BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31290.1
Length=3585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913356 jgi|Araly1|913356|Al_scaffold_0001_3610 2819 0.0
Ahg473645 jgi|Araly1|473645|fgenesh2_kg.1__3599__AT1G31280.1 2283 0.0
> Ahg913356 jgi|Araly1|913356|Al_scaffold_0001_3610
Length=3333
Score = 2819 bits (1526), Expect = 0.0
Identities = 2382/2780 (86%), Gaps = 119/2780 (4%)
Strand=Plus/Plus
Query 855 AGGCGCGTGGGCTCGTAAGCCTCAACTTTTCTCTGATTCGACGGTCTTACCTTCTAGTTC 914
||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| |||
Sbjct 624 AGGCGCGTGGGCTCGTAGGCCACAACTTTTCTCTGATTCGGCGGTCTTGCCTTC---TTC 680
Query 915 TTCGTCTAACGTCGTTGCTTCTCACACCGCTAGTGGTTCTCAAGTTATGACTCCGAAACC 974
|||||| | |||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 681 TTCGTCGACCGTCGTGGCTTCTCAAACCGCTAGTGGTTCTCAAGTTATGACTCCGAAGCC 740
Query 975 ATCTTCTTCTGATAAGAAAGAACCAGTAAAGCGTCCTGATAAAGGTGGTAATATA-AAAG 1033
||||||||||||||||||||||||| | ||||||||||||| |||||||| || | |
Sbjct 741 ATCTTCTTCTGATAAGAAAGAACCAATGAAGCGTCCTGATAGAGGTGGTAGTA-AGCTTG 799
Query 1034 TGAAAGGCGTAATTAATCTCTCCGTCAATCATTTTAGA-GTGAGTTT--C-TC---AACA 1086
|| || |||| | |||||||| ||||||||||| | | |||||||| | || ||
Sbjct 800 TGCAACGCGT-A--AATCTCTCTGTCAATCATTTCA-ATGTGAGTTTCCCTTCTGAAAGT 855
Query 1087 GAAAGTGTCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATTCTTCAAAAAAGATA 1146
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 856 GAAAGTGTCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATCCTTTAAAAAAGATA 915
Query 1147 TCAAGATTTGAGCTAGCTATGGTCAAAGAAAAGCTGTTCAAGGACAAT---AATGACTTT 1203
||||||| ||||||||||||||||||||| ||| |||||| |||||| || | |||
Sbjct 916 TCAAGATATGAGCTAGCTATGGTCAAAGAGAAGGTGTTCACCGACAATCCCGATAAGTTT 975
Query 1204 -CCTAACGCCATGACAGCGTACGATGGTCAGAAGAACATTTTCAGCGCTGTTGAATTACC 1262
||| ||| |||||||| || |||||||||||||||||||||||||| | |||||| |
Sbjct 976 CCCT-TCGCTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGTC 1034
Query 1263 TACGGGATCATTTAAAGTTGATTTCTCAGAAACCGAGGAGATCATGAGAGGTAGAAGCTA 1322
||| || |||| ||| || || ||| | ||||| || ||| ||||||| | |||||||
Sbjct 1035 TACAGGTTCATATAAGGTGGAGTTCCCTGAAACTGATGAG---ATGAGAGCTCGAAGCTA 1091
Query 1323 TACGTTCATCATCAAACAAGTGAA--A-GAGCTAAAGTTACTTGACTTGCAAGCCTACAT 1379
||| |||| ||||||||| ||||| | ||||| ||| ||| ||||||| ||| ||||||
Sbjct 1092 TACATTCACCATCAAACAGGTGAATGATGAGCTTAAGCTACGTGACTTGGAAGACTACAT 1151
Query 1380 -AGATGGACGTTCCACTTTTATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGA 1438
|| ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AAG-GGGAAGTTCCTCTTTCATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGA 1210
Query 1439 AGGAACATCCTTCAAAACGTATGATCACTGTTGGTAAAAGATTCTTTAGTACTCG-G--C 1495
|||||||||||||||| |||||||| |||||||||||||| || ||| ||||| | |
Sbjct 1211 AGGAACATCCTTCAAAGCGTATGATGACTGTTGGTAAAAGCTT-TTTC--ACTCGTGAGC 1267
Query 1496 TAGA-GATTGACTTTGGATACGGAGTTGGAGCTGCGAAAGGGTTTCACCACACTCTCAAG 1554
||| || |||||| | | ||| |||| |||||||||||||| || ||||||||| |||
