGTTCGTGTAGCTGAAGTTATGAATCTGAAGCCATCGGT 518
|||| |||||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 414 CACCGTCGTGGTTTCTGAGCCCGTTCGTGTAGCTGAAGTTATGAATCCGAGGCCATCGGT 473
Query 519 GCAAGTTGCGACTTCTGATAGGAAAGAACCAATGAAGCGACCTGATAGAGGCGGAGTTGT 578
|||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 474 GCAAGTTGTGTCTTCTGATAGGAAAGAACCGATGAAGCGACCTGATAGAGGCGGTGTTGT 533
Query 579 GGCTGTGCGGCGTGTTAATCTATATGTGAATCATTATAAAGTGAATTTCAATCCTGAAAG 638
|||||||||||| |||||||| ||||||||||||| || |||||||||| |||| |||||
Sbjct 534 GGCTGTGCGGCGGGTTAATCTCTATGTGAATCATTTTAGAGTGAATTTCGATCCGGAAAG 593
Query 639 TGTTATAAGACATTATGATGTTGAAATCAAAGGAGAAATTCCTACCAAGAAGGTTTCGAG 698
||| |||||||||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 594 TGTCATAAGACATTATGATGTTGAAATCAAAGGAGAAAATCCTACGAAGAAGATTTCGAG 653
Query 699 GTTTGAGCTAGCTATGGTTAGGGACAAGGTGTTCACTGACAATCCCGATGAGTTTCCCTT 758
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 654 GTTTGAGCTAGCTATGGTTAGGGACAAGGTGTTCACTGATAATCCTGATGAGTTTCCCTT 713
Query 759 AGCTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGTGCGGTTGAGTTACCTACGGG 818
|||||||||||||||||||||||||||||||||||||| || | ||| || ||||||||
Sbjct 714 CGCTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGCCTACGGG 773
Query 819 GTCATACAAGGTGGAGTAT-CCTAAAACTGAAGAGATGAGAGGTCGAAGCTATACGTTCA 877
|||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 774 GTCATATAAGGTGGAGT-TCCCTAAAACTGAAGAGATGAGAGGTCGAAGCTATACATTCA 832
Query 878 CTATCAAACAGGTGAATGTGCTGAAGCTAGGTGACTTGAAAGAGTACATGACAGGGAGAT 937
||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||| |
Sbjct 833 TTATCAAACAGGTGAATGAGCTTAAGCTACGCGACTTGAAAGAGTACATGACAGGGAGTT 892
Query 938 CGTCTTTCAATCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAGCATCCTT 997
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 893 CGTCTTGCAATCCGCGTGATGTGTTGCAAGCAATGGATGTTGTGATGAAGGAGCATCCTT 952
Query 998 CCAAGTGTATGATCACTGTTGGTAAAAGCTTTTTCACTCGTGAAACTGAGCCAGATGAAG 1057
| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct 953 CAAAGTGTATGATCACTGTCGGTAAGAGCTTTTTCACTCGTGAAACTGAGCGAGATGAAG 1012
Query 1058 ATTTTCGTTTCGGGGTTATAGCTGCGAAAGGGTATCGCCACACTCTGAAGCCCACAGCAC 1117
| ||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1013 ACTTTGGCTTCGGGGTTGCAGCTGCTAAAGGGTATCGCCACACTCTGAAGCCCACAGCAC 1072
Query 1118 AAGGTTTGTCTTTGTGTTTGGATTACTCGGTGTTGGCGTTCCGCAAAGCAATGTCGGTCA 1177
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1073 AAGGTTTGTCTTTGTGTTTGGACTACTCAGTGTTGGCGTTCCGCAAAGCAATGTCGGTCA 1132
Query 1178 TTGAATACCTGAAGTTGTACTTTAACTGGTCTGATATGCGTCAGTTTA-G----G-AGGC 1231
