BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31300.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473644 jgi|Araly1|473644|fgenesh2_kg.1__3598__AT1G31300.2 1772 0.0
> Ahg473644 jgi|Araly1|473644|fgenesh2_kg.1__3598__AT1G31300.2
Length=1535
Score = 1772 bits (959), Expect = 0.0
Identities = 1173/1270 (92%), Gaps = 39/1270 (3%)
Strand=Plus/Plus
Query 145 AGGTGGTAGAATGATGAAATGAGAATCGATAGATAAGAGTTTAAAGAGCACCAGAATCTT 204
|||||||||||||||||||||||||||||| || |||||| |||||||| || |||||
Sbjct 300 AGGTGGTAGAATGATGAAATGAGAATCGATTTAT-AGAGTTGAAAGAGCAGCAAAATCTG 358
Query 205 TGTTATCT-TGCAATGTCGACGACGTCTTTGCAAACGATTGGTGCTATTAAGTCTTATCA 263
| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TATTATATCTGCAATGTCGACGACGTCTTTGCAAACGATTGGTGCTATTAAGTCTTATCA 418
Query 264 TCATCAAGCTCAGCATTTGGTTAAGAATTATCTCTTAGCTGATCCTTTTATTCCTTACAC 323
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 419 TCATCAAGCTCAGCATTTGGTTAAGAACTATCTCTTAGCTGATCCTTTTATTCCTTATAC 478
Query 324 TTCTGTCCTCACCGGCATTTTCCTTTGCAAAGTGGTTTATGATCTTTGTCATTTTATCAG 383
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 TTCTGTCCTCACCGGCATTTTCCTTTGCAAAGTGGTTTATGATCTTTGTCACTTTATCAG 538
Query 384 CAACTCACATTCTAAGACTTATATCATCCTCACGAAAATTCAAAGAATCGAATGGAATAA 443
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 CAACTCACATTCTAAGACTTATATCATCCTCACTAAAATTCAAAGAATCGAATGGAATAA 598
Query 444 CCGTGGTATCTCGACAGTTCATGCTATTTTTATTTCGGCTATGTCGCTGTACTTTGTGTT 503
|||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct 599 CCGTGGTATCTCAACAGTTCATGCTATTTTTATCTCGGCTTTGTCCCTGTACTTTGTCTT 658
Query 504 CTGGTCCGACCTCTTTTCCGATAGGTGGCATAATGATCTTGTTGTTTTCCGGAGCTCACG 563
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTGGTCCGATCTCTTTTCCGATAGGTGGCATAATGATCTTGTTGTTTTCCGGAGCTCACG 718
Query 564 ACTTTCTTCTCTTGGTTTAGGGATATCTATTGGTTACTTCCTTGCTGATCTTGGGATGAT 623
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 GCTTTCTTCTCTTGGTTTAGGGATATCTATTGGTTACTTCCTTGCCGATCTTGGGATGAT 778
Query 624 CTTCTGGAAATATCCTTCTTTGGGTGGAATTGAGTATATTGTGCATCACTCGCTATCGGG 683
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 CTTCTGGAAATATCCTTCTTTGGGTGGAATTGAGTATATTGTGCATCACTCGTTATCGGG 838
Query 684 GGTTGCAGTTGCCTACTCTTTATTTTCCGGGGAAGGACAGTTATATACCTACATGGTCCT 743
|| |||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 839 AGTAGCAGTTGCATACTCTTTGTTTTCTGGGGAAGGACAGTTGTATACCTACATGGTCCT 898
Query 744 CATCTCCGAGATTACAACCCCAGAGATCAACTTGAGATGGTACCTGGACACGGCTGGTAT 803
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 899 CATCTCAGAGATTACAACCCCGGAGATCAACTTGAGATGGTACCTGGACACAGCTGGTAT 958
Query 804 GAAAAAATCATTGGCATACGTTGTTAATGGCGTTTTCATCTTCTTGGCTTGGCTGGTTGC 863
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GAAGAAGTCATTGGCATATGTTGTTAATGGCGTTTTCATCTTCTTGGCTTGGCTGGTTGC 1018
Query 864 TAGAATTCTACTGTTCATATACATGTTTTATCATGTTTATCTCCACTACAACCAGGTCAT 923
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 TAGAATTCTACTGTTCATATACATGTTTTATCATGTTTATCTCCACTACAATCAGGTCAT 1078
Query 924 GAGGATGCACATCTTTGGTTACGTTCTGGTATTCGGCGTACCAGCTGCGCTCGGTGTCAT 983
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1079 GAGGATGCACATCTTCGGTTACGTTCTGGTATTCGGCGTACCAGCTGCTCTCGGTGTCAT 1138
Query 984 GAACTTGATATGGTTCGGGAAGATTGTGAGAGGGGTAAAGAAAACATTAGCAAAGAGATG 1043
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GAACTTGATATGGTTTGGCAAGATTGTGAGAGGGGTAAAGAAAACATTAGCAAAGAGATG 1198
Query 1044 TGAATGTTGAGATTGGTGAGTCTTCCTCACACCGTTTCTTCACTTCATCATCTCCTTACT 1103
|||||||||||||||||||||||||||||| | || ||||| | | | ||| |
Sbjct 1199 TGAATGTTGAGATTGGTGAGTCTTCCTCAC-C--TT-CTTCA-T-C--C--CTC-T---- 1243
Query 1104 TCTTCGTCCCTCTGACATATGCCTGTCTCTCTAGTGTAAGTAGTTTTTGTCTGATGAAGa 1163
| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1244 -----G--------ACATATGTATGTCTCTCTAGTGTAAGTAGTTTTTGTCTGATGGAGA 1290
Query 1164 aagaaaaacgaaaa-aa-caaaaaTGAT-AATGATACGATCCTCTGACTCTGTAAATGAT 1220
||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1291 AAGAAAAACAAAAAGAAGCAAAAATGATTAATGATACGATCCTCTGACTCTGTAAATGAT 1350
Query 1221 CAAAA-TTCAAGTCTCTTCTTTACGTTTTCTCATTATACAATGTAATTCTGTTTTCATTC 1279
||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 1351 CAAAAATTCAAGTCTCTT-T--ACGTTTTCTCATTATACAATGTAATTCTGTTTGCATTC 1407
Query 1280 TAATAGTTTTGGTTCTAGGGTTTTGATTCAATTTCTGCTACATTTCGTTTAACCGGAGTT 1339
| |||| ||||| |||||||| || ||| |||||||||||||||| |||| ||||||| |
Sbjct 1408 TTATAGCTTTGGCTCTAGGGTATTAATTTAATTTCTGCTACATTTGGTTTTACCGGAGAT 1467
Query 1340 CGATACAGTACTACCAAAATGATGAACAACTGTTTGGTGTTCAAGTTCTATGGAAGAGAA 1399
|| |||||||||||| |||||||||| | || ||| ||||||||||||||| ||||| ||
Sbjct 1468 CGGTACAGTACTACCCAAATGATGAA-A-CTATTTTGTGTTCAAGTTCTATAGAAGAAAA 1525
Query 1400 AACATTTGGT 1409
||||||||||
Sbjct 1526 AACATTTGGT 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5