BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31340.1
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473638 jgi|Araly1|473638|fgenesh2_kg.1__3592__AT1G31340.1 972 0.0
Ahg482524 jgi|Araly1|482524|fgenesh2_kg.4__1584__AT2G35635.1 556 6e-158
> Ahg473638 jgi|Araly1|473638|fgenesh2_kg.1__3592__AT1G31340.1
Length=641
Score = 972 bits (526), Expect = 0.0
Identities = 604/641 (94%), Gaps = 8/641 (1%)
Strand=Plus/Plus
Query 33 aaaaaaaaaaTGCAGATCTTCGTCAAAACCCTCACCGGAAAAACCATAACCCTAGAGGTC 92
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAAATGCAGATCTTCGTCAAAACCCTGACCGGAAAAACCATAACCCTAGAGGTC 60
Query 93 GAAAGCAGCGACACCATCGACAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAATACCA 152
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GAAAGCAGCGACACCATCGACAATGTCAAAGCCAAAATCCAGGACAAAGAGGGAATACCA 120
Query 153 CCTGATCAACAGAGGTTGATATTTGCTGGTAAGCAGCTTGAAGATGGTAGAACATTAGCG 212
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 121 CCTGATCAACAGAGGTTGATATTTGCTGGTAAGCAACTTGAAGATGGTCGAACATTAGCG 180
Query 213 GATTACAACATTCAGAAAGAATCGACTCTTCACTTGGTATTGAGGCTTAGGGGTGGGACT 272
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GATTACAACATCCAGAAAGAGTCGACTCTTCACTTGGTCTTGAGGCTTAGGGGTGGGACT 240
Query 273 ATGATTAAGGTGAAGACTCTCACAGGGAAGGAAATTGAGATTGATATCGAACCAACCGAT 332
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 241 ATGATTAAGGTCAAGACTCTCACTGGGAAGGAAATTGAGATTGATATCGAACCAAACGAT 300
Query 333 ACTATTGATCGGATTAAGGAACGTGTTGAGGAGAAAGAAGGTATCCCTCCTGTTCAACAA 392
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTATTGATCGGATCAAGGAACGTGTTGAGGAGAAAGAAGGTATCCCTCCTGTTCAACAA 360
Query 393 AGGCTAATCTACGCCGGAAAACAGCTAGCTGATGACAAAACGGCAAAGGACTACAACATA 452
||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 361 AGGCTCATCTACGCAGGAAAACAGCTAGCTGATGACAAAACGGCAAAAGACTACGCCATA 420
Query 453 GAGGGAGGCTCTGTTCTTCATCTGGTTCTTGCCCTTAGGGGTGGTTTTGGTCTTCTCTGA 512
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 GAGGGGGGCTCTGTTCTTCATCTGGTTCTTGCTCTTAGGGGTGGTTTTGGTCTTCTCTGA 480
Query 513 GAAGTAACTCTTGAAGATAT--CTTTTTCT-----C-TTTGTATGGCTTGTTGGAGTTCA 564
||||||||| || || |||| |||||||| | |||||||||||||||||||||||
Sbjct 481 GAAGTAACTATTAAACATATATCTTTTTCTGTTTTCCTTTGTATGGCTTGTTGGAGTTCA 540
Query 565 TGGGAAAAAAGTGATTGCAATTTGGATATGATACTTTGAATATTATGCTGTTTCACTGGG 624
|||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 541 TGGGGAAAAAGTGAATGCAATTTGGATATGATGCTTTGAATATTATGTTGTTTCAGTGGG 600
Query 625 TTTGGATCATTTTACCAATAATCTGTTAAATATCGAATCAT 665
||||||| | ||||||||||||||||||||||||||||||
Sbjct 601 TTTGGATTAACTTACCAATAATCTGTTAAATATCGAATCAT 641
> Ahg482524 jgi|Araly1|482524|fgenesh2_kg.4__1584__AT2G35635.1
Length=610
Score = 556 bits (301), Expect = 6e-158
Identities = 408/460 (89%), Gaps = 6/460 (1%)
Strand=Plus/Plus
Query 41 aaTGCAGATCTTCGTCAAAACCCTCACCGGAAAAACCATAACCCTAGAGGTCGAAAGCAG 100
|||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 46 AATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACTATAACCCTAGAGGTTGAGAGCAG 105
Query 101 CGACACCATCGACAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAATACCACCTGATCA 160
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 106 CGACACCATCGACAATGTCAAAGCCAAAATCCAGGACAAAGAGGGTATTCCACCTGATCA 165
Query 161 ACAGAGGTTGATATTTGCTGGTAAGCAGCTTG-AAGATGGTAGAACATTAGCGGATTACA 219
||| ||| |||| |||||||||||||| ||| ||||||| | || ||||| |||||||
Sbjct 166 ACAAAGGCTGATTTTTGCTGGTAAGCAA-TTGGAAGATGGCCGGACCTTAGCCGATTACA 224
Query 220 ACATTCAGAAAGAATCGACTCTTCA-CTTGGTATTGAGGCTTAGGGGTGGGACTATGATT 278
|||| |||||||| || |||||||| |||| | |||||||| || ||||| || |||||
Sbjct 225 ACATCCAGAAAGAGTCTACTCTTCATCTTG-TCTTGAGGCTCAGAGGTGGAACCATGATC 283
Query 279 AAGGTGAAGACTCTCACAGGGAAGGAAATTGAGATTGATATCGAACCAACCGATACTATT 338
||||| ||||| ||||| || || ||||| ||||||||||||||||||||||| ||||||
Sbjct 284 AAGGTCAAGACGCTCACTGGAAAAGAAATCGAGATTGATATCGAACCAACCGACACTATT 343
Query 339 GATCGGATTAAGGAACGTGTTGAGGAGAAAGAAGGTATCCCTCCTGTTCAACAAAGGCTA 398
|||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 344 GATCGGATCAAGGAACGGGTTGAAGAGAAAGAAGGCATCCCTCCTGTTCAACAAAGGCTC 403
Query 399 ATCTACGCCGGAAAACAGCTAGCTGATGACAAAACGGC-AAAGGACTACAACATAGAGGG 457
||||| ||||| |||||||| ||||||||||||||||| |||| | ||| |||||||||
Sbjct 404 ATCTATGCCGGGAAACAGCTTGCTGATGACAAAACGGCCAAAG-ATTACGCCATAGAGGG 462
Query 458 AGGCTCTGTTCTTCATCTGGTTCTTGCCCTTAGGGGTGGT 497
||||||||||||||| |||||||||| ||||||||||||
Sbjct 463 TGGCTCTGTTCTTCATTTGGTTCTTGCTCTTAGGGGTGGT 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27372254406
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5