||||||||||||||||||||||||||||| | |||||||||||||||| | | ||||
Sbjct 1133 TTGAATACCTGAAGTTGTACTTTAACTGGCCCGATATGCGTCAGTTTAGGAATTGTAGGC 1192
Query 1232 GTGATGTGGAAGAGGAATTGATTGGTTTGAAAGTCACTGTCAATCATCGGAAGAACAAGC 1291
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GTGATGTGGAAAAGGAACTGACTGGTTTGAAAGTCACTGTCAATCATCGGAAGAACAAGC 1252
Query 1292 AGAAACTCACCATTGTAGGGCTGAGTATGCAAAACACAAAAGACATCAAATTTGATCTTA 1351
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1253 AGAAACTCACCATTGTAGGGCTGAGTATGCAAGACACAAAAGACATCAAATTCGATCTTA 1312
Query 1352 TTGATCAAGAGGGAAACGAGCCGCCAAGGAAGACGTCCATTGTTGAGTATTTCAGGATAA 1411
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1313 TTGATCAAGAGGGAAACGAGCCACCAAGGAAAACGTCCATTGTTGAGTATTTCAGGATAA 1372
Query 1412 AGTATGGAAGACACATTGTTCACAAGGATATACCTTGCTTGGATTTGGGAAAAAACGGTA 1471
||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1373 AGTATGGAAGAGACATTGTTCACAAAGATATTCCTTGCTTGGATTTGGGGAAAAACGGTA 1432
Query 1472 GGCAAAATTTTGTGCCCATGGAATTCTGTGACTTGGTTGAGGGACAGATATATCCAAAGG 1531
||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 1433 GGCAAAATTTTGTCCCCATGGAGTTCTGCGACTTGGTTGAGGGACAGATTTATCCAAAGG 1492
Query 1532 ATAACTTGGATAAAGATTCAGCTTTGTGGCTAAAAAAGTTGTCACTGGTCAATCCACAAC 1591
|| |||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1493 ATGACTTGGATAAAGATTCAGCTTTGTGGTTAAAAAAGTTGTCGCTAGTCAATCCACAAC 1552
Query 1592 AAAGGCAGAGGAATATAGATAAGATGATAAAGGCTCGTAATGGACCGAGCGGTGGTGAAA 1651
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1553 AAAGGCAGAGGAATATAGATAAGATGATAAAGTCTCGTAATGGACCGAGCGGTGGAGAAA 1612
Query 1652 TCATTGGAAACTTTGGATTGAAAGTGGATACAAACATGACACCGGTGGAAGGTCGTGTAC 1711
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 TAATTGGAAACTTCGGATTGAAAGTGGATACAAACATGACACCGGTGGAAGGTCGTGTAC 1672
Query 1712 TCAAGGCTCCATCATTGAAGTTGGCAGAGAGAGGGAGAGTTGTGCGTGAGGAACCCAACC 1771
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1673 TCAAGGCTCCAACATTGAAGTTGGCAGAGAGAGGGAGAGCTGTGCGTGAGGAACCCAACC 1732
Query 1772 CGAGACAGAACAACCAATGGAACCTTATGAAGAAGGGAGTCACAAGGGGATCTATAGTCA 1831
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CAAGACAGAACAACCAATGGAACCTTATGAAGAAGGGAGTCACAAGGGGATCTATAGTCA 1792
Query 1832 AGCATTGGGCTGTACTTGACTTCACTGCATCCGAGAGATTTAACAAGATGCCTAATGACT 1891
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1793 AGCATTGGGCTGTACTTGACTTCACCGCATCCGAGAGATTTAACAAGATGCCTAATGACT 1852
Query 1892 TTGTGGATAACCTTATTGATCGTTGTTGGAGACTTGGGATGCAGATGGAGGCTCCTATCG 1951
||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1853 TTGTGGATAACCTCATCGACCGTTGTTGGAGACTTGGGATGCAGATGGAGGCTCCTATAG 1912
