BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31320.1 Length=959 Score E Sequences producing significant alignments: (Bits) Value Ahg313993 jgi|Araly1|313993|fgenesh1_pm.C_scaffold_1002773 843 0.0 > Ahg313993 jgi|Araly1|313993|fgenesh1_pm.C_scaffold_1002773 Length=519 Score = 843 bits (456), Expect = 0.0 Identities = 499/520 (96%), Gaps = 2/520 (0%) Strand=Plus/Plus Query 91 ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTG 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTG 60 Query 151 CGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATTTTCCGGCCGATGAGCCTCAG 210 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 CGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATTTTCCGGCGGATGAGCCTCAG 120 Query 211 AAATTTGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAA 270 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAATTCGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAG 180 Query 271 TTACCAATCCACCAGCGAGGGGACGCTGTGAGCAGCATGGTTTACGAGGCTAATGCAAGA 330 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 181 TTACCAATCCACCAGCGAGGGGACGCGGTGAGCAGCATGGTTTACGAGGCTAACGCAAGA 240 Query 331 GTGCGGGATCCGGTTTACGGTTGCGTTGGGGCAATTTCGTCCCTCCAGCAACAGATAGAT 390 || ||||||||||||||||||||||| || |||||||||||||||||||||| || || Sbjct 241 GTTCGGGATCCGGTTTACGGTTGCGTAGGTTCAATTTCGTCCCTCCAGCAACAAATCGAC 300 Query 391 GTGTTGCAAGCTCAGCTAGCTCTAGCTCAAGCTGAGGTGGTGCATCTACGTGTACGCCAG 450 ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 301 GTGTTGCAAGCTCAGCTAGCTTTAGCTCAAGCTGAGGTGGTGCACCTACGTGTACGCCAC 360 Query 451 TCGACTAATTTCCCAGGGC-ACGGACTATGCCCGGATAGTCCGAGTAGCAGCGGGTCACC 509 || |||||||| || |||| |||||||||||||||| ||||||||||||||||| ||||| Sbjct 361 TCTACTAATTTTCC-GGGCCACGGACTATGCCCGGACAGTCCGAGTAGCAGCGGTTCACC 419 Query 510 GTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATATGGACATTGT 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATATGGACATTGT 479 Query 570 GGATGAAGCCAGTTTGGGAGAGTCTATGTGGTCTTGCTAG 609 |||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGATGAAGCCAGTTTGGGAGAGTCTATGTGGTCTTGCTAG 519 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35606804478 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5