Sbjct 1268 CAGATGAA-GACTTTCGCTTCGGGGTTGTAGCTGCGAAAGGGTATCGCCACACTCTAAAG 1326
Query 1555 CCCACAGTACAAGGTTTATCATTATGTTTGAACTCCTCT-TTGTTGGCGTTCCGCAAAGC 1613
||||||| ||||||||| || || |||||| ||| ||| || ||||| |||||||| ||
Sbjct 1327 CCCACAGCACAAGGTTTGTCTTTGTGTTTGGACTACTCGGTT-TTGGCATTCCGCAATGC 1385
Query 1614 AATTTCAGTCATCGAATACCTGAAGTTGTACTTTGGGTGGAGAAATATACGTCAGTTTAA 1673
||| || ||||| || |||||||||||||||||||| ||| |||| ||||||||||
Sbjct 1386 AATGTCGGTCATTGACTACCTGAAGTTGTACTTTGGCTGGTCCGATATGCGTCAGTTTAG 1445
Query 1674 GAATTGTAGGCCTGATGACGTGGTACAAG-AATTGATTGGTTTGAAAGTCACTGTTGATC 1732
||||||||||| ||||| ||| | ||| || ||| ||||||||||||||||||| | |
Sbjct 1446 GAATTGTAGGCGTGATG---TGGAA-AAGGAACTGACTGGTTTGAAAGTCACTGTTAACC 1501
Query 1733 ATCGAAAGACCAAACAGAAATTCATCATTATGGGGTTGAGTAAGGACGACACAAAAGATA 1792
|||| |||| ||| |||||| ||| |||| | ||||||||| || || ||||||||||||
Sbjct 1502 ATCGGAAGAACAAGCAGAAACTCACCATTGTAGGGTTGAGTGAGTACAACACAAAAGATA 1561
Query 1793 TCAAATTCGATTTTATTGATCATGCTGGAAACCAGCCTCCAAGGAAAATATCCATTGTTG 1852
||| ||||||| ||||||||||||| ||| || |||||||||||||| |||||||||||
Sbjct 1562 TCACATTCGATCTTATTGATCATGCGGGAGACGAGCCTCCAAGGAAAGTATCCATTGTTA 1621
Query 1853 AGTATTTCAAGGAAAAGTATGGAAGAGACATT-GATCACAAGGATATTCCTTGCTTGAA- 1910
||||||||| |||||||||||||| |||||| | | ||||||||||||||||| | ||
Sbjct 1622 AGTATTTCATGGAAAAGTATGGAAAAGACATCCGTT-ACAAGGATATTCCTTGCCT-AAG 1679
Query 1911 TTTGGGGAAAAAGGGTCGGGAAAATTTTGTACCCATGGAGTTCTGTAACTTAGTCGAGGG 1970
|||||||||||| |||||| |||||| ||||||||||||||| |||||||| ||||||||
Sbjct 1680 TTTGGGGAAAAAAGGTCGGCAAAATTATGTACCCATGGAGTTTTGTAACTTGGTCGAGGG 1739
Query 1971 GCAGATTTTTCCAAAAGAGAAATTGTATAGAG-A-TTCAGCCGCGTGGTTAAAGGAGCTT 2028
|||||||| ||||||||| |||||| | || | | |||||| | ||||||| | |||
Sbjct 1740 GCAGATTTATCCAAAAGAAAAATTG-A-AGGGTAATTCAGCTTCCCGGTTAAAACA-CTT 1796
Query 2029 -TCACTAGTCACTCCACAACAAAG-ACTGGAGAATATA-AATAAGATGATAAAGTCT-AG 2084
|| || |||| |||||||| ||| | |||||||||| || || ||||||||| || ||
Sbjct 1797 GTCCCTTGTCAATCCACAACGAAGGAA-GGAGAATATAGAA-AATATGATAAAG-CTTAG 1853
Query 2085 TGATGGACCTAGAGGTGGAGATATCATTGGAAACTTCGGATTGAGAGTGGATCCAAACAT 2144
|||||||| || ||||||||||||||||| || || ||| ||| ||||| | |||||||
Sbjct 1854 GGATGGACCAAGCGGTGGAGATATCATTGGGAATTTTGGACTGAAAGTGGCTACAAACAT 1913
Query 2145 GACAACGGTGGAAGGTCGTGTACTCGAGGCTCCTACACTGAAATTGACTGATCGGAGAGG 2204
||||||||||||||||||||||||| ||||||||||||||| |||||||||| || |||
Sbjct 1914 GACAACGGTGGAAGGTCGTGTACTCAAGGCTCCTACACTGATGTTGACTGATCAGAAAGG 1973
Query 2205 CAATCCTATC-CATGAGAAACTCATGAGCGAGAGCAATCAATGGAACCTTACGACAAAGG 2263
|||||| || | |||| ||| | | | ||| |||||||||||||||||| | ||||
Sbjct 1974 AAATCCTGTCAC-TGAGGAACCCC-G--CAAGAACAATCAATGGAACCTTACAATAAAGC 2029
Query 2264 GAGTCACAAAGGGTTCAATAA-TCAAGCATTGGGCTGTTCTTGACTTCACTGCATCCGAG 2322
|||| ||||||||||||| || |||||||||||||||||||||| ||||| || || ||
Sbjct 2030 GAGTTACAAAGGGTTCAA-AAGTCAAGCATTGGGCTGTTCTTGATTTCACCGCGTCTAAG 2088
Query 2323 A-GTTTGaaaaa--a-aaGATGCCTGGTTACTTTGTAAATAAACTCA-T-CGAACGTTGT 2376
| | | | || | |||||||||| | ||||||| | |||||| | || ||||||