Query 1952 TTTACAAAACATCGAGAATGGAAACACTTTCTAATGGTAATGCTATTGAGGAATTGCTTC 2011
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1913 TTTACAAAACATCGAAAATGGAAACACTTTCTAATGGTAATGCTCTTGAGGAATTGCTTC 1972
Query 2012 GATCCGTGATAGATGAAGCTTCTCGTAAGCATGGTGGGGCTCGTCCAACTCTTGTTCTGT 2071
|||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1973 GATCTGTGATAGATGAGGCTTTTCGTAAGCATGGTGGGGCTCGTCCAACTCTTGTTCTGT 2032
Query 2072 GTGCTATGTCTCGGAAAGACGATGGCTATAAGACTCTGAAATGGATAGCCGAGACCAAAC 2131
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2033 GTGCTATGTCTCGGAAGGACGATGGCTACAAGACTCTGAAATGGATAGCCGAGACCAAAC 2092
Query 2132 TTGGTCTGGTGACTCAGTGTTTCTTGACTGGTCCTGCCACTAAAGGAGGTGATCAGTACC 2191
||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 2093 TTGGTCTTGTGACTCAGTGTTTCTTGACCGGTTCTGCCACTAAAGGAGGTGATCAGTACC 2152
Query 2192 GGGCAAATCTTGCCCTCAAGATGAACGCAAAGGTTGGTGGAAGCAATGTCGAGCTT-ATG 2250
||||||||||||||||||||||||| |||||||||||||||||||| || ||| || |||
Sbjct 2153 GGGCAAATCTTGCCCTCAAGATGAATGCAAAGGTTGGTGGAAGCAACGTTGAG-TTGATG 2211
Query 2251 GATACTTTCTCTTTCTTCAAAAAAGAGGATGAGGTCATGTTCATTGGTGCTGATGTCAAT 2310
||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 2212 GATACGTTCTCTTTTTTCCAAAAAGAGGATGAGGTCATGTTCATTGGTGCCGATGTCAAT 2271
Query 2311 CATCCCGCTGCTCGGGACAAGATGAGCCCGTCCATTGTTGCTGTTGTGGGAACTCTTAAC 2370
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 2272 CATCCTGCTGCTCGGGACAAGATGAGCCCGTCTATTGTTGCTGTTGTGGGTACTCTAAAC 2331
Query 2371 TGGCCTGAAGCAAATCGCTATGCAGCTAGAGTCATTGCCCAGCCTCACCGCAAAGAGGAA 2430
||||||| ||| || || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2332 TGGCCTGCAGCTAACCGTTATGCAGCTAGAGTCATTGCCCAGCCTCACCGTAAAGAGGAG 2391
Query 2431 ATACAAGGATTTGGCGACGCTTGTTTGGAGCTTGTCAAAGCTCATGTTCAGGCCACAGGG 2490
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2392 ATACAAGGATTTGGCGATGCTTGCCTGGAGCTTGTCAAAGCTCATGTTCAGGCCACCGGG 2451
Query 2491 AAACGGCCTAACAAGATTGTGATATTCCGTGATGGTGTCAGCGATGCTCAGTTCGATATG 2550
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2452 AAACGACCTAACAAGATTGTGATATTCCGTGATGGTGTCAGCGACGCTCAGTTCGATATG 2511
Query 2551 GTTCTCAATGTGGAGTTGCTTGATGTTAAGCTAACTTTTGAGAAGAATGGTTACAATCCA 2610
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2512 GTTCTCAATGTGGAGTTGCTTGATGTTAAGCTGACTTTTGAGAAGAATGGTTACAATCCA 2571
Query 2611 AAGATAACGGTAATCGTAGCCCAGAAACGTCATCAAACCCGTTTCTTCCCAGCCACAAAT 2670
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2572 AAGATAACGGTAATCGTAGCCCAGAAACGCCATCAAACCCGTTTCTTCCCTGCCACAAGC 2631
Query 2671 AATGATGGAAGTGATAAGGGCAATGTGCCTTCAGGTACGGTTGTTGATACTAAAGTTATT 2730
