BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31330.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473640 jgi|Araly1|473640|fgenesh2_kg.1__3594__AT1G31330.1 1362 0.0
> Ahg473640 jgi|Araly1|473640|fgenesh2_kg.1__3594__AT1G31330.1
Length=919
Score = 1362 bits (737), Expect = 0.0
Identities = 887/953 (93%), Gaps = 36/953 (4%)
Strand=Plus/Plus
Query 1 AAGAATCTAAAGCTCCTCCCATAAGTCTTCTCTCCACACTTCACCCAAA-ACTCCAGAAC 59
||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 1 AAGAATCTAAAGCTCCTCCCATAAGTCCTCTCTCCACACTTCACCCAAAGA-TCCAGAAC 59
Query 60 CCTAGAATTCGAAATCTCCAAAGAACCCGACAAAGCGCCATGTCGCTCACTATCCCGGCG 119
|||||||||||||| |||| |||||||||| ||||||| ||||||||||| |||||| ||
Sbjct 60 CCTAGAATTCGAAACCTCC-AAGAACCCGA-AAAGCGCGATGTCGCTCACAATCCCGACG 117
Query 120 AATCTCGTTCTCAACCCGAGATCTAACAAATCTCTCACTCAATCCGTACCTAAATCCTCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AATCTCGTTCTCAACCCGAGATCTAACAAATCTCTCACTCAATCCGTACCTAAATCCTCC 177
Query 180 GCAAGATTCGTCTGCTCCGATGACAAATCCTCCTCCTCCACACCTCAATCCATGAAAGCT 239
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 178 GCAAGATTCGTCTGCTCCGATGACAAA---TCCTCCTCCACACCGCAATCCATGAAAGCT 234
Query 240 TTCTCCGCCGCCGTCGCCCTCTCTTCCATCCTCCTCTCTGCTCCTATGCCAGCTGTCGCT 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 235 TTCTCCGCCGCCGTCGCCCTCTCTTCCATCCTCCTCTCTGCTCCGATGCCAGCTGTCGCT 294
Query 300 GATATCTCAGGTTTGACTCCTTGCAAGGACTCAAAACAGTTCGCTAAAAGAGAGAAGCAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GATATCTCAGGTTTGACTCCTTGCAAGGACTCAAAACAGTTCGCTAAAAGAGAGAAGCAA 354
Query 360 CAGATCAAGAAGCTTGAATCTTCTCTTAAGCTCTACGCTCCTGAATCTGCCCCTGCTCTT 419
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 355 CAGATCAAGAAGCTTGAATCATCTCTTAAGCTTTACGCTCCTGAATCTGCTCCTGCTCTT 414
Query 420 GCTCTCAATGCTCAGATCGAGAAAACCAAACGCAGGTTCGACAACTACGGGAAGTACGGA 479
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 GCTCTTAATGCTCAGATCGAGAAAACCAAACGCAGGTTTGACAACTACGGGAAGTACGGA 474
Query 480 TTGTTATGCGGGTCAGACGGTTTACCGCACTTGATAGTGAACGGAGACCAGCGGCATTGG 539
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 475 TTGTTATGCGGGTCAGACGGTTTACCGCACTTGATTGTGAATGGAGACCAGCGGCATTGG 534
Query 540 GGAGAGTTCATTACTCCAGGGATTCTTTTCCTCTACATTGCTGGATGGATCGGGTGGGTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GGAGAGTTCATTACTCCAGGGATTCTTTTCCTCTACATTGCTGGATGGATCGGGTGGGTT 594
Query 600 GGAAGAAGCTACTTAATAGCTATTAGTGGTGAGAAGAAACCCGCGATGAAAGAGATCATC 659
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 595 GGAAGAAGCTATTTAATAGCTATTAGTGGTGATAAGAAACCCGCGATGAAAGAGATCATC 654
Query 660 ATCGATGTTCCTTTGGCTAGTCGGATCATCTTCCGTGGTTTCATTTGGCCCGTTGCTGCC 719
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 655 ATCGATGTTCCTTTGGCTAGTCGGATAATCTTCCGTGGTTTCATTTGGCCCGTTGCTGCC 714
Query 720 TACAGAGAGTTTCTCAATGGTGATCTCATTGCTAAGGATGTTTAAAAAGGGAACTTGTTT 779
|||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 715 TACAGAGAGTTTGTCAATGGTGATCTCATTGCTAAGGATGTTTAAAAA------T-GTTA 767
Query 780 TCTGCTTTTGTGTTACTCTCTCTAATCTCTTTGTTTTCCATTGTACTTATTGAAAAACAA 839
| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 768 --------------A-TCTCTCTAATCTCTATGTTTTCCATTGTACCTATTGAAAAACAA 812
Query 840 TGCATTGTCGAAAACCTTATAAAATTTGGATTGCGCAAGTA-GAAAGAATTATGGCTAAA 898
||||||||||||||| || ||||||||||||||||||| | |||||||| |||||||||
Sbjct 813 TGCATTGTCGAAAACTTT-TAAAATTTGGATTGCGCAATTTCGAAAGAATCATGGCTAAA 871
Query 899 ATGGTGATTGACAGATTGTGATTTTGCGGTCTAGTGATTGCTATGTGAAGCTC 951
| |||||||| ||| |||||||||| ||||||||||| ||||||||||
Sbjct 872 AAGGTGATTGT--GATC---ATTTTGCGGTGTAGTGATTGCTCTGTGAAGCTC 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5