Sbjct 2089 AAGCC-GCACAATTACAAGATGCCTGATAACTTTGTTGAGGAACTCACTGCG--CGTTGT 2145
Query 2377 AAGGGACTTGGGATG-CAGATGGAGGCTCCTATCGTTTGCAAAACATCGAGTATGGAAAC 2435
||||||||||| | | ||||| |||||||||| ||||||||| |||||||| ||
Sbjct 2146 TCCAGACTTGGGATGAC-GTTGGAGAATCCTATCGTTCGCAAAACATTAAGTATGGATAC 2204
Query 2436 ACTTTATGATGGTAATGCTCTTGAGGAATTGCTTCGATCCGTGATAGATGAGGCTTCT-C 2494
|||| | ||||||||| ||||||||||||||||||||||||||| |||||||||| | |
Sbjct 2205 GCTTTCTAATGGTAATGATCTTGAGGAATTGCTTCGATCCGTGATTGATGAGGCTT-TAC 2263
Query 2495 ATAACCATGGTGGGGCTTGTCCAACTCTTGTTCTGTGTGCTATGACTGGGAA-GCACGAT 2553
|||| || | || || |||||||||||||||||||||||||| ||||||| | ||||
Sbjct 2264 TTAACTATCG-GG--CTCGTCCAACTCTTGTTCTGTGTGCTATGTCTGGGAAAGT-CGAT 2319
Query 2554 GGATACAAGACTCTGAAATGGATAGCCGAGACCAAACTTGGTCTAGTGACTCAGTGTTTC 2613
|| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2320 GGCTACAAGACTCTGAAATGGCTAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTC 2379
Query 2614 TTGACCA-TATCTGCCATTAAAGGAGAAACCGTTTCTGATCAGTACTTGGCAAATCTCGC 2672
|||||| | ||||| | || |||| || |||||||||||||||||||||||
Sbjct 2380 TTGACCGGT-TCTGCGAATAGGGGAG-----GT----GATCAGTACTTGGCAAATCTCGC 2429
Query 2673 CCTCAAGATAAACGCAAAGGTTGGTGGAACGAACGTGGAGTTGGTGGATAAT-ATTTTCT 2731
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||
Sbjct 2430 CCTCAAGATAAACGCAAAGGTTGGTGGAACGAACGTGGAGCTGGTGGACAATTATTT-CT 2488
Query 2732 CTTTCTTCAAAAAAGAAGATAAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTG 2791
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2489 CTTTCTTCAATGAAGAAGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTG 2548
Query 2792 CTCACGACAATATGAGTCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAG 2851
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2549 CTCACGACAAGATGAGTCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAG 2608
Query 2852 CTAACCGCTACGCAGCTAGAGTCAAAGCTCAGAGTCACCGTAAAGAAGAGATACAAGGGT 2911
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2609 CTAACCGCTACGCAGCTAGAGTCAAAGCTCAGACTCACCGTAAAGAAGAGATACAAGGGT 2668
Query 2912 TTGGTGAAACTTGCTGGGAGCTTATCGAA-GCTCATTCTCAGGCCCCCGAGAAACGACCT 2970
||||||||||||||| |||||| || || ||||||||| | ||| || |||||||||||
Sbjct 2669 TTGGTGAAACTTGCTTAGAGCTTGTC-AATGCTCATTCTAATGCCACCAAGAAACGACCT 2727
Query 2971 AACAAGATTGTGATATTCCGTGATGGTGTCAGCGATGGTCAGTTCGATATGGTTCTCAAT 3030
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2728 AACAAGATTGTGATATTCCGTGATGGTGTCAGTGATGGTCAGTTCGATATGGTTCTCAAT 2787
Query 3031 GTGGAGTTACAGAATGTTAAGGACGTTTTTGCCAAGGTTGGCTATAATCCGCAGATAACT 3090
|||||||||||||||||||||||| |||| ||| ||| ||||||||| ||||||
Sbjct 2788 GTGGAGTTACAGAATGTTAAGGACACTTTTAAAAAGATTGAATATAATCCGTTGATAACG 2847
Query 3091 GTAATTGTGGCACAGAAACGTCATCAAACCCGTTTCTTCCCCGCCACAACTAGCAAAGAT 3150
||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||
Sbjct 2848 GTAATTGTGGCACAGAAGCGTCATCAAACCCGTTTCTTCCCTGCCACAA---GCAATGAT 2904
Query 3151 GGAAGGGCTAAGGGCAATGTGCCTTCAGGTACGGTCGTTGATACCACGATCATTCACCCG 3210