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2632 AATGATGGAAGTGATAAAGGCAATGTGCCTTCAGGTACGGTCGTTGATACTAAAGTCATT 2691
Query 2731 CACCCGTATGAGTATGATTTCTACCTCTGCAGTCACCACGGAGGGATAGGGACAAGCAAA 2790
|||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct 2692 CACCCGTATGAGTATGATTTCTACATCTGCAGTCACCATGGAGGGATCGGGACAAGCAAA 2751
Query 2791 CCGACTCATTACTACACTCTTTGGGACGAACTTGGATTCACTTCGGATCAGGTGCAGAAG 2850
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2752 CCGACTCATTACTACACCCTTTGGGACGAACTTGGATTCACTTCAGATCAGGTTCAGAAG 2811
Query 2851 CTCATCTTCGAGATGTGCTTCACTTTCACTCGCTGCACCAAACCCGTCTCTCTTGTTCCG 2910
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2812 CTCATCTTTGAGATGTGCTTCACTTTCACTCGCTGCACCAAACCTGTCTCTCTTGTTCCT 2871
Query 2911 CCGGTGTATTATGCTGACATGGTTGCTTTTAGAGGAAGGATGTACCACGAGGCAAGCTCT 2970
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2872 CCGGTGTATTATGCTGACATGGTTGCCTTTAGAGGAAGGATGTACTACGAGGCAAGCTCT 2931
Query 2971 CGTGAGAAGAACTTTAAGCAGCCGCGGGGAGCGTCAACCTCTGCTGCTTCGCTTGCCTCT 3030
|| ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2932 CGAGAGAAGAACTTTAGGCAGCCGCGGGGAGCGTCTACCTCAGCTGCTTCGCTTGCCTCT 2991
Query 3031 TCATTATCTTCTCTTACAATTGAGGACAAAGCGATTTTCAAGCTGCATGCAGAGCTTGAG 3090
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2992 TCATTATCTTCTCTTACAGTTGAGGACAAAGCGATATTCAAGCTGCATGCAGAGCTTGAG 3051
Query 3091 AATGTTATGTTCTTCGTCTGAAGAAGAGAGTGAGTTTCTTTTGTGTTTTGGGTCTCAAGC 3150
|| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 3052 AACGTTATGTTCTTTGTCTGAAGAAGAGAGTAAGTTT-TTTTGTGTTTTGGGTCTCAAGC 3110
Query 3151 TGAACTTAAACCTATATTCGAAATCGGAACGCCCCAATAACGCAGTTTTAACTCCTTTTT 3210
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3111 TGAACTT--A---ATATTCGAAATCGGAACGCCCCAATAACGCAGTTTTAACTCCTTTTT 3165
Query 3211 TCTGGTAGAAAGGAGTTTGTGCGTGAATCTAATTGGGTTTTTCGTAGTGTGTTTCTTTCT 3270
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 3166 TCTGGTAGAAAGGAGTTTGTGCGTGAATCTAATTGGGTTTTTCGCAGTGTGTTTATTTCT 3225
Query 3271 TTTTGGTTTTGGTGTGTTGAAACGAATTTGTA 3302
|||||||| ||||||||||||||||||||||
Sbjct 3226 TTTTGGTT--GGTGTGTTGAAACGAATTTGTA 3255
> Ahg913356 jgi|Araly1|913356|Al_scaffold_0001_3610
Length=3333
Score = 2348 bits (1271), Expect = 0.0
Identities = 2209/2647 (83%), Gaps = 124/2647 (5%)
Strand=Plus/Plus
Query 530 CTTCTGATAGGAAAGAACCAATGAAGCGACCTGATAGAGGCGGAGTTGT-GGC-TGTGCG 587
||||||||| |||||||||||||||||| ||||||||||| | || || || |||||
Sbjct 746 CTTCTGATAAGAAAGAACCAATGAAGCGTCCTGATAGAGG-TG-GTAGTAAGCTTGTGCA 803
Query 588 GCGTGTTAATCTATATGTGAATCATTAT-AAAGTGAATTTCAATCCTGAAAGT----GT- 641
