BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31310.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313994 jgi|Araly1|313994|fgenesh1_pm.C_scaffold_1002774 1059 0.0
> Ahg313994 jgi|Araly1|313994|fgenesh1_pm.C_scaffold_1002774
Length=1239
Score = 1059 bits (573), Expect = 0.0
Identities = 727/793 (92%), Gaps = 44/793 (6%)
Strand=Plus/Plus
Query 117 ATGGCTGACCAAAGTGGTGGGTTGGTTATGATGAGAGAGTACAGAAAAGGCAACTGGACG 176
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1 ATGGCTGACCAAAGTGGTGGGTTGGTTATGATGAGAGAGTACAGAAAAGGTAATTGGACT 60
Query 177 TTGAATGAGACGATGGTTCTCATTGAGGCCAAGAGGATGGATGATGAGAGGAGGATGCGG 236
||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 61 TTGAATGAGACGATGGTGCTCATTGAGGCCAAGAAGATGGATGATGAGAGGCGGATGCGG 120
Query 237 CGGTCCATCGGCCTT-CCACCGCCGGAGCAGCAACAAGATATCC------------G--G 281
||||||||||| ||| ||||| ||||| ||||||||||||| || | |
Sbjct 121 CGGTCCATCGG-CTTACCACCACCGGACCAGCAACAAGATAGCCGGAGTAATAGTAGTAG 179
Query 282 -AGTAATAAACCGGCGGAGCTACGGTGGAAGTGGATAGAAGATTACTGTTGGAGAAAAGG 340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TAGTAATAAACCGGCGGAGCTACGGTGGAAGTGGATAGAAGATTACTGTTGGAGAAAAGG 239
Query 341 TTGTATGAGAAGTCAGAATCAGTGCAATGACAAATGGGACAATCTCATGAGAGACTACAA 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGTATGAGAAGTCAGAATCAGTGCAATGACAAATGGGACAATCTCATGAGAGACTACAA 299
Query 401 AAAAGTTAGAGAGTACGAGAGACGAAGGGTAGAATCGTCTATTACCGCCGGTGAGTCGTC 460
||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 300 AAAGGTTAGAGAGTACGAGAGACGAAGGGTAGAATCGTCTTTTACCGCCGCTGAGTCGTC 359
Query 461 TTCATCTTCAGCTCCAGCTGGAGAAACGGCGTCGTACTGGAAGATGGAGAAGAGTGAGAG 520
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 TTCATCTTCAGCTCCAGCTGGAGAAACGGCGTCGTATTGGAAGATGGAGAAGAGTGAGAG 419
Query 521 GAAAGAGAGAAGCTTACCAAGTAATATGTTACCTCAAACATACCAAGCTTTGTTTGAAGT 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAAGAGAGAAGCTTACCAAGTAATATGTTACCTCAAACATACCAAGCTTTGTTTGAAGT 479
Query 581 TGTTGAGAGTAAAACGCTTCCTTCTTCTACCGCCGTAACCGCTGTAACCGCTGCAGTTGC 640
||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct 480 GGTTGAGAGTAAAACGCTGCCTTCTTCCACCGCCGCAACCGCTGTAACCGCTGCAGTTGC 539
Query 641 GGCTGCTGCTGCTGCTATTAGTAGTGGAAACGGTTCAGGCGGTGGACAAATCCAAAAAGT 700
||||||| | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGCTGCTA-T--T---A--A-TAGTGGAAACGGTTCAGGCGGTGGACAAATCCAAAAAGT 590
Query 701 GATACAACAAGGTTTAGGATTTGTTGTTCCTAAAGTACATCAAATCATTCAGCAGCAACC 760
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 591 GATACAACAAGGTTTAGGATTTGTTGTCCCTAAAGTACATCAAATCATTCAGCA--A-CC 647
Query 761 TGTTTTGTTACCACTTCAGCCACCGCCGCCACCACCACC------GTCTCAGCCGT---- 810
|||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 648 TGTTTTATTACCACTTCAGCCACCACCGCCACCACCACCACCACCGTCTCAGCCGTCACA 707
Query 811 ----T-ACCACGACCACTACTACTGCCACCGCCTCCACCGCCTTCTTTTCATGCTCAGCC 865
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 708 GCCGTTACCACGACCACTACTGCTGCCACCGCCTCCACCGCCTTCTTTTCATGCTCAGCC 767
Query 866 AATACTGCCCACA 878
|||||||||||||
Sbjct 768 AATACTGCCCACA 780
Score = 603 bits (326), Expect = 2e-171
Identities = 386/413 (93%), Gaps = 12/413 (3%)
Strand=Plus/Plus
Query 884 TAGTAG--CA-CAGATTCTGATACAAGTGAGTATTCAGACACATCTCCGGCGAAGAGAAG 940
|||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 831 TAGTAGCTCATCAGATTCTGATACGAGTGAGTATTCAGACACATCTCCGGCGAAGAGAAG 890
Query 941 GAGAACAATGCCGACAACCACAACCGCCGGTCCCAGCGGCGGCGGT-G--TAGATGTGGA 997
||||||||||||| ||||||||||| |||||||||||||||||| | |||| | |||
Sbjct 891 GAGAACAATGCCG---ACCACAACCGCTGGTCCCAGCGGCGGCGGTGGCCTAGAAGCGGA 947
Query 998 GGAGGTTGGACGTAGTAAGAGAGATGAAGAGACGACAGTAGCGGCTGCGTTATCAAGGAG 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 948 GGAGGTTGGACGTAGTAAGAGAGATGAAGAGACGACAGTAGCGGCTGCGTTATCAAGAAG 1007
Query 1058 TGTGTCAGTGATCGCAAACGCGATTAGGGAGAGTGAGGAGAGACAAGATCGGAGACATAA 1117
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1008 TGTGTCAGTGATCGCAAATGCGATTAGGGAGAGTGAGGAGAGGCAAGATCGGAGACATAA 1067
Query 1118 AGAAGTGATGAACGTACAAGAGAGGAGACTCAAGATCGAAGAATCTAATGTTGAGATGAA 1177
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 AGAAGTGATGAATGTACAAGAGAGGAGACTCAAGATCGAAGAATCTAATGTTGAGATGAA 1127
Query 1178 TAGAGAAGGCATGAATGGATTAGTGGAAGCCATTAATAAGCTAGCTAGCTCCATTTTCGC 1237
|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |
Sbjct 1128 TAGAGAAGGCATGAATGGATTAGTGGAAGCCATTAACAAGCTAGCGAGCTCTATTTTCAC 1187
Query 1238 TCTGGCTTCTTCTTCTCGCCATAATAATTAGCATCAAGGAGGTCCAGTACCAT 1290
| ||||||||||| | ||||||||||| ||||||||||||||||| ||||||
Sbjct 1188 TTTGGCTTCTTCT-C--GCCATAATAATCAGCATCAAGGAGGTCCATTACCAT 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5