|||| | |||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 2905 --AAGG---A----CAATGTGCTTTCAGGTACGGTCGTTGATACAAAGATCATTCACCCA 2955
Query 3211 TTTGAGTATGATTTCTACCTCTGTAGTCAACATGGAGCGATAGGTACAAGCAAACCAACT 3270
||||||||||||||||| ||||| ||||| || |||| ||| || |||||||||||||||
Sbjct 2956 TTTGAGTATGATTTCTATCTCTGCAGTCACCACGGAGGGATTGGGACAAGCAAACCAACT 3015
Query 3271 CATTATTATGTTCTTT-CGGACGAAATCGGGTTCAACTCGAATCAGATTCAGAAACTCAT 3329
||||| |||||||| | || |||||||||||||||| ||| ||||||||||||| |||||
Sbjct 3016 CATTACTATGTTCTGTACG-ACGAAATCGGGTTCAAGTCGGATCAGATTCAGAAGCTCAT 3074
Query 3330 CTTTGACTTGTGCTTCACGTTTACTCGCTGCACCAAACCGGTCGCTCTGGTTCCTCCGGT 3389
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 3075 ATTTGACGTGTGCTTCACGTTTACTCGCTGCACCAAACCTGTCGCTCTGGTTCCTCCAGT 3134
Query 3390 TTCTTATGCTGACAAGGCTGCTTCTAGAGGAAGGGTGTACTACGAGGCAAGCTTAATGAA 3449
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 3135 TTCTTATGCTGACAAGGCTGCTTCTAGAGGAAGGTTGTACTACGAGGCAAGCTTTATGGA 3194
Query 3450 GAAGAATTCTAAGCAGTCGCGTGGAGCGTCTTCGTCTTCTGC--CT-CGGTTGCCTCTTC 3506
|||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 3195 GAAGAACTCTAAGCAGTCGCGTGGAGCGTCTTCATCTTCTGCTGCTTCGGTTGCCTCTTC 3254
Query 3507 ATCCTCTTCTGTCACAATGGAGGACAAAGAGATCTTCAAGGTTCACGCAG-GCATCGAGA 3565
|||||||||| ||||| |||||||||||||||||||||| |||||| ||| | || ||||
Sbjct 3255 ATCCTCTTCTCTCACAGTGGAGGACAAAGAGATCTTCAAAGTTCACACAGAG-ATTGAGA 3313
Query 3566 ACTTTATGTTCTTTGTCTGA 3585
|| ||||||||| ||||||
Sbjct 3314 ACAATATGTTCTTCGTCTGA 3333
Score = 294 bits (159), Expect = 3e-78
Identities = 239/276 (87%), Gaps = 11/276 (4%)
Strand=Plus/Plus
Query 236 GTGGTTA-C-A-GCGGTCGTGGTGATGGCCATGGCAGAGGCGGCGGCGGAGATCGTGGTC 292
||||||| | | | |||||||||||||||| ||| |||||||||| |||| |||||||||
Sbjct 11 GTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGATATCGTGGTC 70
Query 293 GTGGTTACAGCGGTCGTGGTCGTGGCTTTGTTCAAGATAGGGATGGTGGTTGGGTAAATC 352
|||||||||||||||||||||||||||| | |||||| || |||||||||| ||||||||
Sbjct 71 GTGGTTACAGCGGTCGTGGTCGTGGCTTCGATCAAGACAGAGATGGTGGTTTGGTAAATC 130
Query 353 CAGGGCAAAGTTCAGGTGGTCATGTTC--G-TGGTCGTGGGACGCAGTTGCAACAACCTC 409
|||||| ||||| |||||||| |||| | ||||||||||||||| |||||||||||||
Sbjct 131 GAGGGCAGAGTTCCGGTGGTCAGGTTCACGGTGGTCGTGGGACGCAATTGCAACAACCTC 190
Query 410 CGCCACAGGAAGTTCCTCCGTCGTCGTCGCAAGCTCAAGTGAGTCAAGGCGTTGCA-CCA 468
|||||||| ||| ||| |||||| ||||| | |||||||| ||||||||||| | ||
Sbjct 191 GGCCACAGGCGGTTTCTCAGTCGTCTTCGCAGGTTCAAGTGACTCAAGGCGTTGTAGCC- 249
Query 469 GGAGACGTGGGTCA-AGGCGGCGTCGGAGAC-GTGG 502
|||| ||||||| | |||||||||||||||| ||||
Sbjct 250 GGAGGCGTGGGT-AGAGGCGGCGTCGGAGACCGTGG 284
Score = 180 bits (97), Expect = 7e-44
Identities = 147/171 (86%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 684 CGGAGACGTGGGTAGAGGCGGCGTCGGAGACCGTGGACAGAGTCAGTCGGGACTATC-GT 742
||||| |||||||||||||||||||||||||||||| |||||||||| ||||| || |
Sbjct 249 CGGAGGCGTGGGTAGAGGCGGCGTCGGAGACCGTGGTCAGAGTCAGTGGGGACC-TCCGC 307
Query 743 CGGGTCACTTTGGTCGTGGGACGCAGTTGCAACAACCTC-AGCCACAGGCGGTTTCTCAG 801
| |||||| |||||||||||||| || ||||||||||| | ||||| |||||| ||| |