|| || ||||| | ||| ||||||| | || |||| |||| | |||||||| ||
Sbjct 804 ACGCGTAAATCTCTCTGTCAATCATT-TCAATGTGAGTTTCCCTTCTGAAAGTGAAAGTG 862
Query 642 T-ATAAGACATTATGATGTTGAAATCAAAGGAGAAATTCCTACCAAGAAGGTTTCGAGGT 700
| ||||| || || |||||||| ||||||||||||| |||| || ||| | || || |
Sbjct 863 TCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATCCTTTAAAAAAGATATCAAGAT 922
Query 701 TTGAGCTAGCTATGGTTAGGGACAAGGTGTTCACTGACAATCCCGATGAGTTTCCCTTAG 760
||||||||||||||| | || ||||||||||| |||||||||||| |||||||||| |
Sbjct 923 ATGAGCTAGCTATGGTCAAAGAGAAGGTGTTCACCGACAATCCCGATAAGTTTCCCTTCG 982
Query 761 CTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGTGCGGTTGAGTTACCTACGGGGT 820
||||||||||||||||||||||||||||||||||||| || | ||| || |||| || |
Sbjct 983 CTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGTCTACAGGTT 1042
Query 821 CATACAAGGTGGAGTAT-CCTAAAACTGAAGAGATGAGAGGTCGAAGCTATACGTTCACT 879
|||| |||||||||| | ||| ||||||| |||||||||| |||||||||||| |||||
Sbjct 1043 CATATAAGGTGGAGT-TCCCTGAAACTGATGAGATGAGAGCTCGAAGCTATACATTCACC 1101
Query 880 ATCAAACAGGTGAATG-T--GCTGAAGCTAGGTGACTTGAAAGAGTACATGACA-GGG-A 934
|||||||||||||||| | ||| |||||| |||||||| |||| ||||| | | ||| |
Sbjct 1102 ATCAAACAGGTGAATGATGAGCTTAAGCTACGTGACTTGGAAGACTACAT-A-AGGGGAA 1159
Query 935 GATCGTCTTTCAATCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAGCATC 994
| || ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1160 GTTCCTCTTTCATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAACATC 1219
Query 995 CTTCCAAGTGTATGATCACTGTTGGTAAAAGCTTTTTCACTCGTGAAACTGAGCCAGATG 1054
|||| ||| ||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 1220 CTTCAAAGCGTATGATGACTGTTGGTAAAAGCTTTTTCACTC--G----TGAGCCAGATG 1273
Query 1055 AAGATTTTCGTTTCGGGGTTATAGCTGCGAAAGGGTATCGCCACACTCTGAAGCCCACAG 1114
|||| ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1274 AAGACTTTCGCTTCGGGGTTGTAGCTGCGAAAGGGTATCGCCACACTCTAAAGCCCACAG 1333
Query 1115 CACAAGGTTTGTCTTTGTGTTTGGATTACTCGGTGTTGGCGTTCCGCAAAGCAATGTCGG 1174
||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||
Sbjct 1334 CACAAGGTTTGTCTTTGTGTTTGGACTACTCGGTTTTGGCATTCCGCAATGCAATGTCGG 1393
Query 1175 TCATTGAATACCTGAAGTTGTACTTTAACTGGTCTGATATGCGTCAGTTTA-G----G-A 1228
||||||| |||||||||||||||||| |||||| |||||||||||||||| | | |
Sbjct 1394 TCATTGACTACCTGAAGTTGTACTTTGGCTGGTCCGATATGCGTCAGTTTAGGAATTGTA 1453
Query 1229 GGCGTGATGTGGAAGAGGAATTGATTGGTTTGAAAGTCACTGTCAATCATCGGAAGAACA 1288
|||||||||||||| ||||| ||| |||||||||||||||||| || |||||||||||||
Sbjct 1454 GGCGTGATGTGGAAAAGGAACTGACTGGTTTGAAAGTCACTGTTAACCATCGGAAGAACA 1513
