BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G31320.1

Length=959
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg313993 jgi|Araly1|313993|fgenesh1_pm.C_scaffold_1002773           843    0.0  


> Ahg313993 jgi|Araly1|313993|fgenesh1_pm.C_scaffold_1002773
Length=519

 Score =  843 bits (456),  Expect = 0.0
 Identities = 499/520 (96%), Gaps = 2/520 (0%)
 Strand=Plus/Plus

Query  91   ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTG  150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTG  60

Query  151  CGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATTTTCCGGCCGATGAGCCTCAG  210
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61   CGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATTTTCCGGCGGATGAGCCTCAG  120

Query  211  AAATTTGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAA  270
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  AAATTCGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAG  180

Query  271  TTACCAATCCACCAGCGAGGGGACGCTGTGAGCAGCATGGTTTACGAGGCTAATGCAAGA  330
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  181  TTACCAATCCACCAGCGAGGGGACGCGGTGAGCAGCATGGTTTACGAGGCTAACGCAAGA  240

Query  331  GTGCGGGATCCGGTTTACGGTTGCGTTGGGGCAATTTCGTCCCTCCAGCAACAGATAGAT  390
            || ||||||||||||||||||||||| ||  |||||||||||||||||||||| || || 
Sbjct  241  GTTCGGGATCCGGTTTACGGTTGCGTAGGTTCAATTTCGTCCCTCCAGCAACAAATCGAC  300

Query  391  GTGTTGCAAGCTCAGCTAGCTCTAGCTCAAGCTGAGGTGGTGCATCTACGTGTACGCCAG  450
            ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| 
Sbjct  301  GTGTTGCAAGCTCAGCTAGCTTTAGCTCAAGCTGAGGTGGTGCACCTACGTGTACGCCAC  360

Query  451  TCGACTAATTTCCCAGGGC-ACGGACTATGCCCGGATAGTCCGAGTAGCAGCGGGTCACC  509
            || |||||||| || |||| |||||||||||||||| ||||||||||||||||| |||||
Sbjct  361  TCTACTAATTTTCC-GGGCCACGGACTATGCCCGGACAGTCCGAGTAGCAGCGGTTCACC  419

Query  510  GTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATATGGACATTGT  569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  GTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATATGGACATTGT  479

Query  570  GGATGAAGCCAGTTTGGGAGAGTCTATGTGGTCTTGCTAG  609
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  480  GGATGAAGCCAGTTTGGGAGAGTCTATGTGGTCTTGCTAG  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35606804478


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5