Sbjct 308 CTGGTCACGGTGGTCGTGGGACGCCGTCGCAACAACCTCGA-CCACAAGCGGTTCCTCCG 366
Query 802 TCGTCTTCGCAGGGTCAAGTGAGTCAATCCTTTGCAACAGGAGGCGTGGGT 852
||| | ||||||| | |||||||||| |||||||||| ||||||||||||
Sbjct 367 TCGACGTCGCAGGCACGAGTGAGTCAAGCCTTTGCAACCGGAGGCGTGGGT 417
Score = 145 bits (78), Expect = 3e-33
Identities = 86/90 (96%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1 ATGGATCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGCAGAGGCGGCGGCGGA 60
||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1 ATGGAGCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGA 60
Query 61 GATCGTGGTCGTGGTTACAGCGGTCGTGGT 90
|||||||||||||||||||||||||||||
Sbjct 61 TATCGTGGTCGTGGTTACAGCGGTCGTGGT 90
Score = 134 bits (72), Expect = 6e-30
Identities = 107/124 (86%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 741 GTC-GGGTCACTTTGGTCGTGGGACGCAGTTGCAACAACCTCAGCCACAGGCGGTTTCTC 799
||| || |||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 149 GTCAGGTTCACGGTGGTCGTGGGACGCAATTGCAACAACCTCGGCCACAGGCGGTTTCTC 208
Query 800 AGTCGTCTTCGCAGGGTCAAGTGAGTCAATCCTTTGCAACAGGAGGCGTGGGTTTAGGCG 859
||||||||||||||| |||||||| |||| | ||| | | |||||||||||| |||||
Sbjct 209 AGTCGTCTTCGCAGGTTCAAGTGACTCAAGGCGTTGTAGCCGGAGGCGTGGGTAGAGGCG 268
Query 860 -CGT 862
|||
Sbjct 269 GCGT 272
Score = 106 bits (57), Expect = 1e-21
Identities = 73/80 (91%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 179 GTGGTTA-C-A-GCGGTCGTGGTGATGGCCGTGGCAGAGGCGGCGGCGGAGATCGTGGTC 235
||||||| | | | |||||||||||||||||||| |||||||||| |||| |||||||||
Sbjct 11 GTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGATATCGTGGTC 70
Query 236 GTGGTTACAGCGGTCGTGGT 255
||||||||||||||||||||
Sbjct 71 GTGGTTACAGCGGTCGTGGT 90
Score = 100 bits (54), Expect = 6e-20
Identities = 72/80 (90%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 122 GTGGTTA-C-A-GCGGTCGTGGTGATGGCCATGGCAGAGGCGGCGGCGGAGATCGTGGTC 178
||||||| | | | |||||||||||||||| ||| |||||||||| |||| |||||||||
Sbjct 11 GTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGATATCGTGGTC 70
Query 179 GTGGTTACAGCGGTCGTGGT 198
||||||||||||||||||||
Sbjct 71 GTGGTTACAGCGGTCGTGGT 90
> Ahg473645 jgi|Araly1|473645|fgenesh2_kg.1__3599__AT1G31280.1
Length=3255
Score = 2283 bits (1236), Expect = 0.0
Identities = 2200/2654 (83%), Gaps = 112/2654 (4%)
Strand=Plus/Plus
Query 979 TCTTCTGATAAGAAAGAACCAG-TAAAGCGTCCTGATAAAGGTGGTAATATAAAAGTGAA 1037
|||||||||| ||||||||| | | ||||| ||||||| ||| ||| | | |||
Sbjct 484 TCTTCTGATAGGAAAGAACC-GATGAAGCGACCTGATAGAGGCGGTGTTGTGGCTGTG-- 540
Query 1038 AGGCGTAATTAATCTCTCCGTCAATCATTTTAGAGTGAGTTTCTCA-ACAGAAAGTGTCA 1096
|||| ||||||||| || |||||||||||||||| |||| | | ||||||||||
Sbjct 541 CGGCG-GGTTAATCTCTATGTGAATCATTTTAGAGTGAATTTC-GATCCGGAAAGTGTCA 598
Query 1097 TAAGGCACTACGATGTTGATATCAAAGGAGAAAATTCTTCAAAAAAGATATCAAGATTTG 1156
|||| || || |||||||| ||||||||||||||| || | || ||||| || || ||||
Sbjct 599 TAAGACATTATGATGTTGAAATCAAAGGAGAAAATCCTACGAAGAAGATTTCGAGGTTTG 658
Query 1157 AGCTAGCTATGGTCAAAGAAAAGCTGTTCAAGGACAA---TAATGACTTT-CCTAACGCC 1212