Query 1289 AGCAGAAACTCACCATTGTAGGGCTGAGT-ATGCAAAACACAAAAGACATCAAATTTGAT 1347
||||||||||||||||||||||| ||||| | | | ||||||||||| |||| ||| |||
Sbjct 1514 AGCAGAAACTCACCATTGTAGGGTTGAGTGA-GTACAACACAAAAGATATCACATTCGAT 1572
Query 1348 CTTATTGATCAAGAGGGAAACGAGCCGCCAAGG-AAGACGTCCATTGTTGAGTATTTCA- 1405
||||||||||| | |||| ||||||| |||||| ||| ||||||||| |||||||||
Sbjct 1573 CTTATTGATCATGCGGGAGACGAGCCTCCAAGGAAAG-TATCCATTGTTAAGTATTTCAT 1631
Query 1406 GGATAAAGTATGGAAGACACAT-TGTTCACAAGGATATACCTTG-CTTGGATTT-GGGAA 1462
||| ||||||||||| | |||| ||| |||||||||| ||||| || | ||| |||||
Sbjct 1632 GGA-AAAGTATGGAAAAGACATCCGTT-ACAAGGATATTCCTTGCCTAAG-TTTGGGGAA 1688
Query 1463 AAAACGGTAGGCAAAATTTTGTGCCCATGGAATTCTGTGACTTGGTTGAGGGACAGATAT 1522
|||| ||| ||||||||| ||| |||||||| || ||| ||||||| ||||| ||||| |
Sbjct 1689 AAAA-GGTCGGCAAAATTATGTACCCATGGAGTTTTGTAACTTGGTCGAGGGGCAGATTT 1747
Query 1523 ATCCAAAGGATAACTTGGATAAAG--ATTCAGCTTTGTGGCTAAAAAAGTTGTCACTGGT 1580
||||||| || || || || | | ||||||||| || ||||| | ||||| || ||
Sbjct 1748 ATCCAAAAGAAAAATT-GA-AGGGTAATTCAGCTTCCCGGTTAAAACACTTGTCCCTTGT 1805
Query 1581 CAATCCACAACAAAGGCA-GAGGAATATAGATAAGATGATAAAGGC-TCGTAATGGACCG 1638
||||||||||| |||| | || ||||||||| || |||||||| || | | |||||||
Sbjct 1806 CAATCCACAACGAAGGAAGGA-GAATATAGAAAATATGATAAA-GCTTAGGGATGGACCA 1863
Query 1639 AGCGGTGGTGAAATCATTGGAAACTTTGGATTGAAAGTGGATACAAACATGACACCGGTG 1698
|||||||| || |||||||| || |||||| ||||||||| ||||||||||||| |||||
Sbjct 1864 AGCGGTGGAGATATCATTGGGAATTTTGGACTGAAAGTGGCTACAAACATGACAACGGTG 1923
Query 1699 GAAGGTCGTGTACTCAAGGCTCCAT-CATTGAAGTTGGCAGA-GAG-AGGGAGAGT--TG 1753
||||||||||||||||||||||| | || ||| |||| | || || | ||| | | ||
Sbjct 1924 GAAGGTCGTGTACTCAAGGCTCC-TACACTGATGTTGACTGATCAGAAAGGA-AATCCTG 1981
Query 1754 TGC-GTGAGGAACCCAACCCGAGACAGAACAACCAATGGAACCTTATGAA-GAAGGGAGT 1811
| | ||||||| | |||| | ||||||| ||||||||||||| || ||| ||||
Sbjct 1982 T-CACTGAGGAA--C--CCCG-CA-AGAACAATCAATGGAACCTTA-CAATAAAGCGAGT 2033
Query 1812 CACAAGGGGATCTATAGTCAAGCATTGGGCTGTACTTGACTTCACTGCATC--CG-A--- 1865
|||| ||| || | |||||||||||||||||| ||||| ||||| || || | |
Sbjct 2034 TACAAAGGGTTCAAAAGTCAAGCATTGGGCTGTTCTTGATTTCACCGCGTCTAAGAAGCC 2093
Query 1866 G-AGATTTAACAAGATGCCTAATGACTTTGTGGA-TAACCTTATTGATCGTTGTTGGAGA 1923
| | | || ||||||||||| || ||||||| || || || | || ||||||| |||
Sbjct 2094 GCACAATT-ACAAGATGCCTGATAACTTTGTTGAGGAA-CTCACTGCGCGTTGTTCCAGA 2151
Query 1924 CTTGGGATGCA-GATGGAGGCTCCTATCGTTTACAAAACATCGAGAATGGAAACACTTTC 1982
||||||||| | | ||||| |||||||||| |||||||| || ||||| || |||||
Sbjct 2152 CTTGGGATG-ACGTTGGAGAATCCTATCGTTCGCAAAACATTAAGTATGGATACGCTTTC 2210
