BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G31335.1

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473639 jgi|Araly1|473639|fgenesh2_kg.1__3593__AT1G31335.1         586    5e-167


> Ahg473639 jgi|Araly1|473639|fgenesh2_kg.1__3593__AT1G31335.1
Length=454

 Score =  586 bits (317),  Expect = 5e-167
 Identities = 419/465 (90%), Gaps = 19/465 (4%)
 Strand=Plus/Plus

Query  15   AAAAATCAATCAGAAAGAAGATTG-AACATAGATCTCAAGAGTCAAGATCGATGGGTTTG  73
            ||||| |||||||||||||||||| ||| ||||  ||     ||||||||||||||||||
Sbjct  1    AAAAAACAATCAGAAAGAAGATTGAAAC-TAGA--TC-----TCAAGATCGATGGGTTTG  52

Query  74   GTTGTGGTCATATCTCTGCCTCTAATTTTCTTCTGTCTACTTCTCGGATTTGGCTGCTAC  133
            |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct  53   GTTGTGGTCATATCTCTGCCTCTAATTTTCTTCTGTCTACTTCTTGGATTCGGTTGCTAC  112

Query  134  TTCCTCGGAAAATCTCGCGGCCGTCGTGAGATCCGTACAAATCCTCAGGTGTATGGAGCT  193
            ||||| || |||||||| ||||| | ||| ||||||||||||||||||||||||||||||
Sbjct  113  TTCCTTGGCAAATCTCGTGGCCGCCATGAAATCCGTACAAATCCTCAGGTGTATGGAGCT  172

Query  194  CCAGCTCCGCCTCCCGGTGCTATCGCCGCCTCCTCTCCGCCGTTGTCTCCACACG-CCAA  252
            || |||||||||||||| || ||||||||||| ||||| ||||||||||| || | ||||
Sbjct  173  CCTGCTCCGCCTCCCGGCGCAATCGCCGCCTCTTCTCCACCGTTGTCTCCTCA-GACCAA  231

Query  253  GCCCGACAATTCTCACAACGTCTGATTTTCCTTCATTTTCTCTTCTTTGTCTGTCTTGCT  312
            ||||||||||||||||||||||||||||||||| ||||| ||| || ||||| ||||| |
Sbjct  232  GCCCGACAATTCTCACAACGTCTGATTTTCCTT-ATTTTTTCT-CTCTGTCTATCTTGTT  289

Query  313  TGTCTCTATTGGAAGATGCTTTTGTTTGACTTATTGTGAA-T-T-GT--T-GTAACTTGT  366
            |||||||||||||||||||||||||||||||||||||||| | | ||  | |||||||||
Sbjct  290  TGTCTCTATTGGAAGATGCTTTTGTTTGACTTATTGTGAAATGTTGTACTTGTAACTTGT  349

Query  367  AATCTTTTGATTGTCTTTAGTTTTCTTGGGATGAATTTCCTTCTTTATTTGTGTATTTTC  426
            |||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct  350  AATCTTTTGATTGTCTCTAGTTTTCTTGGGATAAATTCCCTTCTTCATTTGTGTATTTTC  409

Query  427  CTATCTCTTTGATGTAAATAAGAAAGCTAGTAATGGTTTACACAT  471
             | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct  410  TTTTCTCTTTAATGTAAATAAGAAAGCTAGTAATGGTTTACACAT  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17398948584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5