||||||||||||| | || ||| |||||| || || | |||| ||| ||| |||
Sbjct 659 AGCTAGCTATGGTTAGGGACAAGGTGTTCACTGATAATCCTGATGAGTTTCCCT-TCGCT 717
Query 1213 ATGACAGCGTACGATGGTCAGAAGAACATTTTCAGCGCTGTTGAATTACCTACGGGATCA 1272
|||||||| || |||||||||||||||||||||||||| | |||||| |||||||| |||
Sbjct 718 ATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGCCTACGGGGTCA 777
Query 1273 TTTAAAGTTGATTTCTC-AGAAACCGAGGAGATCATGAGAGGTAGAAGCTATACGTTCAT 1331
| ||| || || ||| | | |||| || ||| ||||||||| |||||||||| |||||
Sbjct 778 TATAAGGTGGAGTTCCCTA-AAACTGA--AGA-GATGAGAGGTCGAAGCTATACATTCAT 833
Query 1332 CATCAAACAAGTGAAAGAGCTAAAGTTACTTGACTTGCAAGCCTACAT-AGATGGACGTT 1390
|||||||| ||||| ||||| ||| ||| |||||| ||| ||||| | | ||| |||
Sbjct 834 TATCAAACAGGTGAATGAGCTTAAGCTACGCGACTTGAAAGAGTACATGACAGGGA-GTT 892
Query 1391 CCACTTTTATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAACATCCTT 1450
| ||| | |||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 893 CGTCTTGCAATCCGCGTGATGTGTTGCAAGCAATGGATGTTGTGATGAAGGAGCATCCTT 952
Query 1451 CAAAACGTATGATCACTGTTGGTAAAAGATTCTTTAGTACTCG-G---CT-A--GAGAT- 1502
|||| ||||||||||||| ||||| || || ||| ||||| | || | |||||
Sbjct 953 CAAAGTGTATGATCACTGTCGGTAAGAGCTT-TTT--CACTCGTGAAACTGAGCGAGATG 1009
Query 1503 -TGACTTTGGATACGGAGTTGGAGCTGCGAAAGGGTTTCACCACACTCTCAAGCCCACAG 1561
|||||||| | ||| |||| |||||| ||||||| || ||||||||| ||||||||||
Sbjct 1010 AAGACTTTGGCTTCGGGGTTGCAGCTGCTAAAGGGTATCGCCACACTCTGAAGCCCACAG 1069
Query 1562 TACAAGGTTTATCATTATGTTTGAACTCCTCTTTGTTGGCGTTCCGCAAAGCAATTTCAG 1621
||||||||| || || |||||| ||| ||| |||||||||||||||||||||| || |
Sbjct 1070 CACAAGGTTTGTCTTTGTGTTTGGACTACTCAGTGTTGGCGTTCCGCAAAGCAATGTCGG 1129
Query 1622 TCATCGAATACCTGAAGTTGTACTTTGGGTGGAGAAATATACGTCAGTTTAAGAATTGTA 1681
|||| ||||||||||||||||||||| ||| |||| |||||||||| ||||||||
Sbjct 1130 TCATTGAATACCTGAAGTTGTACTTTAACTGGCCCGATATGCGTCAGTTTAGGAATTGTA 1189
Query 1682 GGCCTGATGACGTGGTACAA-GAATTGATTGGTTTGAAAGTCACTGTTGATCATCGAAAG 1740
|| | | ||| |||| | || ||| ||| |||||||||||||||||| ||||||| |||
Sbjct 1190 GG-C-G-TGATGTGG-AAAAGGAACTGACTGGTTTGAAAGTCACTGTCAATCATCGGAAG 1245
Query 1741 ACCAAACAGAAATTCATCATTATGGGGTTGAGTAAGGACGACACAAAAGATATCAAATTC 1800
| ||| |||||| ||| |||| | ||| |||||| | | ||||||||||| |||||||||
Sbjct 1246 AACAAGCAGAAACTCACCATTGTAGGGCTGAGTATGCAAGACACAAAAGACATCAAATTC 1305
Query 1801 GATTTTATTGATCATGCTGGAAACCAGCCTCCAAGGAAAATATCCATTGTTGAGTATTTC 1860
||| |||||||||| | |||||| |||| |||||||||| ||||||||||||||||||
Sbjct 1306 GATCTTATTGATCAAGAGGGAAACGAGCCACCAAGGAAAACGTCCATTGTTGAGTATTTC 1365
Query 1861 AAGGA-AAAGTATGGAAGAGACATTGATCACAAGGATATTCCTTGCTTGAATTTGGGGAA 1919
|||| |||||||||||||||||||| |||||| ||||||||||||||| ||||||||||
Sbjct 1366 -AGGATAAAGTATGGAAGAGACATTGTTCACAAAGATATTCCTTGCTTGGATTTGGGGAA 1424
Query 1920 AAAGGGTCGGGAAAATTTTGTACCCATGGAGTTCTGTAACTTAGTCGAGGGGCAGATTTT 1979
||| ||| || |||||||||| |||||||||||||| |||| || ||||| |||||||
Sbjct 1425 AAACGGTAGGCAAAATTTTGTCCCCATGGAGTTCTGCGACTTGGTTGAGGGACAGATTTA 1484
Query 1980 TCCAAAAGA-GAAATTGTATAGAGATTCAGCCGCGTGGTTAAAGGAGCTT-TCACTAGTC 2037