Query 1983 TAATGGTAATGCTATTGAGGAATTGCTTCGATCCGTGATAGATGAAGCTTCT-CGTAAGC 2041
||||||||||| | ||||||||||||||||||||||||| ||||| |||| | | ||| |
Sbjct 2211 TAATGGTAATGATCTTGAGGAATTGCTTCGATCCGTGATTGATGAGGCTT-TACTTAA-C 2268
Query 2042 ATGGTGGGGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTCGGAAAGACGATGGCTATA 2101
| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
Sbjct 2269 -T-ATCGGGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTGGGAAAGTCGATGGCTACA 2326
Query 2102 AGACTCTGAAATGGATAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTCTTGACTG 2161
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2327 AGACTCTGAAATGGCTAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTCTTGACCG 2386
Query 2162 GTCCTGCCACTAAAGGAGGTGATCAGTACCGGGCAAATCTTGCCCTCAAGATGAACGCAA 2221
|| |||| | || ||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 2387 GTTCTGCGAATAGGGGAGGTGATCAGTACTTGGCAAATCTCGCCCTCAAGATAAACGCAA 2446
Query 2222 AGGTTGGTGGAAGC-AATGTCGAGCTTATGG---A-TACTTTCTCTTTCTTCAAAAAAGA 2276
|||||||||||| | || || ||||| ||| | || ||||||||||||||| ||||
Sbjct 2447 AGGTTGGTGGAA-CGAACGTGGAGCTGGTGGACAATTA-TTTCTCTTTCTTCAATGAAGA 2504
Query 2277 GGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCGGGACAAGATGAG 2336
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2505 AGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCACGACAAGATGAG 2564
Query 2337 CCCGTCCATTGTTGCTGTTGTGGGAACTCTTAACTGGCCTGAAGCAAATCGCTATGCAGC 2396
|| ||||||||||||||||| || |||||||||||||||||||| || ||||| |||||
Sbjct 2565 TCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAGCTAACCGCTACGCAGC 2624
Query 2397 TAGAGTCATTGCCCAGCCTCACCGCAAAGAGGAAATACAAGGATTTGGCGACGCTTGTTT 2456
|||||||| || ||| ||||||| ||||| || |||||||| ||||| || |||| ||
Sbjct 2625 TAGAGTCAAAGCTCAGACTCACCGTAAAGAAGAGATACAAGGGTTTGGTGAAACTTGCTT 2684
Query 2457 GGAGCTTGTCAAAGCTCATGT-TCAGGCCAC-AGGGAAACGGCCTAACAAGATTGTGATA 2514
||||||||||| |||||| | | | ||||| | | ||||| ||||||||||||||||||
Sbjct 2685 AGAGCTTGTCAATGCTCAT-TCTAATGCCACCAAG-AAACGACCTAACAAGATTGTGATA 2742
Query 2515 TTCCGTGATGGTGTCAGCGATGCTCAGTTCGATATGGTTCTCAATGTGGAGTTGCTTGA- 2573
||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||
Sbjct 2743 TTCCGTGATGGTGTCAGTGATGGTCAGTTCGATATGGTTCTCAATGTGGAGTTACA-GAA 2801
Query 2574 TGTTAAGCTA-ACTTTTGAGAAGAATGGTTACAATCCAAAGATAACGGTAATCGTAGCCC 2632
||||||| | |||||| | |||| || || ||||| |||||||||||| || || |
Sbjct 2802 TGTTAAGG-ACACTTTTAAAAAGATTGAATATAATCCGTTGATAACGGTAATTGTGGCAC 2860
Query 2633 AGAAACGTCATCAAACCCGTTTCTTCCCAGCCACAAATAATGATGGAAGTGATAAGGGCA 2692
|||| ||||||||||||||||||||||| ||||||| |||||| ||| || ||
