BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31310.1 Length=1480 Score E Sequences producing significant alignments: (Bits) Value Ahg313994 jgi|Araly1|313994|fgenesh1_pm.C_scaffold_1002774 1059 0.0 > Ahg313994 jgi|Araly1|313994|fgenesh1_pm.C_scaffold_1002774 Length=1239 Score = 1059 bits (573), Expect = 0.0 Identities = 727/793 (92%), Gaps = 44/793 (6%) Strand=Plus/Plus Query 117 ATGGCTGACCAAAGTGGTGGGTTGGTTATGATGAGAGAGTACAGAAAAGGCAACTGGACG 176 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1 ATGGCTGACCAAAGTGGTGGGTTGGTTATGATGAGAGAGTACAGAAAAGGTAATTGGACT 60 Query 177 TTGAATGAGACGATGGTTCTCATTGAGGCCAAGAGGATGGATGATGAGAGGAGGATGCGG 236 ||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| Sbjct 61 TTGAATGAGACGATGGTGCTCATTGAGGCCAAGAAGATGGATGATGAGAGGCGGATGCGG 120 Query 237 CGGTCCATCGGCCTT-CCACCGCCGGAGCAGCAACAAGATATCC------------G--G 281 ||||||||||| ||| ||||| ||||| ||||||||||||| || | | Sbjct 121 CGGTCCATCGG-CTTACCACCACCGGACCAGCAACAAGATAGCCGGAGTAATAGTAGTAG 179 Query 282 -AGTAATAAACCGGCGGAGCTACGGTGGAAGTGGATAGAAGATTACTGTTGGAGAAAAGG 340 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TAGTAATAAACCGGCGGAGCTACGGTGGAAGTGGATAGAAGATTACTGTTGGAGAAAAGG 239 Query 341 TTGTATGAGAAGTCAGAATCAGTGCAATGACAAATGGGACAATCTCATGAGAGACTACAA 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTGTATGAGAAGTCAGAATCAGTGCAATGACAAATGGGACAATCTCATGAGAGACTACAA 299 Query 401 AAAAGTTAGAGAGTACGAGAGACGAAGGGTAGAATCGTCTATTACCGCCGGTGAGTCGTC 460 ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 300 AAAGGTTAGAGAGTACGAGAGACGAAGGGTAGAATCGTCTTTTACCGCCGCTGAGTCGTC 359 Query 461 TTCATCTTCAGCTCCAGCTGGAGAAACGGCGTCGTACTGGAAGATGGAGAAGAGTGAGAG 520 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 TTCATCTTCAGCTCCAGCTGGAGAAACGGCGTCGTATTGGAAGATGGAGAAGAGTGAGAG 419 Query 521 GAAAGAGAGAAGCTTACCAAGTAATATGTTACCTCAAACATACCAAGCTTTGTTTGAAGT 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GAAAGAGAGAAGCTTACCAAGTAATATGTTACCTCAAACATACCAAGCTTTGTTTGAAGT 479 Query 581 TGTTGAGAGTAAAACGCTTCCTTCTTCTACCGCCGTAACCGCTGTAACCGCTGCAGTTGC 640 ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| Sbjct 480 GGTTGAGAGTAAAACGCTGCCTTCTTCCACCGCCGCAACCGCTGTAACCGCTGCAGTTGC 539 Query 641 GGCTGCTGCTGCTGCTATTAGTAGTGGAAACGGTTCAGGCGGTGGACAAATCCAAAAAGT 700 ||||||| | | | | ||||||||||||||||||||||||||||||||||||||| Sbjct 540 GGCTGCTA-T--T---A--A-TAGTGGAAACGGTTCAGGCGGTGGACAAATCCAAAAAGT 590 Query 701 GATACAACAAGGTTTAGGATTTGTTGTTCCTAAAGTACATCAAATCATTCAGCAGCAACC 760 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || Sbjct 591 GATACAACAAGGTTTAGGATTTGTTGTCCCTAAAGTACATCAAATCATTCAGCA--A-CC 647 Query 761 TGTTTTGTTACCACTTCAGCCACCGCCGCCACCACCACC------GTCTCAGCCGT---- 810 |||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 648 TGTTTTATTACCACTTCAGCCACCACCGCCACCACCACCACCACCGTCTCAGCCGTCACA 707 Query 811 ----T-ACCACGACCACTACTACTGCCACCGCCTCCACCGCCTTCTTTTCATGCTCAGCC 865 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 708 GCCGTTACCACGACCACTACTGCTGCCACCGCCTCCACCGCCTTCTTTTCATGCTCAGCC 767 Query 866 AATACTGCCCACA 878 ||||||||||||| Sbjct 768 AATACTGCCCACA 780 Score = 603 bits (326), Expect = 2e-171 Identities = 386/413 (93%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 884 TAGTAG--CA-CAGATTCTGATACAAGTGAGTATTCAGACACATCTCCGGCGAAGAGAAG 940 |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 831 TAGTAGCTCATCAGATTCTGATACGAGTGAGTATTCAGACACATCTCCGGCGAAGAGAAG 890 Query 941 GAGAACAATGCCGACAACCACAACCGCCGGTCCCAGCGGCGGCGGT-G--TAGATGTGGA 997 ||||||||||||| ||||||||||| |||||||||||||||||| | |||| | ||| Sbjct 891 GAGAACAATGCCG---ACCACAACCGCTGGTCCCAGCGGCGGCGGTGGCCTAGAAGCGGA 947 Query 998 GGAGGTTGGACGTAGTAAGAGAGATGAAGAGACGACAGTAGCGGCTGCGTTATCAAGGAG 1057 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 948 GGAGGTTGGACGTAGTAAGAGAGATGAAGAGACGACAGTAGCGGCTGCGTTATCAAGAAG 1007 Query 1058 TGTGTCAGTGATCGCAAACGCGATTAGGGAGAGTGAGGAGAGACAAGATCGGAGACATAA 1117 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1008 TGTGTCAGTGATCGCAAATGCGATTAGGGAGAGTGAGGAGAGGCAAGATCGGAGACATAA 1067 Query 1118 AGAAGTGATGAACGTACAAGAGAGGAGACTCAAGATCGAAGAATCTAATGTTGAGATGAA 1177 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 AGAAGTGATGAATGTACAAGAGAGGAGACTCAAGATCGAAGAATCTAATGTTGAGATGAA 1127 Query 1178 TAGAGAAGGCATGAATGGATTAGTGGAAGCCATTAATAAGCTAGCTAGCTCCATTTTCGC 1237 |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | Sbjct 1128 TAGAGAAGGCATGAATGGATTAGTGGAAGCCATTAACAAGCTAGCGAGCTCTATTTTCAC 1187 Query 1238 TCTGGCTTCTTCTTCTCGCCATAATAATTAGCATCAAGGAGGTCCAGTACCAT 1290 | ||||||||||| | ||||||||||| ||||||||||||||||| |||||| Sbjct 1188 TTTGGCTTCTTCT-C--GCCATAATAATCAGCATCAAGGAGGTCCATTACCAT 1237 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55383216230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5