|||||| || | | ||| ||| ||||||||| ||||||||| || || || ||||||
Sbjct 1485 TCCAAAGGATG-ACTTGGATAAAGATTCAGCTTTGTGGTTAAAAAAG-TTGTCGCTAGTC 1542
Query 2038 ACTCCACAACAAAGACTGGA-GAATATAAATAAGATGATAAAGTCTAGTGATGGACCTAG 2096
| |||||||||||| | || ||||||| ||||||||||||||||| || ||||||| ||
Sbjct 1543 AATCCACAACAAAGGC-AGAGGAATATAGATAAGATGATAAAGTCTCGTAATGGACCGAG 1601
Query 2097 AGGTGGAGATATCATTGGAAACTTCGGATTGAGAGTGGATCCAAACATGACAACGGTGGA 2156
|||||||| || ||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1602 CGGTGGAGAAATAATTGGAAACTTCGGATTGAAAGTGGATACAAACATGACACCGGTGGA 1661
Query 2157 AGGTCGTGTACTCGAGGCTCCTACACTGAAATTGACTGATCGGAGAGGCA-ATCCTATCC 2215
||||||||||||| ||||||| ||| |||| ||| | || |||||| | | || | |
Sbjct 1662 AGGTCGTGTACTCAAGGCTCCAACATTGAAGTTGGCAGA---GAGAGGGAGA-GCTGTGC 1717
Query 2216 ATGA-G-A---AACTCATGAGCGAGAGCAATCAATGGAACCTTACGACA-AAGGGAGTCA 2269
||| | | ||| || || | ||| ||| ||||||||||||| || | ||||||||||
Sbjct 1718 GTGAGGAACCCAACCCAAGA-C-AGAACAACCAATGGAACCTTATGA-AGAAGGGAGTCA 1774
Query 2270 CAAAGGGTTCAATAATCAAGCATTGGGCTGTTCTTGACTTCACTGCATCCGAGAG-TTTG 2328
||| ||| || ||| |||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1775 CAAGGGGATCTATAGTCAAGCATTGGGCTGTACTTGACTTCACCGCATCCGAGAGATTT- 1833
Query 2329 aaaaaaaaGATGCCTGGTTACTTTGTAAATAAACTCATCGAACGTTGTAAGG-GACTTGG 2387
|| ||||||||| | ||||||| |||| |||||||| |||||| || |||||||
Sbjct 1834 ---AACAAGATGCCTAATGACTTTGTGGATAACCTCATCGACCGTTGT-TGGAGACTTGG 1889
Query 2388 GATGCAGATGGAGGCTCCTATCGTTTGCAAAACATCGAGTATGGAAACACTTTATGATGG 2447
||||||||||||||||||||| |||| ||||||||||| ||||||||||||| | ||||
Sbjct 1890 GATGCAGATGGAGGCTCCTATAGTTTACAAAACATCGAAAATGGAAACACTTTCTAATGG 1949
Query 2448 TAATGCTCTTGAGGAATTGCTTCGATCCGTGATAGATGAGGCTTCTCATAACCATGGTGG 2507
||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||
Sbjct 1950 TAATGCTCTTGAGGAATTGCTTCGATCTGTGATAGATGAGGCTTTTCGTAAGCATGGTGG 2009
Query 2508 GGCTTGTCCAACTCTTGTTCTGTGTGCTATGACTGGGAAGCACGATGGATACAAGACTCT 2567
|||| |||||||||||||||||||||||||| || ||||| ||||||| |||||||||||
Sbjct 2010 GGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTCGGAAGGACGATGGCTACAAGACTCT 2069
Query 2568 GAAATGGATAGCCGAGACCAAACTTGGTCTAGTGACTCAGTGTTTCTTGACC-ATATCTG 2626
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 2070 GAAATGGATAGCCGAGACCAAACTTGGTCTTGTGACTCAGTGTTTCTTGACCGGT-TCTG 2128
Query 2627 CCATTAAAGGAGAAACCGTTTCTGATCAGTACTTGGCAAATCTCGCCCTCAAGATAAACG 2686
||| |||||||| | |||||||||| ||||||||| ||||||||||| || |
Sbjct 2129 CCACTAAAGGAG-----G----TGATCAGTACCGGGCAAATCTTGCCCTCAAGATGAATG 2179
Query 2687 CAAAGGTTGGTGGAACG-AACGTGGAGTTGGTGGATAATATTTTCTCTTTCTTCAAAAAA 2745
||||||||||||||| | ||||| |||||| ||| ||| |||||||| ||| |||||
Sbjct 2180 CAAAGGTTGGTGGAA-GCAACGTTGAGTTGATGG---ATACGTTCTCTTTTTTCCAAAAA 2235
Query 2746 GAAGATAAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCACGACAATATG 2805
|| ||| ||||||||||||||||||| |||||||||||||| ||||||| ||||| |||
Sbjct 2236 GAGGATGAGGTCATGTTCATTGGTGCCGATGTCAATCATCCTGCTGCTCGGGACAAGATG 2295