Sbjct 2861 AGAAGCGTCATCAAACCCGTTTCTTCCCTGCCACAAGCAATGAT--AAG-GA------CA 2911
Query 2693 ATGTGCCTTCAGGTACGGTTGTTGATACTAAAGTT-ATTCACCCGTATGAGTATGATTTC 2751
|||||| |||||||||||| |||||||| |||| | |||||||| | |||||||||||||
Sbjct 2912 ATGTGCTTTCAGGTACGGTCGTTGATAC-AAAGATCATTCACCCATTTGAGTATGATTTC 2970
Query 2752 TACCTCTGCAGTCACCACGGAGGGATAGGGACAAGCAAACCGACTCATTACTACACTCTT 2811
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 2971 TATCTCTGCAGTCACCACGGAGGGATTGGGACAAGCAAACCAACTCATTACTATGTTCTG 3030
Query 2812 TGGGACGAACTTGGATTCACTTCGGATCAGGTGCAGAAGCTCATCTTCGA-GATGTGCTT 2870
| |||||| | || |||| ||||||||| | ||||||||||| || || | |||||||
Sbjct 3031 TACGACGAAATCGGGTTCAAGTCGGATCAGATTCAGAAGCTCATATTTGACG-TGTGCTT 3089
Query 2871 CAC-TTTCACTCGCTGCACCAAACCCGTCTCTCTTGTTCCGCCGGTGTATTATGCTGACA 2929
||| ||| ||||||||||||||||| ||| |||| ||||| || || | |||||||||||
Sbjct 3090 CACGTTT-ACTCGCTGCACCAAACCTGTCGCTCTGGTTCCTCCAGTTTCTTATGCTGACA 3148
Query 2930 TGGTTGCTTTTAGAGGAAGGATGTACCACGAGGCAAGCTCTCGTG-AGAAGAACTTTAAG 2988
|| ||||| |||||||||| ||||| |||||||||||| | || ||||||||| ||||
Sbjct 3149 AGGCTGCTTCTAGAGGAAGGTTGTACTACGAGGCAAGCTTTA-TGGAGAAGAACTCTAAG 3207
Query 2989 CAGCCGCGGGGAGCGTCAAC--CT-CTGCTGCTTCGCTTGCCTCTTCATTATCTTCTCTT 3045
||| |||| |||||||| | || ||||||||||| |||||||||||| ||||||||
Sbjct 3208 CAGTCGCGTGGAGCGTCTTCATCTTCTGCTGCTTCGGTTGCCTCTTCATCCTCTTCTCTC 3267
Query 3046 ACAATTGAGGACAAAGCGATTTTCAA-GCTGCATGCAGAGCTTGAGAATGTTATGTTCTT 3104
||| | |||||||||| ||| ||||| | | || ||||| ||||||| |||||||||
Sbjct 3268 ACAGTGGAGGACAAAGAGATCTTCAAAGTT-CACACAGAGATTGAGAACAATATGTTCTT 3326
Query 3105 CGTCTGA 3111
|||||||
Sbjct 3327 CGTCTGA 3333
Score = 84.2 bits (45), Expect = 6e-15
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 67 ATGGAGAGAGGTGGTTATCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGTGGC 120
|||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAGCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGC 54
> Ahg935303 jgi|Araly1|935303|scaffold_403291.1
Length=215
Score = 135 bits (73), Expect = 2e-30
Identities = 87/94 (93%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 325 CCTCGACCACAGGTGGCTCCGCAGCCGTCGCAGGCTCCGGCGAGTTATGCCGGTTCAGTA 384
||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 142 CCTCGACCACATGTGGTTCCGCAGCCGTCGCAAGCTCCGGTTAGTTATGCCGGTTCAGTA 83
Query 385 GGAGGAGTCGCTGGTAGAGGCGCGTGGGGTCGTA 418
||||||||||||||||||||||| || |||||||
Sbjct 82 GGAGGAGTCGCTGGTAGAGGCGCATGAGGTCGTA 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126198912068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5