Query 2806 AGTCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAGCTAACCGCTACGCA 2865
|| || || |||||||||||||| || ||||| |||||||||| ||||||||| || |||
Sbjct 2296 AGCCCGTCTATTGTTGCTGTTGTGGGTACTCTAAACTGGCCTGCAGCTAACCGTTATGCA 2355
Query 2866 GCTAGAGTCAAAGCTCAGAGTCACCGTAAAGAAGAGATACAAGGGTTTGGTGAAACTTG- 2924
|||||||||| || ||| |||||||||||| ||||||||||| ||||| || ||||
Sbjct 2356 GCTAGAGTCATTGCCCAGCCTCACCGTAAAGAGGAGATACAAGGATTTGGCGATGCTTGC 2415
Query 2925 CTGGGAGCTTATCGAAGCTCAT-TCTCAGGCCCCCGAGAAACGACCTAACAAGATTGTGA 2983
|| ||||||| || |||||||| | ||||||| ||| |||||||||||||||||||||||
Sbjct 2416 CT-GGAGCTTGTCAAAGCTCATGT-TCAGGCCACCGGGAAACGACCTAACAAGATTGTGA 2473
Query 2984 TATTCCGTGATGGTGTCAGCGATGGTCAGTTCGATATGGTTCTCAATGTGGAGTTACA-G 3042
|||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |
Sbjct 2474 TATTCCGTGATGGTGTCAGCGACGCTCAGTTCGATATGGTTCTCAATGTGGAGTTGCTTG 2533
Query 3043 AATGTTAAG--GACGTTTTTGCCAAGGTTGGCTATAATCCGCAGATAACTGTAATTGTGG 3100
| ||||||| ||| |||| | ||| ||| || ||||| ||||||| ||||| || |
Sbjct 2534 A-TGTTAAGCTGAC-TTTT-GAGAAGAATGGTTACAATCCAAAGATAACGGTAATCGTAG 2590
Query 3101 CACAGAAACGTCATCAAACCCGTTTCTTCCCCGCCACAACTAGCAAAGATGGAAGGGCTA 3160
| |||||||| |||||||||||||||||||| ||||||| |||| |||||||| | ||
Sbjct 2591 CCCAGAAACGCCATCAAACCCGTTTCTTCCCTGCCACAA---GCAATGATGGAAGTGATA 2647
Query 3161 AGGGCAATGTGCCTTCAGGTACGGTCGTTGATACCAC-GATCATTCACCCGTTTGAGTAT 3219
| |||||||||||||||||||||||||||||||| | | |||||||||||| |||||||
Sbjct 2648 AAGGCAATGTGCCTTCAGGTACGGTCGTTGATACTAAAG-TCATTCACCCGTATGAGTAT 2706
Query 3220 GATTTCTACCTCTGTAGTCAACATGGAGCGATAGGTACAAGCAAACCAACTCATTATTAT 3279
||||||||| |||| ||||| ||||||| ||| || ||||||||||| |||||||| ||
Sbjct 2707 GATTTCTACATCTGCAGTCACCATGGAGGGATCGGGACAAGCAAACCGACTCATTACTAC 2766
Query 3280 GTTCTTTCGGACGAAATCGGGTTCAACT-C-GAATCAGATTCAGAAACTCATCTTTGACT 3337
|||| ||||||| | || |||| || | || |||| ||||||| |||||||||||
Sbjct 2767 ACCCTTTGGGACGAACTTGGATTCA-CTTCAGA-TCAGGTTCAGAAGCTCATCTTTGAGA 2824
Query 3338 TGTGCTTCACGTTT-ACTCGCTGCACCAAACCGGTCGCTCTGGTTCCTCCGGTTTCTTAT 3396
|||||||||| ||| ||||||||||||||||| ||| |||| ||||||||||| | ||||
Sbjct 2825 TGTGCTTCAC-TTTCACTCGCTGCACCAAACCTGTCTCTCTTGTTCCTCCGGTGTATTAT 2883
Query 3397 GCTGACAAGGCTGC-TTCTAGAGGAAGGGTGTACTACGAGGCAAGCT-TA-ATGAAGAAG 3453
||||||| || ||| || |||||||||| |||||||||||||||||| | | || ||||
Sbjct 2884 GCTGACATGGTTGCCTT-TAGAGGAAGGATGTACTACGAGGCAAGCTCTCGA-GA-GAAG 2940
Query 3454 AA-TTCTAAGCAGTCGCGTGGAGCGTCTTCGTCTTCTGCCTCGGTTGCCTCTTCATCCTC 3512
|| || || |||| |||| ||||||||| | || |||| ||| |||||||||||| ||
Sbjct 2941 AACTT-TAGGCAGCCGCGGGGAGCGTCTACCTCAGCTGCTTCGCTTGCCTCTTCATTATC 2999
Query 3513 TTCTGTCACAATGGAGGACAAAGAGATCTTCAAGGTTCACGCAG-GCATCGAGAACTTTA 3571
|||| | ||| | |||||||||| ||| |||||| | || |||| || | |||||| |||
Sbjct 3000 TTCTCTTACAGTTGAGGACAAAGCGATATTCAAGCTGCATGCAGAGCTT-GAGAACGTTA 3058
Query 3572 TGTTCTTTGTCTGA 3585
||||||||||||||
Sbjct 3059 TGTTCTTTGTCTGA 3072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135408844734
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5